BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40380.1
Length=2444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891656 jgi|Araly1|891656|Al_scaffold_0007_3642 3070 0.0
> Ahg891656 jgi|Araly1|891656|Al_scaffold_0007_3642
Length=1956
Score = 3070 bits (1662), Expect = 0.0
Identities = 1859/1957 (95%), Gaps = 2/1957 (0%)
Strand=Plus/Plus
Query 350 ATGCGTTGCCTCACAAAAACAAGATCGTTTCATTATGTCATCATTTTTTATTCCTTCTTC 409
|||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGCCTTGCCTCACAAAAACAATACCGTTTCATTATGTCATCATTGTTTATTCCTTCTTC 60
Query 410 TTTTTACCGTTCTTGTCGTCCTCCTCCGACGATCAAAGAACCACCGTCTCCGGTCTTTTC 469
|||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||
Sbjct 61 TTTTTACCGTTCTTGTCGTCCTCCGACGACGATCTAAGAACCACCGTCTCTGGTCTTTTC 120
Query 470 TGTGGCGGACGTAGCAAATCCTCCGCAGATCCAAACTACATCCCAACTTTCGTCGAAGAT 529
|| |||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 121 TGCGGCGGACGAAGCAAATCCTCCACAGATCCAAATTACATCCCAACGTTCGTCGAAGAT 180
Query 530 ATGCATTCACTATCTCTAAAACTAACTACACGCCGTTTCGCAACTGAATCATTAAACTCC 589
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 ATGCATTCACTATCTCTTAAACTAACTACACGCCGTTTCGCAACAGAATCATTAAACTCC 240
Query 590 ACTACATCTATCTACGCTCTGATCCAATGCCACGACGATCTCTCACCGTCCGATTGTCAG 649
|| | ||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 241 ACGCCGTCTATCTACGCACTGATCCAATGCCACGACGATCTTTCACTGTCCAATTGTCAG 300
Query 650 CTCTGTTACGCGATTGCACGCACCCGCATCCCTCGTTGTCTCCCTTCTTCCTCCGCAAGA 709
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 301 CTCTGTTACGCGATTGCACGCACGCGCCTCCCTCGTTGTCTACCTTCTTCCTCCGCAAGA 360
Query 710 ATCTTCCTCGACGGTTGTTTCCTCCGTTACGAAACTTACGAGTTTTACGATGAATCAGTC 769
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 ATCTTCCTCGACGGTTGTTTCCTCCGTTATGAAACTTACGAGTTTTACGATGAATCAGTC 420
Query 770 TCCGATGCGTCGGATAGTTTTTCTTGTAGCAACGACACCGTTTTGGATCCTCGGTTCGGG 829
|||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 TCCGATACGTCCGATAGTTTTTCTTGTAGCAACGACACCGTTTTGGATCCTCTGTTCGGG 480
Query 830 TTTCAAGTTTCGGAAACTGCGGCGAGAGTCGCGGTTAGAAAAGGAGGGTTTGGAGTCGCC 889
|||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTCGCGTTTCGGAAACCGCGGTGAGAGTCGCGGTTAGAAAAGGAGGGTTTGGAGTCGCC 540
Query 890 GGAGAGAATGGAGTACACGCTCTTGCTCAGTGTTGGGAGAGTTTGGGGAAAGAAGATTGT 949
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAGAGAGTGGAGTACACGCGCTTGCTCAGTGTTGGGAGAGTTTGGGGAAAGAAGATTGT 600
Query 950 AGGGTTTGTTTGGAGAAAGCTGTTAAAGAAGTGAAACGCTGCGTTTCGAGGAGAGAAGGA 1009
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 601 AGGGTTTGTTTGGAGAAAGCTATTAAAGAAGTGAAACGATGCGTTTCGAGGAGAGAAGGA 660
Query 1010 AGAGCTATGAATACAGGATGTTATCTTAGATACTCTGATCATAAATTCTATAATGGTGAT 1069
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAGCGATGAATACAGGGTGTTATCTTAGATACTCTGATCATAAATTCTATAATGGTGAT 720
Query 1070 GGACATCATAAATTTCATGTGCTTTTTAACAAAGGAGTCATCGTTGCTATTGTCTTGACA 1129
||||||||||| ||||||||| ||||||||||||| |||||||| ||||| |||||||||
Sbjct 721 GGACATCATAATTTTCATGTGTTTTTTAACAAAGGTGTCATCGTGGCTATAGTCTTGACA 780
Query 1130 ACGTCAGCATTCGTCATGCTCATCCTCTTGGCAACGTATGTCATTATGACAAAAGTATCA 1189
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 781 ACGTCAGCATTCGTCATGCTCATTCTCTTGGCAACGTATGTCATTATGATAAAAGTATCA 840
Query 1190 AAGACTAAACAAGAAAAAAGAAACTTAGGTTTGGTTTCGAGAAAATTCAACAACTCAAAG 1249
||||| || |||||| || ||||||| ||| | |||||||||||||||||||||||||||
Sbjct 841 AAGACCAAGCAAGAACAACGAAACTTGGGTCTAGTTTCGAGAAAATTCAACAACTCAAAG 900
Query 1250 ACGAAGTTCAAGTACGAGACTCTAGAGAAGGCAACAGATTACTTCAGTCACAAGAAAATG 1309
|||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 901 ACGAAGTTCAAGTACGAGACTCTAGAGAAGGCTACAGATTACTTCAGCCCCAAGAAAATA 960
