BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40275.1 Length=895 Score E Sequences producing significant alignments: (Bits) Value Ahg891335 jgi|Araly1|891335|Al_scaffold_0007_3321 647 0.0 Ahg355810 jgi|Araly1|355810|fgenesh1_pg.C_scaffold_7002983 569 9e-162 Ahg355852 jgi|Araly1|355852|fgenesh1_pg.C_scaffold_7003025 353 1e-96 Ahg891097 jgi|Araly1|891097|Al_scaffold_0007_3083 257 8e-68 Ahg355983 jgi|Araly1|355983|fgenesh1_pg.C_scaffold_7003156 252 4e-66 Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918 219 4e-56 Ahg937635 jgi|Araly1|937635|scaffold_501826.1 217 1e-55 Ahg491524 jgi|Araly1|491524|fgenesh2_kg.7__957__AT1G45100.1 180 2e-44 Ahg937636 jgi|Araly1|937636|scaffold_501827.1 174 8e-43 Ahg947382 jgi|Araly1|947382|scaffold_703611.1 147 2e-34 Ahg916095 jgi|Araly1|916095|Al_scaffold_0008_846 69.4 4e-11 > Ahg891335 jgi|Araly1|891335|Al_scaffold_0007_3321 Length=1683 Score = 647 bits (350), Expect = 0.0 Identities = 575/680 (85%), Gaps = 30/680 (4%) Strand=Plus/Plus Query 28 CTCCAGGACTCAAGTATTGCATAGATTACACGGTTTGCTA-CAACGACTACCTTCAACGA 86 ||||| || |||||||||||||||| ||| |||||| || || |||||||||| |||| Sbjct 371 CTCCACTACCCAAGTATTGCATAGATCACAAGGTTTGGTATGAA-GACTACCTTCGACGA 429 Query 87 GAAAGCCTTCCGATAGAAGAAAATGAGACACCTTC-CGATTTTGTTGAGGAAGTACTCTA 145 ||| ||||||| || || || |||||||||| || ||||||||||||| ||||||||| Sbjct 430 GAACGCCTTCCCATTGATGATGATGAGACACC-TCACGATTTTGTTGAGCAAGTACTCTT 488 Query 146 TGTTGCCAATCTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAG-AATTCTTCAAAGAT 203 |||| ||||||||||||||||||||||||||| | || || | | | ||||||||| | Sbjct 489 TGTTACCAATCTCTCTCCCCAAACTAAAATATCAG-ATATC-ATGCATTTCTTCAAAAAC 546 Query 204 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA-------A-GCATGTGGGCTAT 255 |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 547 GTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGGGCTAT 606 Query 256 GGCTTTGTTGACTTTGCTTCTTCTAACGA-AGCAAAGAAGGCGCTGCAAAAGAAGAATGG 314 ||||||||||| ||||||||| ||||| | |||||||| ||| ||| || ||| | |||| Sbjct 607 GGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGATGGCTCTGGAAGAGATGCATGG 665 Query 315 TGAATATTTGCATGATCATCA-GATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTA 373 ||||||||||| ||||||| | |||||||||||| ||||||||| |||||||||||||| Sbjct 666 TGAATATTTGCTTGATCAT-ATGATTTTTCTTCATGTGGCTAAGGCAGCTCCATACCCTC 724 Query 374 CACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGACAAA 433 ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || Sbjct 725 CACGACCCAAGTACAACCTTGCAGAGATGCTTTGTTACGAGGACTACCTTCGACGTGGAA 784 Query 434 ACCTTGTGATAGAATAAGATGA-GACA-G-CAGTGGAAGGACTTGATGAAACTCCCAA-- 488 |||| |||||||| |||| || || | |||||||||||| |||||||| ||| || Sbjct 785 GCCTTCTGATAGAAGAAGAAGAAGATGTGTCAGTGGAAGGACCTGATGAAAGTCCTAAGC 844 Query 489 -TTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTC-CG 546 |||||||||||||||||| |||||||||||||||| ||| || || ||||| || | Sbjct 845 CTTTTGTTGAGGCAGTTGCCATAAGAAAAAAGACGCTATTTATTGCCAATCTCTGTCACA 904 Query 547 GAAGCTCAAAT-ATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGT 605 || || ||| |||| | || ||||||||||||||||| |||||| ||||||| ||| | Sbjct 905 AAA-CT-AAACCATCACACATTATCAATTTCTTCAAAGATGTTGGAGAAGTTGTTCATAT 962 Query 606 TCGACTTATTGTAGACTACACGGGCGAGCATGTGGGCGATGGCTTTGTTGAGTTTGCTTC 665 |||||||||||||||| | | |||| ||| ||||||| |||||||||||| ||||||||| Sbjct 963 TCGACTTATTGTAGACCATAAGGGCAAGCTTGTGGGCTATGGCTTTGTTGTGTTTGCTTC 1022 Query 666 TGCTAACGAAGCAGAGAAGG 685 ||||||||||||| |||||| Sbjct 1023 TGCTAACGAAGCAAAGAAGG 1042 Score = 220 bits (119), Expect = 1e-56 Identities = 241/297 (81%), Gaps = 20/297 (7%) Strand=Plus/Plus Query 141 CTCTATGTTGCCAATCTCTCTCCCCAAACTAAAATATTGCATGTCA-AAGAATTCTTCAA 199 |||| |||||||||||||| || | |||||| | ||| ||| ||| || |||||||| Sbjct 1264 CTCTTTGTTGCCAATCTCTATCACAAAACTAGACTATCACATATCATCAG-TTTCTTCAA 1322 Query 200 AGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTA-A--AC--CA---AGCATGTGGG 251 ||||||||||||||||||| ||||||||||||||||| | || | ||| | |||| Sbjct 1323 AGATGTTGGAGAAGTTGTTTGTGTTCGACTTATTGTAGACCACATGAGTGAGCGTTTGGG 1382 Query 252 CTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCT-GCAAAAGAAGA 310 || |||||||||||| |||||||||||| ||||||||||||||||||| | ||| ||||| Sbjct 1383 CTGTGGCTTTGTTGAGTTTGCTTCTTCTTACGAAGCAAAGAAGGCGCTAG-AAACGAAGA 1441 Query 311 ATGGTGAA-TATTTGCAT-GATC-ATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCAT 367 | || || | || || | || || ||||||||| | |||||| ||| | ||| || Sbjct 1442 TTAGTAAAGCA-TT-AATGGGTCAAT-TTATTTTTCTTGACGTGGCTGAGATACCTCTAT 1498 Query 368 ACCCTAC-ACGACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTT 423 |||| | |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1499 GCCCT-CTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTACGAAGACTACCTT 1554 Score = 163 bits (88), Expect = 2e-39 Identities = 139/163 (85%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCAT-CAATTTCTTCAA 581 ||||||||| || ||||||||| || || |||||||||||||||| | |||||||||| Sbjct 484 CTCTTTGTTACCAATCTCTCTCCCCAAACTAAAATATCAGATATCATGC-ATTTCTTCAA 542 Query 582 AGACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTACACGGGCGAGCATGTGG 640 | |||||||| |||||| || |||||||||||||||| || | |||| ||||||||| Sbjct 543 AAACGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAACCATGTGGGCAAGCATGTGG 601 Query 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGA-AGCAGAGA 682 || ||||||||||||||||||||||||||||| | |||| ||| Sbjct 602 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC-ATAGCAAAGA 643 > Ahg355810 jgi|Araly1|355810|fgenesh1_pg.C_scaffold_7002983 Length=1788 Score = 569 bits (308), Expect = 9e-162 Identities = 552/663 (83%), Gaps = 43/663 (6%) Strand=Plus/Plus Query 38 CAAGTATTGCATAGATTACACGGTTTGCTACAACGACTACCTTCA-ACGAGAAAGCCTTC 96 |||||| ||||||||| ||| |||||| ||||| ||||||| | | | |||| |||||| Sbjct 540 CAAGTACTGCATAGATCACAAGGTTTGGTACAAAGACTACCGT-AGAGGAGATTGCCTTC 598 Query 97 CGATAGAAGAAAATGAGACACCTTCCGATTTTGTTGAGGAAGTACTCTATGTTGCCAATC 156 |||||||||| ||||||||||| ||||||||| |||| ||||||||| |||| |||||| Sbjct 599 TGATAGAAGAAGATGAGACACCTCCCGATTTTGATGAGAAAGTACTCTTTGTTTCCAATC 658 Query 157 TCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAATTCTTCAAAGATGTTGGAGAAGTT 