BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40275.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891335 jgi|Araly1|891335|Al_scaffold_0007_3321 647 0.0
Ahg355810 jgi|Araly1|355810|fgenesh1_pg.C_scaffold_7002983 569 9e-162
Ahg355852 jgi|Araly1|355852|fgenesh1_pg.C_scaffold_7003025 353 1e-96
Ahg891097 jgi|Araly1|891097|Al_scaffold_0007_3083 257 8e-68
Ahg355983 jgi|Araly1|355983|fgenesh1_pg.C_scaffold_7003156 252 4e-66
Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918 219 4e-56
Ahg937635 jgi|Araly1|937635|scaffold_501826.1 217 1e-55
Ahg491524 jgi|Araly1|491524|fgenesh2_kg.7__957__AT1G45100.1 180 2e-44
Ahg937636 jgi|Araly1|937636|scaffold_501827.1 174 8e-43
Ahg947382 jgi|Araly1|947382|scaffold_703611.1 147 2e-34
Ahg916095 jgi|Araly1|916095|Al_scaffold_0008_846 69.4 4e-11
> Ahg891335 jgi|Araly1|891335|Al_scaffold_0007_3321
Length=1683
Score = 647 bits (350), Expect = 0.0
Identities = 575/680 (85%), Gaps = 30/680 (4%)
Strand=Plus/Plus
Query 28 CTCCAGGACTCAAGTATTGCATAGATTACACGGTTTGCTA-CAACGACTACCTTCAACGA 86
||||| || |||||||||||||||| ||| |||||| || || |||||||||| ||||
Sbjct 371 CTCCACTACCCAAGTATTGCATAGATCACAAGGTTTGGTATGAA-GACTACCTTCGACGA 429
Query 87 GAAAGCCTTCCGATAGAAGAAAATGAGACACCTTC-CGATTTTGTTGAGGAAGTACTCTA 145
||| ||||||| || || || |||||||||| || ||||||||||||| |||||||||
Sbjct 430 GAACGCCTTCCCATTGATGATGATGAGACACC-TCACGATTTTGTTGAGCAAGTACTCTT 488
Query 146 TGTTGCCAATCTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAG-AATTCTTCAAAGAT 203
|||| ||||||||||||||||||||||||||| | || || | | | ||||||||| |
Sbjct 489 TGTTACCAATCTCTCTCCCCAAACTAAAATATCAG-ATATC-ATGCATTTCTTCAAAAAC 546
Query 204 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA-------A-GCATGTGGGCTAT 255
|||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 547 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGGGCTAT 606
Query 256 GGCTTTGTTGACTTTGCTTCTTCTAACGA-AGCAAAGAAGGCGCTGCAAAAGAAGAATGG 314
||||||||||| ||||||||| ||||| | |||||||| ||| ||| || ||| | ||||
Sbjct 607 GGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGATGGCTCTGGAAGAGATGCATGG 665
Query 315 TGAATATTTGCATGATCATCA-GATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTA 373
||||||||||| ||||||| | |||||||||||| ||||||||| ||||||||||||||
Sbjct 666 TGAATATTTGCTTGATCAT-ATGATTTTTCTTCATGTGGCTAAGGCAGCTCCATACCCTC 724
Query 374 CACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGACAAA 433
||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 725 CACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACCTTCGACGTGGAA 784
Query 434 ACCTTGTGATAGAATAAGATGA-GACA-G-CAGTGGAAGGACTTGATGAAACTCCCAA-- 488
|||| |||||||| |||| || || | |||||||||||| |||||||| ||| ||
Sbjct 785 GCCTTCTGATAGAAGAAGAAGAAGATGTGTCAGTGGAAGGACCTGATGAAAGTCCTAAGC 844
Query 489 -TTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTC-CG 546
|||||||||||||||||| |||||||||||||||| ||| || || ||||| || |
Sbjct 845 CTTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACA 904
Query 547 GAAGCTCAAAT-ATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGT 605
|| || ||| |||| | || ||||||||||||||||| |||||| ||||||| ||| |
