BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40382.1

Length=475
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493950 jgi|Araly1|493950|fgenesh2_kg.7__3383__AT5G40382.1         523    4e-148


> Ahg493950 jgi|Araly1|493950|fgenesh2_kg.7__3383__AT5G40382.1
Length=376

 Score =  523 bits (283),  Expect = 4e-148
 Identities = 361/395 (91%), Gaps = 19/395 (5%)
 Strand=Plus/Plus

Query  1    ATGGCTAATGTTCAGAAGATCGGAAAGGCTGTTTATAAAGGACCAAGCGTAGTTAAAGAG  60
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTAATGTTCCGAAGATCGGAAAGGCTGTTTATAAAGGACCAAGCGTAGTTAAAGAG  60

Query  61   ATCATATATGGAATAACGCTCGGCTTTGCGGTTGGAGGGCTGTGGAAAATGCATCATTGG  120
            ||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct  61   ATCATATATGGAATAACACTAGGCCTTGCGGTTGGAGGGCTGTGGAAAATGCATCATTGG  120

Query  121  AACAACCAAAGACGAACGAAGGAGTTCTATGATTTACTCGAGAAGGGAGAAATTAGTGTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  121  AACAACCAAAGACGAACGAAGGAGTTCTATGATTTACTCGAGAAGGGAGAAATCAGTGTT  180

Query  181  GTCGTCGAAGATGAGTAGTTTGCGTGAATTGTTATCTTTGGAATCAAGAACCAAAAGGAA  240
            |||||||||||||||||||| |    ||  |  |||     ||    |||||||||||||
Sbjct  181  GTCGTCGAAGATGAGTAGTT-G----AA--G--ATC-----AA----GAACCAAAAGGAA  222

Query  241  TGTGTCTTGGCTTGTGTGAGGTATGATTTCAAACGTTTTGTTTGAATATATTTTAGAACA  300
            || |||||||||||||||||||||||||||||  ||||||||| |||| |||||||||||
Sbjct  223  TGCGTCTTGGCTTGTGTGAGGTATGATTTCAATGGTTTTGTTTCAATAAATTTTAGAACA  282

Query  301  AATGAGAGTCTACAAGATGTCTTTAATGGTTAGTGTTTTGTTGATGAAGGATATATTGTA  360
            | ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  283  A-TGAGAGTTTACAAGATATCTTTAATGGTTAGTGTTTTGTTGATGAAGGATATATTGTA  341

Query  361  ATCAGTTTACAAAATCTTTGTTTGTACTGCTACCG  395
            |||||||| ||||| || |||||||||||||||||
Sbjct  342  ATCAGTTTGCAAAAGCTATGTTTGTACTGCTACCG  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17208170639


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5