BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40400.1
Length=2404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493948 jgi|Araly1|493948|fgenesh2_kg.7__3381__AT5G40400.1 3123 0.0
> Ahg493948 jgi|Araly1|493948|fgenesh2_kg.7__3381__AT5G40400.1
Length=2346
Score = 3123 bits (1691), Expect = 0.0
Identities = 2167/2390 (91%), Gaps = 59/2390 (2%)
Strand=Plus/Plus
Query 3 ATTTATGAAGAATCTCGTTTCAAACCTTCGATTTTTCTCCTCTTATTCTTCTTCGATAGT 62
||||||||||| ||||||||||| ||||||||||||| | | ||||||||||||||
Sbjct 1 ATTTATGAAGAGGCTCGTTTCAAAGCTTCGATTTTTCT-C-C----TCTTCTTCGATAGT 54
Query 63 TCCGCGATGTAGTAACATACCTAAACCAATTCTCAATCCTCTCTACAATTTACTTCCCCA 122
||| ||||| | || |||||||||||||| ||||||||||| || ||| ||||||||||
Sbjct 55 TCCACGATGCAACAATATACCTAAACCAATCCTCAATCCTCTTTATAATCTACTTCCCCA 114
Query 123 GTCTCAAAACCCTAGTAAAATCGTGGATGTTATCTGTTCAACACTCAACCACAGTGATTA 182
| |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
Sbjct 115 GACTCAAAACCCTAATAAAATCGTAGATGTTATCTGTTCAACACTCAACCACCGTGATCA 174
Query 183 TTCCGTCTTGTTACCTAACCTTCGTGACGAGGTGAAATCGCTGATTCCTCATTTGGGTTA 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 175 TTCCGTCTTGTTACCTAACCTTCGTGACGAGGTTAAATCGCTGATTCCTCATTTGGGTTA 234
Query 243 TCCTGAAATCTCGAGGGTTTTGCTTAGGTTTCAGTCTGATGCTTCTCGAGCTATTACGTT 302
|||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 235 TCCTGAAATCTCTAGGGTTTTGCTTAGGTTTCAATCTGATGCTTCTCGAGCTCTTACGTT 294
Query 303 CTTTAAATGGGTTAAATTTGATTTGGGGAAGAGGCCTAATGTTGGTAACTACTGTTTGTT 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 295 CTTTAAATGGGTTAAATTTGATTTGGGGAAGAGACCTAATGTTGGTAACTACTGTTTGTT 354
Query 363 GCTTCACATTCTTG-TGTCTTCTAAGAAGTTTCCTTTAGCTATGCAGTTTCTCTGTGAAT 421
|||||||||||||| | || |||||||||||||||||||||||||| ||||||||||| |
Sbjct 355 GCTTCACATTCTTGCT-TCGTCTAAGAAGTTTCCTTTAGCTATGCAATTTCTCTGTGAGT 413
Query 422 TGATTGAATTGACATCTAAGAAAGAAGAAGTGGATGTGTTCAGAGTTTTGGTTTCTGCTA 481
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 414 TGATTGAATTGACATCTAAGAAAGAAGAAGAGGATGTGTTCAGTGTTTTGGTTTCTGCTT 473
Query 482 CTGATGAATGTAATTGGGATCCTGTTGTTTTTGATATGCTTGTGAAAGGTTATCTGAAAT 541
|||||||||||||||||||||||||| |||| ||||||||||| || ||||||||||| |
Sbjct 474 CTGATGAATGTAATTGGGATCCTGTTATTTTCGATATGCTTGTCAAGGGTTATCTGAAGT 533
Query 542 TGGGTTTGGTAGAAGAAGGGTTTAGGGTTTTTA-GAGAGGTGCTTGATTCCGGTTTTAGT 600
|||||||||||||||| |||||| | |||| || ||||| ||||||| |||||| ||
Sbjct 534 TGGGTTTGGTAGAAGACGGGTTTTCGACATTTAGGA-AGGTGATTGATTCGGGTTTTCGT 592
Query 601 GTTAGTGTTGTTACTTGTAATCATCTACTGAATGGGTTGTTGAAGTTGGATTTGATGGAG 660
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 593 GTTAGTGTTGTTACTTGTAATCATCTATTGAATGGGTTGCTGAAATTGGATTTGATGGAG 652
Query 661 GATTGTTGGCAAGTGTATAGTGTGATGTGTAGAGTTGGAATCCATCCCAATACGTATACG 720
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 653 GATTGTTGGCAAGTGTATAATGTGATGTGTAGAGTTGGCATCCATCCCAATACGTATACG 712
Query 721 TTCAACATTCTTACTAATGTGTTCTGCAACGATTCAAATTTTCGTGAAGTTGATGACTTT 780