Sbjct 905 AAA-CT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATAT 962
Query 606 TCGACTTATTGTAGACTACACGGGCGAGCATGTGGGCGATGGCTTTGTTGAGTTTGCTTC 665
|||||||||||||||| | | |||| ||| ||||||| |||||||||||| |||||||||
Sbjct 963 TCGACTTATTGTAGACCATAAGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTC 1022
Query 666 TGCTAACGAAGCAGAGAAGG 685
||||||||||||| ||||||
Sbjct 1023 TGCTAACGAAGCAAAGAAGG 1042
Score = 220 bits (119), Expect = 1e-56
Identities = 241/297 (81%), Gaps = 20/297 (7%)
Strand=Plus/Plus
Query 141 CTCTATGTTGCCAATCTCTCTCCCCAAACTAAAATATTGCATGTCA-AAGAATTCTTCAA 199
|||| |||||||||||||| || | |||||| | ||| ||| ||| || ||||||||
Sbjct 1264 CTCTTTGTTGCCAATCTCTATCACAAAACTAGACTATCACATATCATCAG-TTTCTTCAA 1322
Query 200 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTA-A--AC--CA---AGCATGTGGG 251
||||||||||||||||||| ||||||||||||||||| | || | ||| | ||||
Sbjct 1323 AGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGGG 1382
Query 252 CTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCT-GCAAAAGAAGA 310
|| |||||||||||| |||||||||||| ||||||||||||||||||| | ||| |||||
Sbjct 1383 CTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTAG-AAACGAAGA 1441
Query 311 ATGGTGAA-TATTTGCAT-GATC-ATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCAT 367
| || || | || || | || || ||||||||| | |||||| ||| | ||| ||
Sbjct 1442 TTAGTAAAGCA-TT-AATGGGTCAAT-TTATTTTTCTTGACGTGGCTGAGATACCTCTAT 1498
Query 368 ACCCTAC-ACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTT 423
|||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1499 GCCCT-CTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTT 1554
Score = 163 bits (88), Expect = 2e-39
Identities = 139/163 (85%), Gaps = 6/163 (4%)
Strand=Plus/Plus
Query 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCAT-CAATTTCTTCAA 581
||||||||| || ||||||||| || || |||||||||||||||| | ||||||||||
Sbjct 484 CTCTTTGTTACCAATCTCTCTCCCCAAACTAAAATATCAGATATCATGC-ATTTCTTCAA 542
Query 582 AGACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTACACGGGCGAGCATGTGG 640
| |||||||| |||||| || |||||||||||||||| || | |||| |||||||||
Sbjct 543 AAACGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGG 601
Query 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGA-AGCAGAGA 682
|| ||||||||||||||||||||||||||||| | |||| |||
Sbjct 602 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGA 643
> Ahg355810 jgi|Araly1|355810|fgenesh1_pg.C_scaffold_7002983
Length=1788
Score = 569 bits (308), Expect = 9e-162
Identities = 552/663 (83%), Gaps = 43/663 (6%)
Strand=Plus/Plus
Query 38 CAAGTATTGCATAGATTACACGGTTTGCTACAACGACTACCTTCA-ACGAGAAAGCCTTC 96
|||||| ||||||||| ||| |||||| ||||| ||||||| | | | |||| ||||||
Sbjct 540 CAAGTACTGCATAGATCACAAGGTTTGGTACAAAGACTACCGT-AGAGGAGATTGCCTTC 598
Query 97 CGATAGAAGAAAATGAGACACCTTCCGATTTTGTTGAGGAAGTACTCTATGTTGCCAATC 156
|||||||||| ||||||||||| ||||||||| |||| ||||||||| |||| ||||||
Sbjct 599 TGATAGAAGAAGATGAGACACCTCCCGATTTTGATGAGAAAGTACTCTTTGTTTCCAATC 658
Query 157 TCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAATTCTTCAAAGATGTTGGAGAAGTT 215