Query 1310 CTAGGGCAAGGAGGAAATGGCACCGTTTTCTTAGGAATCCTTCCAAATGGTAAGAACGTG 1369
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 CTAGGGCAAGGAGGAAATGGCACCGTTTTCTTAGGAATCCTTCCAAATGGCAAGAACGTG 1020
Query 1370 GCTGTGAAAAGATTAGTGTTTAACACAAGAGACTGGGTAGAAGAATTCTTCAACGAAGTG 1429
|| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 GCCGTGAAGAGATTAGTGTTCAACACAAGAGAATGGGTAGAAGAATTCTTCAACGAAGTG 1080
Query 1430 AATCTAATTAGTGGAATCCAACATAAGAACCTCGTCAAGCTTCTTGGTTGTAGCATTGAA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 AATCTAATTAGTGGAATCCAACATAAGAACCTCGTCAAGCTTCTTGGTTGTAGTATTGAA 1140
Query 1490 GGACCGGAGAGTCTCTTGGTCTATGAGTACGTGCCTAACAAAAGCCTCGACCAATTTCTC 1549
||||| ||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1141 GGACCCGAGAGTCTCTTGGTCTACGAATACGTACCTAACAAAAGCCTCGACCAATTTCTC 1200
Query 1550 TTTGATGAGAGTCAAAGCAAGGTCTTAAACTGGAGCCAGAGGCTAAACATAATCCTTGGA 1609
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1201 TTTGATGAGACTCAAAGCAAGGTCTTAAACTGGAGTCAGAGGCTAAACATAATCCTGGGA 1260
Query 1610 ACAGCGGAGGGACTGGCTTACCTACACGGTGGATCTCCCGTGAGGATTATTCATCGTGAC 1669
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1261 ACAGCGGAGGGACTGGCTTACCTACACGGTGGATCTCCGGTGAGGATTATTCATCGTGAC 1320
Query 1670 ATCAAAACCAGTAATGTTCTTCTAGACGACCAGCTCAATCCTAAGATCGCTGATTTCGGT 1729
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1321 ATCAAAACTAGTAATGTTCTTCTAGACGACCAGCTCAATCCAAAGATCGCTGATTTCGGT 1380
Query 1730 TTGGCTCGATGTTTTGGTCTGGACAAAACTCATCTTAGCACCGGCATCGCAGGAACTCTA 1789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTGGCTCGATGTTTTGGTCTGGACAAAACTCATCTTAGCACCGGCATCGCAGGAACTCTA 1440
Query 1790 GGTTACATGGCTCCAGAGTATGTTGTTAGAGGACAGTTAACGGAGAAAGCAGACGTTTAT 1849
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGTTATATGGCTCCAGAGTATGTTGTTAGAGGACAGTTAACGGAGAAAGCAGACGTTTAT 1500
Query 1850 AGCTTCGGAGTTCTTGTTCTCGAGATTGCTTGTGGAACAAGAATCAATGCTTTCGTACCA 1909
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 1501 AGCTTCGGAGTTCTTGTTCTCGAGATTGCTTGTGGAACAAGAAACAACGCTTTCGAACCA 1560
Query 1910 GA-GACAGGTCACCTCCTACAAAGAGTCTGGAACCTTTATACACTGAATAGACTGGTCGA 1968
| ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1561 -ATGACAGGTCATCTCCTACAAAGAGTCTGGAACCTCTATACACTGAATAGATTGGTCGA 1619
Query 1969 AGCTCTTGACCCATGTCTAAAAGATGAGTTTCTTCAAGTGCAAGGCAGCGAAGCTGAAGC 2028
||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1620 AGCTCTTGACCAATGTCTAAAAGATGAGTTTCTTCATGTGCAAGGCAGCGAAGATGAAGC 1679
Query 2029 TTGTAAAGTTCTTCGTGTGGGATTGTTATGCACACAAGCTTCTCCGTCGCTAAGACCGTC 2088
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||
Sbjct 1680 TTGTAAAGTTCTTCGTGTGGGATTGTTATGCACACAAGCTTCTCCATGGCTGAGACCATC 1739
Query 2089 GATGGAAGAAGTGATCCGTATGCTAACCGAGAGAGATTACCCGATTCCATCTCCAACCAG 2148
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1740 GATGGAAGAAGTGATTCGTATGTTAACCGAGAGAGATTACCCGATTCCATCTCCAACCAA 1799
Query 2149 TCCTCCCTTCTTGAGGGTTAGCTCTCTAACTACAGACCTAGAGGGCAGTAGTACTATATC 2208
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1800 TCCTCCCTTCTTGAGGATTAGCTCTCTAACTACAGACCTAGAGGGCAGCAGTACTATATC 1859
Query 2209 TCATAGCACCAATAGTACTACGACGTTTAACACGATGGTCAAAACCGATCAAGCTTCTTA 2268
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TCAAAGCACCAATAGTACTACAACGTTTAACACGATGGTCAAAACCGATCAAGCTTCTTA 1919
Query 2269 TACTTCTTCAGAATCTTCTACTACTCGTACAATCTAA 2305
||| |||||||||||||||||||||||||| ||||||
Sbjct 1920 TACCTCTTCAGAATCTTCTACTACTCGTACTATCTAA 1956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92102212410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5