215 ||||||||||||||||||||| | || || || |||||||| |||||||||||||| Sbjct 659 TCTCTCCCCAAACTAAAATATCAG-ATATCTTCGATTTCTTCAATTATGTTGGAGAAGTT 717 Query 216 GTTAGTGTTCGACTTATTGTAAACC--------AAGCATGTGGGCTATGGCTTTGTTGAC 267 ||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 718 GTTAGTGTTCGACTTATTGTAAACCATGAGGGTAAGCATGTGGGCTATGGCTTTGTTGAG 777 Query 268 TTTGCTTCTTCTAAC-GAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAATATTTGCA 326 ||||||||| ||||| || |||| ||||| ||| |||| |||||||||||||||||||| Sbjct 778 TTTGCTTCTGCTAACTTAA-CAAAAAAGGCACTGGAAAACAAGAATGGTGAATATTTGCA 836 Query 327 TGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTACACGACCCAAGTA 386 ||||| ||||||||||| | |||||||||| ||||||||||||| ||||||||||||| Sbjct 837 CAATCATAAGATTTTTCTTGATGTGGCTAAGAAAGCTCCATACCCTCCACGACCCAAGTA 896 Query 387 CAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGACAAAACCTTGTGATAGA 446 ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 897 CAACCTTGCAGAGAAGCTTTGTTACGAAGACTACCTTCGACGAGAAAGCCTTCCGATAGA 956 Query 447 ATAAGATGAGACAGCAGTGGAAGGACTTGATGAAACTCCCAATTTTGTTGAGGCAGTTG- 505 | || ||| |||| | || |||| |||||||||||||||||| Sbjct 957 A---GA--AGA--GCAG---AC--AC---------CTCCTGATTTTGTTGAGGCAGTTGG 995 Query 506 CTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGAAG-CTCAAATATCAG-A 563 | ||||| | |||||||||||||||| ||| |||||||| | || || ||||||| | | Sbjct 996 C-GTAAGTACAAAGACGCTCTTTGTTGCCCATCTCTCTC-GTAAAACTGAAATATC-GCA 1052 Query 564 TATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTA 623 |||||| ||||||||||| || |||||| ||||||| ||||||||||||||| || || | Sbjct 1053 TATCATAAATTTCTTCAATGATGTTGGAGAAGTTGTTCATGTTCGACTTATTCTAAACCA 1112 Query 624 CACGGGCGAGCATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGA 682 || ||| ||||| ||||| | ||||||||| ||||| | |||||||||||||||| ||| Sbjct 1113 CAATGGCAAGCATTTGGGCTG-TGGCTTTGTAGAGTTCGGTTCTGCTAACGAAGCAAAGA 1171 Query 683 AGG 685 ||| Sbjct 1172 AGG 1174 Score = 270 bits (146), Expect = 1e-71 Identities = 243/287 (85%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 141 CTCTATGTTGCCAATCTCTCTCCCCAAACTAAAATATTGCATGTCA-AAGAATTCTTCAA 199 |||| | ||||||||||||||| | |||||||||||| ||| ||| | |||||||||| Sbjct 1396 CTCTTTATTGCCAATCTCTCTCACAAAACTAAAATATCACATATCATCA-AATTCTTCAA 1454 Query 200 AGATGTTGGAGAAGTTGTT-AGTGTTCGACTTATTGTAAA-C-CA------AGCATGTGG 250 |||||||||||||||| || | ||||||||||||||||| | || ||||||||| Sbjct 1455 AGATGTTGGAGAAGTT-TTCCGCGTTCGACTTATTGTAAACCACAGGGGTGAGCATGTGG 1513 Query 251 GCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGA 310 | | ||||||||| || ||||| ||| |||| |||||||||||||||||||||||||||| Sbjct 1514 GTTGTGGCTTTGTCGAGTTTGCCTCTGCTAATGAAGCAAAGAAGGCGCTGCAAAAGAAGA 1573 Query 311 ATGGTGAATATTTGC--ATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATA 368 |||||||| |||||| | | |||| ||||||||||| | |||||| ||| ||||||||| Sbjct 1574 ATGGTGAAAATTTGCGCA-G-TCATAAGATTTTTCTTGACGTGGCTGAGAGAGCTCCATA 1631 Query 369 CCCTACAC-GACCCAAGTACAACCTTGCAGAGAAGCTTTGTTACGAA 414 |||| | | ||||||||||||||||||||||||||||||| ||||| Sbjct 1632 