||||||||||||||||||||| | || || || |||||||| ||||||||||||||
Sbjct 659 TCTCTCCCCAAACTAAAATATCAG-ATATCTTCGATTTCTTCAATTATGTTGGAGAAGTT 717
Query 216 GTTAGTGTTCGACTTATTGTAAACC--------AAGCATGTGGGCTATGGCTTTGTTGAC 267
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 718 GTTAGTGTTCGACTTATTGTAAACCATGAGGGTAAGCATGTGGGCTATGGCTTTGTTGAG 777
Query 268 TTTGCTTCTTCTAAC-GAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAATATTTGCA 326
||||||||| ||||| || |||| ||||| ||| |||| ||||||||||||||||||||
Sbjct 778 TTTGCTTCTGCTAACTTAA-CAAAAAAGGCACTGGAAAACAAGAATGGTGAATATTTGCA 836
Query 327 TGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTACACGACCCAAGTA 386
||||| ||||||||||| | |||||||||| ||||||||||||| |||||||||||||
Sbjct 837 CAATCATAAGATTTTTCTTGATGTGGCTAAGAAAGCTCCATACCCTCCACGACCCAAGTA 896
Query 387 CAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGACAAAACCTTGTGATAGA 446
||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 897 CAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGAGAAAGCCTTCCGATAGA 956
Query 447 ATAAGATGAGACAGCAGTGGAAGGACTTGATGAAACTCCCAATTTTGTTGAGGCAGTTG- 505
| || ||| |||| | || |||| ||||||||||||||||||
Sbjct 957 A---GA--AGA--GCAG---AC--AC---------CTCCTGATTTTGTTGAGGCAGTTGG 995
Query 506 CTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGAAG-CTCAAATATCAG-A 563
| ||||| | |||||||||||||||| ||| |||||||| | || || ||||||| | |
Sbjct 996 C-GTAAGTACAAAGACGCTCTTTGTTGCCCATCTCTCTC-GTAAAACTGAAATATC-GCA 1052
Query 564 TATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTA 623
|||||| ||||||||||| || |||||| ||||||| ||||||||||||||| || || |
Sbjct 1053 TATCATAAATTTCTTCAATGATGTTGGAGAAGTTGTTCATGTTCGACTTATTCTAAACCA 1112
Query 624 CACGGGCGAGCATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGA 682
|| ||| ||||| ||||| | ||||||||| ||||| | |||||||||||||||| |||
Sbjct 1113 CAATGGCAAGCATTTGGGCTG-TGGCTTTGTAGAGTTCGGTTCTGCTAACGAAGCAAAGA 1171
Query 683 AGG 685
|||
Sbjct 1172 AGG 1174
Score = 270 bits (146), Expect = 1e-71
Identities = 243/287 (85%), Gaps = 18/287 (6%)
Strand=Plus/Plus
Query 141 CTCTATGTTGCCAATCTCTCTCCCCAAACTAAAATATTGCATGTCA-AAGAATTCTTCAA 199
|||| | ||||||||||||||| | |||||||||||| ||| ||| | ||||||||||
Sbjct 1396 CTCTTTATTGCCAATCTCTCTCACAAAACTAAAATATCACATATCATCA-AATTCTTCAA 1454
Query 200 AGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAAA-C-CA------AGCATGTGG 250
|||||||||||||||| || | ||||||||||||||||| | || |||||||||
Sbjct 1455 AGATGTTGGAGAAGTT-TTCCGCGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGG 1513
Query 251 GCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGA 310
| | ||||||||| || ||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 1514 GTTGTGGCTTTGTCGAGTTTGCCTCTGCTAATGAAGCAAAGAAGGCGCTGCAAAAGAAGA 1573
Query 311 ATGGTGAATATTTGC--ATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATA 368
|||||||| |||||| | | |||| ||||||||||| | |||||| ||| |||||||||
Sbjct 1574 ATGGTGAAAATTTGCGCA-G-TCATAAGATTTTTCTTGACGTGGCTGAGAGAGCTCCATA 1631
Query 369 CCCTACAC-GACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAA 414
|||| | | ||||||||||||||||||||||||||||||| |||||
Sbjct 1632 CCCT-CTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGCACGAA 1677
