BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40370.2
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947726 jgi|Araly1|947726|scaffold_703955.1 518 4e-146
> Ahg947726 jgi|Araly1|947726|scaffold_703955.1
Length=376
Score = 518 bits (280), Expect = 4e-146
Identities = 296/304 (97%), Gaps = 0/304 (0%)
Strand=Plus/Plus
Query 423 TTTGCAGCAAGACTTATTGTCCATATTGCGTGAGAGTGAAGGAGCTTTTGCAACAATTGG 482
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 70 TTTTCAGCAAGACTTATTGTCCGTATTGCGTGAGAGTGAAGGAGCTTTTGCAACAATTGG 129
Query 483 GAGCTAAGTTCAAGGCCGTTGAGCTCGACACCGAAAGTGATGGTAGCCAAATTCAATCAG 542
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GAGCTAAATTCAAGGCCGTTGAGCTCGACACCGAAAGTGATGGTAGCCAAATTCAATCAG 189
Query 543 GTCTCGCAGAATGGACAGGACAACGTACCGTGCCTAATGTGTTTATAGGAGGAAATCACA 602
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 190 CTCTCGCAGAATGGACAGGACAACGCACCGTGCCTAATGTGTTTATAGGAGGAAATCACA 249
Query 603 TCGGTGGCTGTGATGCAACATCAAACTTGCATAAAGATGGGAAGTTGGTTCCGCTGTTAA 662
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 250 TCGGTGGCTGCGATGCAACAACAAACTTGCATAAAGATGGGAAGTTGGTTCCGCTGTTAA 309
Query 663 CTGAAGCTGGAGCGATCGCAGGAAAGACTGCAACAACTTCTGCTTAAGAGCACATCCATA 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CTGAAGCTGGAGCGATCGCAGGAAAGACTGCAACAACTTCTGCTTAAGAGCACATCCATT 369
Query 723 TGTG 726
||||
Sbjct 370 TGTG 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34920591972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5