CCCT-CTCCGACCCAAGTACAACCTTGCAGAGAAGCTTTGGCACGAA 1677 Score = 150 bits (81), Expect = 1e-35 Identities = 129/152 (85%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAA 582 |||||||||||| ||||||||| || || |||||||||||||| || |||||||||| Sbjct 643 CTCTTTGTTTCCAATCTCTCTCCCCAAACTAAAATATCAGATATCTTCGATTTCTTCAAT 702 Query 583 GACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTA-CACGGGCGAGCATGTGG 640 | |||||| |||||| || |||||||||||||||| || | | ||| ||||||||| Sbjct 703 TATGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAACCATGA-GGGTAAGCATGTGG 760 Query 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAAC 672 || ||||||||||||||||||||||||||||| Sbjct 761 GCTATGGCTTTGTTGAGTTTGCTTCTGCTAAC 792 > Ahg355852 jgi|Araly1|355852|fgenesh1_pg.C_scaffold_7003025 Length=1905 Score = 353 bits (191), Expect = 1e-96 Identities = 276/315 (88%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 38 CAAGTATTGCATAGATTACACGGTTTGCTAC-AACGACTACCTTCAACGAGAAAGCCTTC 96 |||||||||||||||| ||| | |||| ||| || || ||||||| || ||||||||||| Sbjct 729 CAAGTATTGCATAGATCACAAGCTTTGTTACGAA-GATTACCTTCGACAAGAAAGCCTTC 787 Query 97 CGATAGAAGAAAATGAGACACCTTCC-GATTTTGTTGAGGAAGTACTCTATGTTGCCAAT 155 ||||||||||| |||||||||| ||| | |||||||||| ||||||||| |||||||||| Sbjct 788 CGATAGAAGAAGATGAGACACC-TCCTGGTTTTGTTGAGAAAGTACTCTTTGTTGCCAAT 846 Query 156 CTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAATTCTTCAAAGATGTTGGAGAAGT 214 |||||||||||||||||||||| | || ||||||| |||| |||||||||||||||||| Sbjct 847 CTCTCTCCCCAAACTAAAATATCAG-ATATCAAAGATTTCTGCAAAGATGTTGGAGAAGT 905 Query 215 TGTTAGTGTTCGACTTATTGTAAACCA--AG------CATGTGGGCTATGGCTTTGTTGA 266 ||||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 906 TGTTAGTGTTCGACTTATTGTAAACCACGAGTGTAAGCATGTTGGCTATGGCTTTGTTGA 965 Query 267 CTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGAATATTTGCA 326 ||||||||| |||||| ||| ||||||| |||| |||||||||||||||||||||| || Sbjct 966 GTTTGCTTCTGCTAACGCAGCGAAGAAGGTGCTGGAAAAGAAGAATGGTGAATATTTACA 1025 Query 327 TGATCATCAGATTTT 341 |||||| ||||||| Sbjct 1026 CGATCATAAGATTTT 1040 Score = 289 bits (156), Expect = 3e-77 Identities = 199/220 (90%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 467 AAGGACTTGATGAAACTCCCAATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCT 526 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 1049 AAGGACTTGATGAATCTCCCAATTTTGTTGAGACAGTTGCTGTAAGAAAAAAGACACTCT 1108 Query 527 TTGTTTCCCGTCTCTCTC-CGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAAGAC 585 ||||| ||| |||||||| | || || |||||||| ||||||||| |||||||||||| Sbjct 1109 TTGTTGCCCATCTCTCTCAC-CAAACTGAAATATCACATATCATCAGTTTCTTCAAAGAT 1167 Query 586 GTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTACACGGGCGAGCATGTGGGCGAT 645 ||||| ||||||| |||||| |||||||||||||||| ||||| ||||| |||||||| Sbjct 1168 ATTGGAGAAGTTGTTCATGTTAGACTTATTGTAGACTATGCGGGCAAGCATTTGGGCGAT 1227 Query 646 GGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685 |||||||||||||||||||||||||||||||||||||||| Sbjct 1228 GGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 1267 Score = 270 bits (146), Expect = 1e-71 