Score = 150 bits (81), Expect = 1e-35
Identities = 129/152 (85%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAA 582
|||||||||||| ||||||||| || || |||||||||||||| || ||||||||||
Sbjct 643 CTCTTTGTTTCCAATCTCTCTCCCCAAACTAAAATATCAGATATCTTCGATTTCTTCAAT 702
Query 583 GACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTA-CACGGGCGAGCATGTGG 640
| |||||| |||||| || |||||||||||||||| || | | ||| |||||||||
Sbjct 703 TATGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAACCATGA-GGGTAAGCATGTGG 760
Query 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAAC 672
|| |||||||||||||||||||||||||||||
Sbjct 761 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC 792
> Ahg355852 jgi|Araly1|355852|fgenesh1_pg.C_scaffold_7003025
Length=1905
Score = 353 bits (191), Expect = 1e-96
Identities = 276/315 (88%), Gaps = 14/315 (4%)
Strand=Plus/Plus
Query 38 CAAGTATTGCATAGATTACACGGTTTGCTAC-AACGACTACCTTCAACGAGAAAGCCTTC 96
|||||||||||||||| ||| | |||| ||| || || ||||||| || |||||||||||
Sbjct 729 CAAGTATTGCATAGATCACAAGCTTTGTTACGAA-GATTACCTTCGACAAGAAAGCCTTC 787
Query 97 CGATAGAAGAAAATGAGACACCTTCC-GATTTTGTTGAGGAAGTACTCTATGTTGCCAAT 155
||||||||||| |||||||||| ||| | |||||||||| ||||||||| ||||||||||
Sbjct 788 CGATAGAAGAAGATGAGACACC-TCCTGGTTTTGTTGAGAAAGTACTCTTTGTTGCCAAT 846
Query 156 CTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAATTCTTCAAAGATGTTGGAGAAGT 214
|||||||||||||||||||||| | || ||||||| |||| ||||||||||||||||||
Sbjct 847 CTCTCTCCCCAAACTAAAATATCAG-ATATCAAAGATTTCTGCAAAGATGTTGGAGAAGT 905
Query 215 TGTTAGTGTTCGACTTATTGTAAACCA--AG------CATGTGGGCTATGGCTTTGTTGA 266
||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 906 TGTTAGTGTTCGACTTATTGTAAACCACGAGTGTAAGCATGTTGGCTATGGCTTTGTTGA 965
Query 267 CTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAATATTTGCA 326
||||||||| |||||| ||| ||||||| |||| |||||||||||||||||||||| ||
Sbjct 966 GTTTGCTTCTGCTAACGCAGCGAAGAAGGTGCTGGAAAAGAAGAATGGTGAATATTTACA 1025
Query 327 TGATCATCAGATTTT 341
|||||| |||||||
Sbjct 1026 CGATCATAAGATTTT 1040
Score = 289 bits (156), Expect = 3e-77
Identities = 199/220 (90%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 467 AAGGACTTGATGAAACTCCCAATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCT 526
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1049 AAGGACTTGATGAATCTCCCAATTTTGTTGAGACAGTTGCTGTAAGAAAAAAGACACTCT 1108
Query 527 TTGTTTCCCGTCTCTCTC-CGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAAGAC 585
||||| ||| |||||||| | || || |||||||| ||||||||| ||||||||||||
Sbjct 1109 TTGTTGCCCATCTCTCTCAC-CAAACTGAAATATCACATATCATCAGTTTCTTCAAAGAT 1167
Query 586 GTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTACACGGGCGAGCATGTGGGCGAT 645
||||| ||||||| |||||| |||||||||||||||| ||||| ||||| ||||||||
Sbjct 1168 ATTGGAGAAGTTGTTCATGTTAGACTTATTGTAGACTATGCGGGCAAGCATTTGGGCGAT 1227
Query 646 GGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685
||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 1267
Score = 270 bits (146), Expect = 1e-71
Identities = 228/266 (86%), Gaps = 12/266 (5%)
Strand=Plus/Plus
