BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40360.1
Length=1201
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330471 jgi|Araly1|330471|fgenesh1_pm.C_scaffold_7002698 828 0.0
> Ahg330471 jgi|Araly1|330471|fgenesh1_pm.C_scaffold_7002698
Length=978
Score = 828 bits (448), Expect = 0.0
Identities = 651/744 (88%), Gaps = 33/744 (4%)
Strand=Plus/Plus
Query 80 ATGTATCACCAAAATCTGATTTCATCGACCCCAAACCAAAATTCTAATCCTCACGATTGG 139
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1 ATGTATCACCAAAATCAGATTTCATCAACCCCAAACCAAAATTCCGATCCTCACAATTGG 60
Query 140 GATATTCAAAATCCTTTATTTTCCATACATCCTTCAGCTGAAATACCCTCAAAATATCCC 199
||||||||||||| ||||||||||| |||||||||| |||||||||| ||||| ||||
Sbjct 61 GATATTCAAAATCGTTTATTTTCCAGACATCCTTCAATTGAAATACCCACAAAAAATCCA 120
Query 200 TTTATGGGTATCACTTCTTGCCCAAACACCAATGTTTTTGAGGAATTTCAATATAAAATA 259
||||||||||| | ||||| ||||||||| ||||||||||||| |||||||||||| |||
Sbjct 121 TTTATGGGTATAAATTCTTTCCCAAACACAAATGTTTTTGAGGGATTTCAATATAACATA 180
Query 260 ACCAACGATC-AAAACTTTCCAACGACCTATAACACCCCATTCCCTGTAATATCTGAAGG 318
|||||||||| | || ||||||| |||||||||||||| ||| ||||||| |||||||||
Sbjct 181 ACCAACGATCTAGAA-TTTCCAATGACCTATAACACCCAATTTCCTGTAACATCTGAAGG 239
Query 319 TATATCATACAATATGCATGATGTTCAAGAGAATACTATGTGTGGTTATACTGCTCACAA 378
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 240 TATATCATACAATATGCATGATTTTCAGGAGAATACTATGTGTGGTTATACTGCTCACAA 299
Query 379 TCAAGGGCTTATCATTGGTTGTCACGAGCCAGTTCTTGTTCATGCCGTGGTTGAGTCTCA 438
||||||||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 300 TCAAGGGCTTATCATTGGTTGTCACGAGCCAGTTCATG---ATG---TGGTTGAGTCTCA 353
Query 439 GCAATTTAATGTCCCACAGTCAGAGGATATCAATTTAGTATCTCAGAGTGAGAGGGTCAC 498
||||||||||||| || ||||||||| |||||||||| ||||||||||| ||||||||||
Sbjct 354 GCAATTTAATGTCTCAAAGTCAGAGGGTATCAATTTAATATCTCAGAGTAAGAGGGTCAC 413
Query 499 AGAAGATAAGGTAATGTTCAAAAC-CGATCA---TAAGAAGAAAGACATTATTGGCAAAG 554
| |||| | | | | || | || ||| ||||||||||||||||||| |||||
Sbjct 414 AAAAGAGACC--A-T-T--AACAGGCG-TCAAGATAAGAAGAAAGACATTATTATCAAAG 466
Query 555 GGCAATGGACTCCTACTGAAGACGAGTTGTTGGTGAGAATGGTGAAAAGTAAAGGAACGA 614
||||||||||| |||||||||||||| ||||||||| |||||||||| |||| |||| |
Sbjct 467 GGCAATGGACTGCTACTGAAGACGAGATGTTGGTGAAAATGGTGAAACGTAATGGAATAA 526
Query 615 AAAACTGGACATCAATCGCAAAAATGTTCCAAGGACGAGTAGGAAAACAATGTCGAGAGA 674
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 527 AAAATTGGACATCAATCGCAAAAATGTTCCAAGGACGAGTAGGTAAACAATGGC-A---- 581
Query 675 GGTGGCATAACCATCTTCGACCAAACATCAAGAAAAATG-ATTGGAGTGAAGAAGAAGAT 733
|| | ||||||| | || ||||||| |||||| || |||||||||||||||||
Sbjct 582 -----CA-A-CCATCTTGGTCCGGACATCAAAAAAAATTTAT-GGAGTGAAGAAGAAGAT 633
Query 734 CAAATACTTATTGAAGTCCACAAGATAGTTGGCAACAAATGGACCGAAATTGCTAAAAGA 793
| ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 634 CGAATACTTATTGAAGTCCACAAGATAATAGGCAATAAATGGACCGAAATTGCTAAAAGA 693
Query 794 CTTCCTGGACGAAGTGAAAATATT 817
|| |||||||||||||||||||||
Sbjct 694 CTCCCTGGACGAAGTGAAAATATT 717
Score = 265 bits (143), Expect = 7e-70
Identities = 190/212 (90%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 951 TGAACAGAGAAGTTGATTCTATAACTGCAAACTCGGAAATTGAT-AGTACCAGATGTGAG 1009
|||||||||||||||||||||||||| ||||||| ||||||| | | ||||| |||||||
Sbjct 770 TGAACAGAGAAGTTGATTCTATAACTACAAACTCAGAAATTG-TCACTACCAAATGTGAG 828
Query 1010 AATATTGTTGACGAGGTGATGAATCTGAATCTGCACGCTACAACGTCCGTTTATGTTCCG 1069
||||||||||| |||||||||| | ||||| || | |||||||||| | ||||||||||
Sbjct 829 AATATTGTTGATGAGGTGATGACTTTGAATATGGATGCTACAACGTGCTTTTATGTTCCA 888
Query 1070 GAGCAAGCAGTGTT-GACATGGGGTTATGATTTTACAAAATGTT-ATGAACCCATGGATG 1127
||||||||| | || |||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 889 GAGCAAGCA-TCTTTGACATGGGGTTATGATTTTACAAAAT-TTCATGAACCCATAGATG 946
Query 1128 ATACATGGATGCTCATGAATGGTTGGAATTAA 1159
|||||||||||||||||| |||||||||||||
Sbjct 947 ATACATGGATGCTCATGACTGGTTGGAATTAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44832550392
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5