Identities = 228/266 (86%), Gaps = 12/266 (5%) Strand=Plus/Plus Query 192 TTCTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAA-C-CA------AG 243 ||||||||||||||||||||||||||| ||||||||||||||||||| | || || Sbjct 1543 TTCTTCAAAGATGTTGGAGAAGTTGTTGGTGTTCGACTTATTGTAAACCACAGGGGTGAG 1602 Query 244 CATGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAA 303 |||||| ||| |||||||||||| ||| ||||| || | ||||||||||||||||||||| Sbjct 1603 CATGTGTGCTGTGGCTTTGTTGAGTTTTCTTCTGCTGATGAAGCAAAGAAGGCGCTGCAA 1662 Query 304 AAGAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCT 363 | ||||||||||||| |||| | || || | ||||||||| | |||| |||| |||| Sbjct 1663 ATGAAGAATGGTGAAAATTTCCTTGGTCGTTTTATTTTTCTTGACGTGGTTAAGTTAGCT 1722 Query 364 CCATACCCTA-CACGACCCAAGTACAACCTTGCAGAGAAGCTTTG-TTACGAAGACTACC 421 |||||||| | | |||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 1723 CCATACCCAATC-CGACCCAAGTACAACCTTGCAGAGAAGCTTTGGTT-CGAAGAGTACC 1780 Query 422 TTCGACGACAAAACCTTGTGATAGAA 447 ||||||||||| ||||| |||||||| Sbjct 1781 TTCGACGACAATACCTTCTGATAGAA 1806 Score = 148 bits (80), Expect = 5e-35 Identities = 141/169 (83%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 523 CTCTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCA-ATTTCTTCAA 581 ||||||||| || ||||||||| || || ||||||||||||||| | |||||| ||| Sbjct 832 CTCTTTGTTGCCAATCTCTCTCCCCAAACTAAAATATCAGATATCA-AAGATTTCTGCAA 890 Query 582 AGACGTTGGACAAGTTG-TACATGTTCGACTTATTGTAGACTACACG-G-GCGAGCATGT 638 ||| |||||| |||||| || |||||||||||||||| || |||| | | ||||||| Sbjct 891 AGATGTTGGAGAAGTTGTTA-GTGTTCGACTTATTGTAAAC--CACGAGTGTAAGCATGT 947 Query 639 GGGCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGA-GAAGGT 686 ||| |||||||||||||||||||||||||||||| ||| || |||||| Sbjct 948 TGGCTATGGCTTTGTTGAGTTTGCTTCTGCTAACGCAGC-GAAGAAGGT 995 > Ahg891097 jgi|Araly1|891097|Al_scaffold_0007_3083 Length=1356 Score = 257 bits (139), Expect = 8e-68 Identities = 246/294 (84%), Gaps = 21/294 (7%) Strand=Plus/Plus Query 38 CAAGTATTGCATAGATTACACGGTTTGCTAC-AACGACTACCTTCAACGAGAA---AGCC 93 |||||||||| ||||| ||| |||||| ||| || |||||||||| ||||||| ||| Sbjct 471 CAAGTATTGCTTAGATCACATGGTTTGGTACGAA-GACTACCTTCGACGAGAAGGCGGCC 529 Query 94 TTCCGATAGAAGAAAATGAGACACCTTC-CGATTTTGTTGAGGAAGTACTCTATGTTGCC 152 |||| | ||||||| | |||||||| || |||| |||||||||||| |||| ||||||| Sbjct 530 TTCCCACAGAAGAAGAGGAGACACC-TCTAGATTCTGTTGAGGAAGTGCTCTTTGTTGCC 588 Query 153 AATCTCTCTCCCCAAACTAAAATATTGCATGTCAAAGAATT-CTTC-AAAGATGTTGGAG 210 ||||||||||||||||||||| |||| ||||||| |||| |||| ||| |||||||| Sbjct 589 AATCTCTCTCCCCAAACTAAATTATTACATGTCATC-AATTTCTTCGAAA-ATGTTGGAA 646 Query 211 AAGTTGTTAGTGTTCGACTTATTGTAAACC---A----A-GCATGTGGGCTATGGCTTTG 262 ||||||||||||||||||| ||||||||| | | |||||||||||||||||||| Sbjct 647 AAGTTGTTAGTGTTCGACTCATTGTAAACAGTGAGGGTAAGCATGTGGGCTATGGCTTTG 706 Query 263 TTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGC-TGCAAAAGAAGAATGGT 315 |||| ||||||||| || || ||||||||||||| | || ||| |||||||||| Sbjct 707 TTGAGTTTGCTTCTGCTGACAAAGCAAAGAAGGC-CATGGAAACGAAGAATGGT 759 Score = 145 bits (78), Expect = 7e-34 Identities = 