Query 192 TTCTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAA-C-CA------AG 243
||||||||||||||||||||||||||| ||||||||||||||||||| | || ||
Sbjct 1543 TTCTTCAAAGATGTTGGAGAAGTTGTTGGTGTTCGACTTATTGTAAACCACAGGGGTGAG 1602
Query 244 CATGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAA 303
|||||| ||| |||||||||||| ||| ||||| || | |||||||||||||||||||||
Sbjct 1603 CATGTGTGCTGTGGCTTTGTTGAGTTTTCTTCTGCTGATGAAGCAAAGAAGGCGCTGCAA 1662
Query 304 AAGAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCT 363
| ||||||||||||| |||| | || || | ||||||||| | |||| |||| ||||
Sbjct 1663 ATGAAGAATGGTGAAAATTTCCTTGGTCGTTTTATTTTTCTTGACGTGGTTAAGTTAGCT 1722
Query 364 CCATACCCTA-CACGACCCAAGTACAACCTTGCAGAGAAGCTTTG-TTACGAAGACTACC 421
|||||||| | | |||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1723 CCATACCCAATC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTT-CGAAGAGTACC 1780
Query 422 TTCGACGACAAAACCTTGTGATAGAA 447
||||||||||| ||||| ||||||||
Sbjct 1781 TTCGACGACAATACCTTCTGATAGAA 1806
Score = 148 bits (80), Expect = 5e-35
Identities = 141/169 (83%), Gaps = 10/169 (6%)
Strand=Plus/Plus
Query 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCA-ATTTCTTCAA 581
||||||||| || ||||||||| || || ||||||||||||||| | |||||| |||
Sbjct 832 CTCTTTGTTGCCAATCTCTCTCCCCAAACTAAAATATCAGATATCA-AAGATTTCTGCAA 890
Query 582 AGACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTACACG-G-GCGAGCATGT 638
||| |||||| |||||| || |||||||||||||||| || |||| | | |||||||
Sbjct 891 AGATGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAAC--CACGAGTGTAAGCATGT 947
Query 639 GGGCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGA-GAAGGT 686
||| |||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 948 TGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACGCAGC-GAAGAAGGT 995
> Ahg891097 jgi|Araly1|891097|Al_scaffold_0007_3083
Length=1356
Score = 257 bits (139), Expect = 8e-68
Identities = 246/294 (84%), Gaps = 21/294 (7%)
Strand=Plus/Plus
Query 38 CAAGTATTGCATAGATTACACGGTTTGCTAC-AACGACTACCTTCAACGAGAA---AGCC 93
|||||||||| ||||| ||| |||||| ||| || |||||||||| ||||||| |||
Sbjct 471 CAAGTATTGCTTAGATCACATGGTTTGGTACGAA-GACTACCTTCGACGAGAAGGCGGCC 529
Query 94 TTCCGATAGAAGAAAATGAGACACCTTC-CGATTTTGTTGAGGAAGTACTCTATGTTGCC 152
|||| | ||||||| | |||||||| || |||| |||||||||||| |||| |||||||
Sbjct 530 TTCCCACAGAAGAAGAGGAGACACC-TCTAGATTCTGTTGAGGAAGTGCTCTTTGTTGCC 588
Query 153 AATCTCTCTCCCCAAACTAAAATATTGCATGTCAAAGAATT-CTTC-AAAGATGTTGGAG 210
||||||||||||||||||||| |||| ||||||| |||| |||| ||| ||||||||
Sbjct 589 AATCTCTCTCCCCAAACTAAATTATTACATGTCATC-AATTTCTTCGAAA-ATGTTGGAA 646
Query 211 AAGTTGTTAGTGTTCGACTTATTGTAAACC---A----A-GCATGTGGGCTATGGCTTTG 262
||||||||||||||||||| ||||||||| | | ||||||||||||||||||||
Sbjct 647 AAGTTGTTAGTGTTCGACTCATTGTAAACAGTGAGGGTAAGCATGTGGGCTATGGCTTTG 706
Query 263 TTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGC-TGCAAAAGAAGAATGGT 315
|||| ||||||||| || || ||||||||||||| | || ||| ||||||||||
Sbjct 707 TTGAGTTTGCTTCTGCTGACAAAGCAAAGAAGGC-CATGGAAACGAAGAATGGT 759
Score = 145 bits (78), Expect = 7e-34
Identities = 157/194 (81%), Gaps = 10/194 (5%)
