BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40420.1 Length=872 Score E Sequences producing significant alignments: (Bits) Value Ahg493945 jgi|Araly1|493945|fgenesh2_kg.7__3378__AT5G40420.1 1249 0.0 > Ahg493945 jgi|Araly1|493945|fgenesh2_kg.7__3378__AT5G40420.1 Length=824 Score = 1249 bits (676), Expect = 0.0 Identities = 776/825 (94%), Gaps = 3/825 (0%) Strand=Plus/Plus Query 20 AAAACAATTT-CTCATTAGCTTACAATGGCGGATACACACCGTGTCGACCGTACTGATAG 78 ||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 1 AAAAC-ATTTCCTCATTATCTTACAATGGCGGATACACATCGTGTCGACCGTACTGAAAG 59 Query 79 ACACTTTCAATTTCAGTCGCCCTATGAAGGCGGCCGAGGTCAAGGTCAGTATGAAGGTGA 138 ||||| |||||||||||||| |||||||||||||||| ||| |||||||||||||| Sbjct 60 GCACTTGCAATTTCAGTCGCCGTATGAAGGCGGCCGAGTTCATCTTCAGTATGAAGGTGG 119 Query 139 CCGTGGTTACGGTGGTGGCGGTTACAAGAGCATGATGCCTGAAAGTGGCCCATCTAGTAC 198 | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 120 CGGCGGTTACGGTGGCGGCGGTTACAAGAGCATGATGCCTGAAAGTGGCCCATCTAGCAC 179 Query 199 CCAAGTATTGTCCCTGTTGATTGGAGTCCCTGTCGTCGGTTCGCTACTTGCCTTGGCTGG 258 ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| || Sbjct 180 CCAAGTATTGTCCCTTTTGATTGGCGTCCCTGTCGTTGGTTCGCTACTTGCCTTGGCCGG 239 Query 259 ATTACTTCTAGCTGGTTCGGTGATCGGCTTAATGGTTGCTTTACCACTATTTCTCCTCTT 318 ||||||||||||||||||||||||||||||||||| |||||||| | || |||||||| Sbjct 240 TTTACTTCTAGCTGGTTCGGTGATCGGCTTAATGGTCGCTTTACCGTTGTTCCTCCTCTT 299 Query 319 CAGCCCGGTTATAGTCCCAGCGGCTCTAACTATCGGGCTTGCAATGACAGGCTTTTTAGC 378 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 300 TAGCCCGGTTATAGTCCCAGCGGCTCTAACCATCGGGCTTGCAATGACGGGCTTTTTAGC 359 Query 379 CTCGGGGATGTTCGGTCTAACCGGGCTTAGCTCAATCTCATGGGTCATGAACTATCTTCG 438 |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 360 CTCGGGAATGTTTGGTCTAACCGGGCTAAGCTCAATCTCATGGGTCATGAACTATCTTCG 419 Query 439 TGGGACAAGGAGAACTGTGCCTGAGCAATTGGAGTATGCTAAGAGGAGAATGGCTGATGC 498 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TGGGACAAGGAGGACAGTGCCTGAGCAATTGGAGTATGCTAAGAGGAGAATGGCTGATGC 479 Query 499 GGTTGGCTACGCAGGACAAAAGGGCAAAGAAATGGGCCAGCATGTGCAGAACAAGGCCCA 558 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGTTGGCTACGCTGGGCAAAAGGGCAAAGAAATGGGCCAGCATGTGCAGAACAAGGCCCA 539 Query 559 AGATGTTAAACAATATGATATTTCTAAGCCACATGACACTACCACTAAGGGTCATGAGAC 618 |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 540 AGATGTTAAACAGTATGATATTTCTAAGTCACATGACACTACCACTAAGGGTCATGAGAC 599 Query 619 TCAGGGGAGGACGACGGCTGCATGATGAGTTTTCAGTATGAACGGTAGATATGTGTTTTC 678 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 600 TCAGGGGAGGACGACGGCTGCATGATGAGTTTTCGGTATGAACGGTAGATATGTGTTTTC 659 Query 679 ACTATTATGTCGTTTTTTCTGCATTTTCAATATGAtgttatgtgttttttttgtttggct 738 | ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AATATGATGTCCTTTTCTCTGCATTTTCAATATGATGTTATGTGTTTTTTTTGTTTGGCT 719 Query 739 ttttgttgaaccgtgt-atgtgttttatgtttttgtAAGCATGAAAGATCGCAAGTGTTG 797 |||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 720 TTTTGTTGAACCATGTTATGTGTTTTGTGTTTTTGTAAGCATGAAAGATCGCAAGTGTTG 779 Query 798 TGGTAATATTTGAATGTAATAATATGATAAGTTGATAAATCATGG 842 ||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 780 TGGTAATATTTGAGTGTTATAATATGATAAGTTGATAAATCATGG 824 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32290110699 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5