|||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 713 TTCAACATTCTTACGAATGTGTTCTGCAACAATTCGAATTTTCGTGAAGTGGATGACTTT 772
Query 781 TTGGAGAAGATGGAAGAAGAAGGTTTTGAGCCTGATTTGGTTACTTATAATACGTTAGTG 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTGGAGAAGATGGAGGAAGAAGGTTTTGAGCCTGATTTGGTTACTTATAATACGTTAGTG 832
Query 841 AGTAGTTATTGTAGAAGAGGAAGGTTGAAAGAAGCGTTTTATCTGTATAAGATCATGTAT 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 833 AGTAGTTATTGTAGAAGAGGAAGGTTGAAAGAAGCGTTTTATCTGTACAAGATTATGTAT 892
Query 901 AGGCGTCGTGTTGTGCCTGATTTAGTTACTTATACATCGCTTATCAAAGGTCTTTGTAAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 AGGCGTCGTGTTGTGCCTGATTTAGTTACTTATACATCGCTTATCAAAGGTCTTTGTAAA 952
Query 961 GACGGGAGAGTTAGAGAAGCTCATCAGACTTTTCACAGGATGGTAGACAGAGGAATTAAG 1020
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 953 GACGGGAGAGTTAGAGAAGCTCATCAGACGTTTCATAGGATGGTAGACAGAGGAATTAAG 1012
Query 1021 CCTGATTGCATGTCTTACAATACTCTTATTTATGCTTATTGCAAAGAAGGAATGATGCAA 1080
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1013 CCTGATTGTATGTCTTACAATACTCTTATCTATGCTTATTGCAAAGAAGGAATGATGCAA 1072
Query 1081 CAATCGAAGAAGCTGTTACATGAAATGCTTGGGAATAGCGTTGTTCCCGACAGGTTTACT 1140
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1073 CAATCGAAGAAGCTGTTACATGAAATGCTTGGGAATAGCGTTGTTCCGGATAGGTTTACT 1132
Query 1141 TGTAAGGTTATAGTTGAAGGATTTGTGAGAGAAGGACGGTTACTTTCTGCTGTTAATTTT 1200
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1133 TGTACGGTTATAGTTGAAGGATTTGTGAGAGAAGGACGGTTACTTGCTGCTGTTAATTTT 1192
Query 1201 GTTGTCGAGCTTAGAAGGTTAAAGGTTGAT-ATCCCATTTGAAGTTTGCGACTTTCTGAT 1259
|||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1193 GTTGTCGAACTTAGAAGGTTAAAGGTT-ATCATCCCAATTGAAGTTTGCGACTTTCTGAT 1251
Query 1260 AGTAAGTTTATGCCAGGAAGGTAAACCATTTGCAGCAAAGCATCTATTAGATCGAATTA- 1318
| |||||||||||||||||||||||||||||||||||||||| | ||||| |||| |
Sbjct 1252 AAAAAGTTTATGCCAGGAAGGTAAACCATTTGCAGCAAAGCATTTGTTAGAAAGAATCAG 1311
Query 1319 TCGAAGAGGAAGGTCACGAGGCTAAACCAGAGACTTACAATAACTTAATTGAGTCTTTGT 1378
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1312 T-AAAGAGGAAGGTCACGAGGCTAAACCAGAGACTTACAATAACTTAATCGAGTCTTTGT 1370
Query 1379 CCCGTTGTGATGCTATAGAGGAGGCATTGGTTCTAAAAGGCAAACTCAAAAACCAGAATC 1438
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1371 GCCGTTGTGATGCTATTGAAGAGGCATTGGTTCTAAAAGGGAAACTCAAAAACCAGAATC 1430
Query 1439 AAGTACTTGATGCCAAGACATACCGAGCTCTTATAGGCTGCTTGTGTAGGATTGGTAGGA 1498
|||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1431 AAGTACTTGATGTCAAGACATACCGAGCTCTTATTGGCTGCTTATGTAGGATTGGTAGGA 1490
Query 1499 ACCGTGAAGCCGAGTCTTTGATGGCAGAAATGTTTGATTCTGAAGTGAAACCGGATTCAT 1558
||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 1491 ACCGTGAAGCCGAGTCTTTGATGGCGGAAATGCTTGATTCAGAAGTGAAACCGGATTCAT 1550
Query 1559 TTATATGCGGGGCTTTGGTTTATGGATACTGCAAGGAATTGGATTTCGATAAAGCTGAGA 1618
|||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 1551 TTATATGCGGGGCTTTGGTTAATAGATACTGCAAGGAATTGGATTTCGATAAAGCCGAGA 1610