Strand=Plus/Plus
Query 497 AGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTC-CGGAAG-CTCA 554
||| || ||| ||| |||||||||| ||||||||| | | || | | | ||| || |
Sbjct 197 AGGAAGCTGCCGTACGAAAAAAGACTCTCTTTGTTGGCAATATC-C-CATGCAAGACTAA 254
Query 555 AATATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTAT 614
|||| || |||||||| ||||||||||| | |||||| || |||| | ||||| ||||||
Sbjct 255 AATACCAAATATCATCGATTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTAT 314
Query 615 TGT-AGACTACACGGGCGA-GCATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAA 671
| | || || || ||| | |||||||||| | |||||||||||||||||||||||||||
Sbjct 315 TCTAAGCCT-CAAGGG-TACGCATGTGGGCTG-TGGCTTTGTTGAGTTTGCTTCTGCTAA 371
Query 672 CGAAGCAGAGAAGG 685
||||||||||||||
Sbjct 372 CGAAGCAGAGAAGG 385
> Ahg355983 jgi|Araly1|355983|fgenesh1_pg.C_scaffold_7003156
Length=1659
Score = 252 bits (136), Expect = 4e-66
Identities = 229/273 (84%), Gaps = 10/273 (4%)
Strand=Plus/Plus
Query 467 AAGGACTTGATGAAACTCCCA-ATTTTGTTGAGGCAGTTGCTGTAAG-AAAAAAGACGCT 524
||| || |||||||||| ||| ||| ||||||||| ||||| | || |||||||| ||
Sbjct 794 AAGAACATGATGAAACT-CCAGATTATGTTGAGGCGGTTGCCAT-AGCGAAAAAGACACT 851
Query 525 CTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAAGA 584
|||||||||| |||||||||| || || | |||||||||||||||||||||||||||||
Sbjct 852 CTTTGTTTCCGGTCTCTCTCCCCAAACTGATATATCAGATATCATCAATTTCTTCAAAGA 911
Query 585 CGTTGGACAAGTTGTACATGTTCGACTTA-TTGTAGACTACACGGGCGAG-CATGTGGGC 642
|| ||| |||| || ||||||| ||||| || || || ||| ||| || |||||||||
Sbjct 912 TGTCGGAGAAGTCGTTCATGTTCAACTTACTT-TAAACAACAAAGGC-AGGCATGTGGGC 969
Query 643 GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGTAAGAGTAGTTTATAGT 702
|||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct 970 TATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAGAAGAGAAGGTGAGAGTAGTTTATAGT 1029
Query 703 AATGATGGAAGGTATTAAAGTAGTAAT-TTAAA 734
||||||| || || ||||||| || |||||
Sbjct 1030 AATGATGAAAA-TAGGCAAGTAGTTATATTAAA 1061
> Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918
Length=1443
Score = 219 bits (118), Expect = 4e-56
Identities = 191/225 (85%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 467 AAGGACTTGATGAAACTCCCA-ATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTC 525
|||||||||||| |||| ||| ||| || |||||||||||| ||||||| ||||| |||
Sbjct 668 AAGGACTTGATGGAACT-CCAGATTCTGCTGAGGCAGTTGCCATAAGAAATAAGACACTC 726
Query 526 TTTGTTTCCCGTCTCTCT-CC-GGA-AGCTCAAATATCAGATATCATCAATTTCTTCAAA 582
|||||| || ||||||| || | | | |||||||| ||||||||||||||||||||
Sbjct 727 TTTGTTACCAATCTCTCTCCCATAACAACAAAAATATCACATATCATCAATTTCTTCAAA 786
Query 583 GACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTACACGG-GCGAGCATG-TGG 640
|| |||||||||||||| ||||||||||||||||||||| | | | || || ||| |||
Sbjct 787 GATGTTGGACAAGTTGTTCATGTTCGACTTATTGTAGACCAAA-GATGC-AGGATGGTGG 844
Query 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685
| |||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GTTTTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 889
Score = 195 bits (105), Expect = 7e-49
Identities = 184/220 (84%), Gaps = 14/220 (6%)
Strand=Plus/Plus