157/194 (81%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 497 AGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTC-CGGAAG-CTCA 554 ||| || ||| ||| |||||||||| ||||||||| | | || | | | ||| || | Sbjct 197 AGGAAGCTGCCGTACGAAAAAAGACTCTCTTTGTTGGCAATATC-C-CATGCAAGACTAA 254 Query 555 AATATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTAT 614 |||| || |||||||| ||||||||||| | |||||| || |||| | ||||| |||||| Sbjct 255 AATACCAAATATCATCGATTTCTTCAAAAATGTTGGAGAAATTGTTCGTGTTCAACTTAT 314 Query 615 TGT-AGACTACACGGGCGA-GCATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAA 671 | | || || || ||| | |||||||||| | ||||||||||||||||||||||||||| Sbjct 315 TCTAAGCCT-CAAGGG-TACGCATGTGGGCTG-TGGCTTTGTTGAGTTTGCTTCTGCTAA 371 Query 672 CGAAGCAGAGAAGG 685 |||||||||||||| Sbjct 372 CGAAGCAGAGAAGG 385 > Ahg355983 jgi|Araly1|355983|fgenesh1_pg.C_scaffold_7003156 Length=1659 Score = 252 bits (136), Expect = 4e-66 Identities = 229/273 (84%), Gaps = 10/273 (4%) Strand=Plus/Plus Query 467 AAGGACTTGATGAAACTCCCA-ATTTTGTTGAGGCAGTTGCTGTAAG-AAAAAAGACGCT 524 ||| || |||||||||| ||| ||| ||||||||| ||||| | || |||||||| || Sbjct 794 AAGAACATGATGAAACT-CCAGATTATGTTGAGGCGGTTGCCAT-AGCGAAAAAGACACT 851 Query 525 CTTTGTTTCCCGTCTCTCTCCGGAAGCTCAAATATCAGATATCATCAATTTCTTCAAAGA 584 |||||||||| |||||||||| || || | ||||||||||||||||||||||||||||| Sbjct 852 CTTTGTTTCCGGTCTCTCTCCCCAAACTGATATATCAGATATCATCAATTTCTTCAAAGA 911 Query 585 CGTTGGACAAGTTGTACATGTTCGACTTA-TTGTAGACTACACGGGCGAG-CATGTGGGC 642 || ||| |||| || ||||||| ||||| || || || ||| ||| || ||||||||| Sbjct 912 TGTCGGAGAAGTCGTTCATGTTCAACTTACTT-TAAACAACAAAGGC-AGGCATGTGGGC 969 Query 643 GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGTAAGAGTAGTTTATAGT 702 |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| Sbjct 970 TATGGCTTTGTTGAGTTTGCTTCTGCTGACGAAGAAGAGAAGGTGAGAGTAGTTTATAGT 1029 Query 703 AATGATGGAAGGTATTAAAGTAGTAAT-TTAAA 734 ||||||| || || ||||||| || ||||| Sbjct 1030 AATGATGAAAA-TAGGCAAGTAGTTATATTAAA 1061 > Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918 Length=1443 Score = 219 bits (118), Expect = 4e-56 Identities = 191/225 (85%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 467 AAGGACTTGATGAAACTCCCA-ATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTC 525 |||||||||||| |||| ||| ||| || |||||||||||| ||||||| ||||| ||| Sbjct 668 AAGGACTTGATGGAACT-CCAGATTCTGCTGAGGCAGTTGCCATAAGAAATAAGACACTC 726 Query 526 TTTGTTTCCCGTCTCTCT-CC-GGA-AGCTCAAATATCAGATATCATCAATTTCTTCAAA 582 |||||| || ||||||| || | | | |||||||| |||||||||||||||||||| Sbjct 727 TTTGTTACCAATCTCTCTCCCATAACAACAAAAATATCACATATCATCAATTTCTTCAAA 786 Query 583 GACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTACACGG-GCGAGCATG-TGG 640 || |||||||||||||| ||||||||||||||||||||| | | | || || ||| ||| Sbjct 787 GATGTTGGACAAGTTGTTCATGTTCGACTTATTGTAGACCAAA-GATGC-AGGATGGTGG 844 Query 641 GCGATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 845 GTTTTGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 889 Score = 195 bits (105), Expect = 7e-49 Identities = 184/220 (84%), Gaps = 14/220 (6%) Strand=Plus/Plus