Query 1619 GACTATTGAGTTTGTTTGCTATGGAGTTTAGAATCTTTGACCCAGAGAGTTACAATTCGC 1678
| ||| | ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1611 GTCTACTAAGTTTCTTTGCTATGGAGTTTAGAATCTTTGACACAGTGAGTTACAATTCGC 1670
Query 1679 TTGTTAAGGCTGTT-TGTGAAACGGG-ATGTGGATATAAGAAAGCGTTAGAGCTTCAAGA 1736
| ||||| || || ||||||||||| || |||||| | |||| |||||| ||||| ||
Sbjct 1671 TGGTTAATGC-ATTATGTGAAACGGGAAT-CGGATATGATAAAGTGTTAGATCTTCAGGA 1728
Query 1737 AAGAATGCAAAGACTCGGGTTTGTTCCAAACAGGTTAACTTGTAAGTACTTGATCCAAGT 1796
||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1729 AAGAATGCAGAGACTTGGGTTTGTTCCAAACAGCTTAACCTGTAAGTACTTGATCCAAGT 1788
Query 1797 GTTGGAACAGCCTTCTTTGCCCAATCATCTGCCTGAGAATTGAAGCAACGCTTGATGCGA 1856
||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 1789 GTTGGAACAGCCTTCTTTGCCAAATCATCCGCCTGAGAATTGAAGCAAAGCTTGATGCGA 1848
Query 1857 TGAAATTTGTATTCCTTAATCTTGGCCAGATGCGTAACTTAAAGAAAATACAAACTTAGA 1916
||||| |||||||||| |||||||||||| | | || |||||| |
Sbjct 1849 TGAAACTTGTATTCCTGGTTCTTGGCCAGAT--G---C---------AT---AACTTA-A 1890
Query 1917 GGATGAGTACTGCGGATCGTTTTAAGTGGTGGTGAAGTCTGTAGGATCTCGC-ACAAAGG 1975
| || | |||||||||||| ||||||| || |||||| ||||| | | ||| |
Sbjct 1891 --A-GA--A---AGGATCGTTTTAACTGGTGGTTTAGCCTGTAGAATCTCTCGA-AAAAG 1941
Query 1976 GTCCAGTACTTGCTTAGCATCC-TGGAGGAAAATGTTGTCCTTATAATTCAGTGCCAAGA 2034
||| |||||||||||||||||| | |||||||||| ||||||| | |||||||||| |||
Sbjct 1942 GTCTAGTACTTGCTTAGCATCCAT-GAGGAAAATGATGTCCTTGTGATTCAGTGCCCAGA 2000
Query 2035 GCATTTGCCTCAGCTTTTGCTGCTTTGTTTGCTGTTGAAAGCTTACCTCGACTCCAAAAC 2094
|||||| ||||||||| ||||| || | |||||| | |||| |||||| |||||||| |
Sbjct 2001 GCATTTACCTCAGCTTCCGCTGCATTCTCTGCTGTCGGAAGCCTACCTCAACTCCAAAGC 2060
Query 2095 ACAAGTCTTCTCTGTTGATCAAACAAGAGCCAAGCAATGCCGATCGGTGTGTTCTTATTG 2154
||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 2061 ACAAGTCTTCTCTGTTGATCAAACAAGAGCCAAGCTATGCCGATTTGTGTGTTCGCATTG 2120
Query 2155 ATACAGGATGCATCCAGATAACAGGTT-TATTGAGTTAGTTGGAACTAAAGGATGCACCT 2213
|||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||
Sbjct 2121 ATACAGGATGCATCCAGATAACAG-TAATATTGACT-AGTTGGAACTAAAGGATGCACCT 2178
Query 2214 GAAACGGTTGCAGATTGCCAC-AATTTTGTATTCTGTAGTAATTGTAAGAGTTTGAGAAT 2272
|||| |||||||||||||| | ||||||||| ||||||| |||| ||||||||||| |
Sbjct 2179 GAAATGGTTGCAGATTGCCTCCAATTTTGTAGTCTGTAGCAATTCCAAGAGTTTGAGCAG 2238
Query 2273 GATTGTCTATTGGACCCCTTGTCTTGTGTCTTGTGGTTT-CGTTCTTTCCATGGATGTGA 2331
|||||||| || | ||||| || |||||| |||||| | || ||||||||||| |||
Sbjct 2239 GATTGTCTTTTTTAATCCTTGCCTCATGTCTTCTGGTTTGC-TTATTTCCATGGATTTGA 2297
Query 2332 A-GTTAAAGTA--AA-CTTTGTGTAGTTGCAGCAGTTTCTTTGTAACTCT 2377
| || |||||| || ||||||||||||| |||| |||||||||||||||
Sbjct 2298 AAGT-AAAGTATCAAACTTTGTGTAGTTGAAGCAATTTCTTTGTAACTCT 2346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90578602610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5