Query 138 GTACTCTATGTTGCCAATCTCTCTCCCC--A-AACTAAAATATT-GCATGTCAAAGAATT 193
||||||| |||||||||||||||||||| | ||||||| | || ||| ||| ||
Sbjct 445 GTACTCTTTGTTGCCAATCTCTCTCCCCAAACAACTAAACT-TTCACATATCACCCTTTT 503
Query 194 CTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA--AG------CA 245
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 504 CTTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAAGCA 563
Query 246 TGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAA 305
||||||||||||||||||||| |||||| || || || |||||||| ||||||| ||||
Sbjct 564 TGTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAGTGGGCGCTGGAAAA 623
Query 306 GAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTT 345
|||||||||||||| ||||| |||||| ||||||| |||
Sbjct 624 TAAGAATGGTGAATACTTGCACGATCATAAGATTTT-CTT 662
> Ahg937635 jgi|Araly1|937635|scaffold_501826.1
Length=1229
Score = 217 bits (117), Expect = 1e-55
Identities = 171/196 (87%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 192 TTCTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACC---A----A-G 243
|||||||| |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 60 TTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGAGGGTAAG 119
Query 244 CATGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAA 303
||||||||||||||||||||||| ||||||||| || | |||||| | ||||||| ||
Sbjct 120 CATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTGGAA 179
Query 304 AAGAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCT 363
||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 180 AAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGACAGCT 239
Query 364 CCATACCCTACACGAC 379
||| ||||| ||||||
Sbjct 240 CCAGACCCTCCACGAC 255
Score = 202 bits (109), Expect = 4e-51
Identities = 208/253 (82%), Gaps = 18/253 (7%)
Strand=Plus/Plus
Query 148 TTGCCAATCTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAA-TTCTTCAAAGATGT 205
|||||||||||||| | |||||||||||| | || || || ||||||||||||||
Sbjct 823 TTGCCAATCTCTCTTTCAAAACTAAAATATCAG-ATATC-GTCAATTTCTTCAAAGATGT 880
Query 206 TGGAGAAGTTGTTAGTGTTCGACTTATTGTAAA-C-CA------AGCATGTGGGCTATGG 257
|||||||||| || ||||| ||||||||||||| | || |||||||||||| |||
Sbjct 881 TGGAGAAGTTTTTCGTGTTAGACTTATTGTAAACCACATGGGTGAGCATGTGGGCTGTGG 940
Query 258 CTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGA 317
||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CTTTGTTGAATTTTCTTCTGCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGA 1000
Query 318 ATATTTGCA-TGATCA-TCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTACA 375
| | |||| | || | | ||||||||| | | |||| ||| ||||||||||||| |
Sbjct 1001 AAAATTGCGCTT-TCGGT-ATATTTTTCTTGACGAGGCTGAGATAGCTCCATACCCT-CT 1057
Query 376 C-GACCCAAGTAC 387
| |||||||||||
Sbjct 1058 CCGACCCAAGTAC 1070
> Ahg491524 jgi|Araly1|491524|fgenesh2_kg.7__957__AT1G45100.1
Length=1572
Score = 180 bits (97), Expect = 2e-44
Identities = 179/216 (83%), Gaps = 15/216 (7%)
Strand=Plus/Plus
Query 476 ATGAAACTCCCAATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCC 535
||||| |||| ||||||||||| || ||| | | | |||| |||||||||||| ||