Query 138 GTACTCTATGTTGCCAATCTCTCTCCCC--A-AACTAAAATATT-GCATGTCAAAGAATT 193 ||||||| |||||||||||||||||||| | ||||||| | || ||| ||| || Sbjct 445 GTACTCTTTGTTGCCAATCTCTCTCCCCAAACAACTAAACT-TTCACATATCACCCTTTT 503 Query 194 CTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCA--AG------CA 245 |||||||||||||||||| ||||||||||||||||||||||||||||| || || Sbjct 504 CTTCAAAGATGTTGGAGATGTTGTTAGTGTTCGACTTATTGTAAACCAGGAGGGTAAGCA 563 Query 246 TGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAA 305 ||||||||||||||||||||| |||||| || || || |||||||| ||||||| |||| Sbjct 564 TGTGGGCTATGGCTTTGTTGAGTTTGCTACTGCTCACCAAGCAAAGTGGGCGCTGGAAAA 623 Query 306 GAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTT 345 |||||||||||||| ||||| |||||| ||||||| ||| Sbjct 624 TAAGAATGGTGAATACTTGCACGATCATAAGATTTT-CTT 662 > Ahg937635 jgi|Araly1|937635|scaffold_501826.1 Length=1229 Score = 217 bits (117), Expect = 1e-55 Identities = 171/196 (87%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 192 TTCTTCAAAGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACC---A----A-G 243 |||||||| |||||||||||||||||||||||||||||||||||||||| | | | Sbjct 60 TTCTTCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGAGGGTAAG 119 Query 244 CATGTGGGCTATGGCTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAA 303 ||||||||||||||||||||||| ||||||||| || | |||||| | ||||||| || Sbjct 120 CATGTGGGCTATGGCTTTGTTGAGTTTGCTTCTCCTTGCTTAGCAAACATGGCGCTGGAA 179 Query 304 AAGAAGAATGGTGAATATTTGCATGATCATCAGATTTTTCTTCAAGTGGCTAAGACAGCT 363 ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 180 AAGAAGAATGGTGAATATTTGCACGATCATAAGATTTTTCTTGGTGTGGCTAAGACAGCT 239 Query 364 CCATACCCTACACGAC 379 ||| ||||| |||||| Sbjct 240 CCAGACCCTCCACGAC 255 Score = 202 bits (109), Expect = 4e-51 Identities = 208/253 (82%), Gaps = 18/253 (7%) Strand=Plus/Plus Query 148 TTGCCAATCTCTCTCCCCAAACTAAAATAT-TGCATGTCAAAGAA-TTCTTCAAAGATGT 205 |||||||||||||| | |||||||||||| | || || || |||||||||||||| Sbjct 823 TTGCCAATCTCTCTTTCAAAACTAAAATATCAG-ATATC-GTCAATTTCTTCAAAGATGT 880 Query 206 TGGAGAAGTTGTTAGTGTTCGACTTATTGTAAA-C-CA------AGCATGTGGGCTATGG 257 |||||||||| || ||||| ||||||||||||| | || |||||||||||| ||| Sbjct 881 TGGAGAAGTTTTTCGTGTTAGACTTATTGTAAACCACATGGGTGAGCATGTGGGCTGTGG 940 Query 258 CTTTGTTGACTTTGCTTCTTCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGA 317 ||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 941 CTTTGTTGAATTTTCTTCTGCTAACGAAGCAAAGAAGGCGCTGCAAAAGAAGAATGGTGA 1000 Query 318 ATATTTGCA-TGATCA-TCAGATTTTTCTTCAAGTGGCTAAGACAGCTCCATACCCTACA 375 | | |||| | || | | ||||||||| | | |||| ||| ||||||||||||| | Sbjct 1001 AAAATTGCGCTT-TCGGT-ATATTTTTCTTGACGAGGCTGAGATAGCTCCATACCCT-CT 1057 Query 376 C-GACCCAAGTAC 387 | ||||||||||| Sbjct 1058 CCGACCCAAGTAC 1070 > Ahg491524 jgi|Araly1|491524|fgenesh2_kg.7__957__AT1G45100.1 Length=1572 Score = 180 bits (97), Expect = 2e-44 Identities = 179/216 (83%), Gaps = 15/216 (7%) Strand=Plus/Plus Query 476 ATGAAACTCCCAATTTTGTTGAGGCAGTTGCTGTAAGAAAAAAGACGCTCTTTGTTTCCC 535 ||||| |||| ||||||||||| || ||| | | | |||| |||||||||||| || Sbjct 752 ATGAATCTCCTGGTTTTGTTGAGGAAGCTGCCAT-A-ACAAAA-ACGCTCTTTGTTGCCA 808 Query 536 GTCTCTCTCCGGA-AGC-TCAA-ATATCAGATATCATCAATTTCTTCAAAGACGTTGGAC 592 ||||| | || | | | || ||||||||||||||||||||||||||||| |||||| Sbjct 809 ATCTCTGT---GACACCATTAAGATATCAGATATCATCAATTTCTTCAAAGATGTTGGAG 865 Query 593 AAGTTGTACATGTTCGACTTATTGTAGACTA--CACGGGCGAGCATGTGGGC-GATGGCT 649 ||||||| |||||||||||| ||||| || | || |||| |||||| |||| | ||||| Sbjct 866 AAGTTGTTCATGTTCGACTTGTTGTAAAC-AGCCA-GGGCAAGCATGCGGGCTG-TGGCT 922 Query 650 TTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 685 |||||||||||||||||||||||||||||||||||| Sbjct 923 TTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGG 958 > Ahg937636 jgi|Araly1|937636|scaffold_501827.1 Length=377 Score = 174 bits (94), Expect = 8e-43 Identities = 201/251 (80%), Gaps = 14/251 (6%) Strand=Plus/Plus Query 497 AGGCAGTTGCTGT-AAGAAAAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGA-AGCTCA 554 |||||||| | | |||| |||| ||||||| |||| || |||||||||| | | || | Sbjct 119 AGGCAGTT-CCCTCAAGACAAAACACGCTCTATGTTACCTGTCTCTCTCCCCATA-CTAA 176 Query 555 AATATCAGATATCATCAATTTCTTCAAAGACGTTGGACAAGTTG-TACATGTTCGACTTA 613 |||||||||||||||| ||||||||||||| ||||||||||||| || ||||| ||||| Sbjct 177 AATATCAGATATCATCGATTTCTTCAAAGATGTTGGACAAGTTGTTA-GTGTTCAACTTA 235 Query 614 TTGT-AGACTAC-ACGGGCGAGCATGTGGGCGA-TGGCTTTGTTGAGTTTGCTTCTGCTA 670 | | | || | | ||| ||| | | | | | |||||||||||||||||||||||||| Sbjct 236 CTATAAAAC-GCGA-GGGTAAGCGT-TTGTCCAGTGGCTTTGTTGAGTTTGCTTCTGCTA 292 Query 671 ACGAAGCAGAGAAGGTAAGAGTAGTTTATAGT--AATGATGGAAGGTATTAAAGTAGTAA 728 |||||||| ||||| | ||| ||||||||||| ||| ||| || ||||| | |||| | Sbjct 293 ACGAAGCAAAGAAGTTGAGACTAGTTTATAGTTTAATCATGAAATGTATTTTACTAGTCA 352 Query 729 TTTAAAAAGTA 739 ||| ||||||| Sbjct 353 TTTGAAAAGTA 363 > Ahg947382 jgi|Araly1|947382|scaffold_703611.1 Length=725 Score = 147 bits (79), Expect = 2e-34 Identities = 145/175 (83%), Gaps = 11/175 (6%) Strand=Plus/Plus Query 515 AAAAGACGCTCTTTGTTTCCCGTCTCTCTCCGGAAGC--TCAAATATCAGATATCATCAA 572 |||| ||||||| |||| || ||||| | || || | | ||||||||||||| ||||| Sbjct 246 AAAA-ACGCTCTATGTTGCCAATCTCTAT-CGTAA-CATTAAAATATCAGATATAATCAA 302 Query 573 TTTCTTCAAAGACGTTGGACAAGTTGTACATGTTCGACTTATTGTAGACTA-CACGGGCG 631 |||||||||||| ||||| ||||||| |||||||||||||||||| || | || |||| Sbjct 303 TTTCTTCAAAGATGTTGGGGAAGTTGTTCATGTTCGACTTATTGTAAAC-AGCAAGGGC- 360 Query 632 AG-CATGTGGGC-GATGGCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG 684 | ||| | || | | |||||||||||||||||||||||||||||||||||||| Sbjct 361 TGTTATGCGTGCTGGT-GCTTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAG 414 > Ahg916095 jgi|Araly1|916095|Al_scaffold_0008_846 Length=279 Score = 69.4 bits (37), Expect = 4e-11 Identities = 46/50 (92%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 134 GGAAGTACTCTAT-GTTGCCAATCTCTCTCCCCAAACTAAAATATTGCAT 182 |||| |||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 8 GGAATTACTCT-TCGTTGCCAATCTCTCTCCCCAAACTAAAATATTACAT 56 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33166937790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5