Sbjct 752 ATGAATCTCCTGGTTTTGTTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCA 808
Query 536 GTCTCTCTCCGGA-AGC-TCAA-ATATCAGATATCATCAATTTCTTCAAAGACGTTGGAC 592
||||| | || | | | || ||||||||||||||||||||||||||||| ||||||
Sbjct 809 ATCTCTGT---GACACCATTAAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGAG 865
Query 593 AAGTTGTACATGTTCGACTTATTGTAGACTA--CACGGGCGAGCATGTGGGC-GATGGCT 649
||||||| |||||||||||| ||||| || | || |||| |||||| |||| | |||||
Sbjct 866 AAGTTGTTCATGTTCGACTTGTTGTAAAC-AGCCA-GGGCAAGCATGCGGGCTG-TGGCT 922
Query 650 TTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685
||||||||||||||||||||||||||||||||||||
Sbjct 923 TTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 958
> Ahg937636 jgi|Araly1|937636|scaffold_501827.1
Length=377
Score = 174 bits (94), Expect = 8e-43
Identities = 201/251 (80%), Gaps = 14/251 (6%)
Strand=Plus/Plus
Query 497 AGGCAGTTGCTGT-AAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGA-AGCTCA 554
|||||||| | | |||| |||| ||||||| |||| || |||||||||| | | || |
Sbjct 119 AGGCAGTT-CCCTCAAGACAAAACACGCTCTATGTTACCTGTCTCTCTCCCCATA-CTAA 176
Query 555 AATATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTG-TACATGTTCGACTTA 613
|||||||||||||||| ||||||||||||| ||||||||||||| || ||||| |||||
Sbjct 177 AATATCAGATATCATCGATTTCTTCAAAGATGTTGGACAAGTTGTTA-GTGTTCAACTTA 235
Query 614 TTGT-AGACTAC-ACGGGCGAGCATGTGGGCGA-TGGCTTTGTTGAGTTTGCTTCTGCTA 670
| | | || | | ||| ||| | | | | | ||||||||||||||||||||||||||
Sbjct 236 CTATAAAAC-GCGA-GGGTAAGCGT-TTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCTA 292
Query 671 ACGAAGCAGAGAAGGTAAGAGTAGTTTATAGT--AATGATGGAAGGTATTAAAGTAGTAA 728
|||||||| ||||| | ||| ||||||||||| ||| ||| || ||||| | |||| |
Sbjct 293 ACGAAGCAAAGAAGTTGAGACTAGTTTATAGTTTAATCATGAAATGTATTTTACTAGTCA 352
Query 729 TTTAAAAAGTA 739
||| |||||||
Sbjct 353 TTTGAAAAGTA 363
> Ahg947382 jgi|Araly1|947382|scaffold_703611.1
Length=725
Score = 147 bits (79), Expect = 2e-34
Identities = 145/175 (83%), Gaps = 11/175 (6%)
Strand=Plus/Plus
Query 515 AAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGAAGC--TCAAATATCAGATATCATCAA 572
|||| ||||||| |||| || ||||| | || || | | ||||||||||||| |||||
Sbjct 246 AAAA-ACGCTCTATGTTGCCAATCTCTAT-CGTAA-CATTAAAATATCAGATATAATCAA 302
Query 573 TTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTA-CACGGGCG 631
|||||||||||| ||||| ||||||| |||||||||||||||||| || | || ||||
Sbjct 303 TTTCTTCAAAGATGTTGGGGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCAAGGGC- 360
Query 632 AG-CATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG 684
| ||| | || | | ||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTATGCGTGCTGGT-GCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG 414
> Ahg916095 jgi|Araly1|916095|Al_scaffold_0008_846
Length=279
Score = 69.4 bits (37), Expect = 4e-11
Identities = 46/50 (92%), Gaps = 2/50 (4%)
Strand=Plus/Plus
Query 134 GGAAGTACTCTAT-GTTGCCAATCTCTCTCCCCAAACTAAAATATTGCAT 182
|||| |||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 8 GGAATTACTCT-TCGTTGCCAATCTCTCTCCCCAAACTAAAATATTACAT 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5