BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40420.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493945 jgi|Araly1|493945|fgenesh2_kg.7__3378__AT5G40420.1 1249 0.0
> Ahg493945 jgi|Araly1|493945|fgenesh2_kg.7__3378__AT5G40420.1
Length=824
Score = 1249 bits (676), Expect = 0.0
Identities = 776/825 (94%), Gaps = 3/825 (0%)
Strand=Plus/Plus
Query 20 AAAACAATTT-CTCATTAGCTTACAATGGCGGATACACACCGTGTCGACCGTACTGATAG 78
||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1 AAAAC-ATTTCCTCATTATCTTACAATGGCGGATACACATCGTGTCGACCGTACTGAAAG 59
Query 79 ACACTTTCAATTTCAGTCGCCCTATGAAGGCGGCCGAGGTCAAGGTCAGTATGAAGGTGA 138
||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||
Sbjct 60 GCACTTGCAATTTCAGTCGCCGTATGAAGGCGGCCGAGTTCATCTTCAGTATGAAGGTGG 119
Query 139 CCGTGGTTACGGTGGTGGCGGTTACAAGAGCATGATGCCTGAAAGTGGCCCATCTAGTAC 198
| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 CGGCGGTTACGGTGGCGGCGGTTACAAGAGCATGATGCCTGAAAGTGGCCCATCTAGCAC 179
Query 199 CCAAGTATTGTCCCTGTTGATTGGAGTCCCTGTCGTCGGTTCGCTACTTGCCTTGGCTGG 258
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 180 CCAAGTATTGTCCCTTTTGATTGGCGTCCCTGTCGTTGGTTCGCTACTTGCCTTGGCCGG 239
Query 259 ATTACTTCTAGCTGGTTCGGTGATCGGCTTAATGGTTGCTTTACCACTATTTCTCCTCTT 318
||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||
Sbjct 240 TTTACTTCTAGCTGGTTCGGTGATCGGCTTAATGGTCGCTTTACCGTTGTTCCTCCTCTT 299
Query 319 CAGCCCGGTTATAGTCCCAGCGGCTCTAACTATCGGGCTTGCAATGACAGGCTTTTTAGC 378
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 300 TAGCCCGGTTATAGTCCCAGCGGCTCTAACCATCGGGCTTGCAATGACGGGCTTTTTAGC 359
Query 379 CTCGGGGATGTTCGGTCTAACCGGGCTTAGCTCAATCTCATGGGTCATGAACTATCTTCG 438
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CTCGGGAATGTTTGGTCTAACCGGGCTAAGCTCAATCTCATGGGTCATGAACTATCTTCG 419
Query 439 TGGGACAAGGAGAACTGTGCCTGAGCAATTGGAGTATGCTAAGAGGAGAATGGCTGATGC 498
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGGACAAGGAGGACAGTGCCTGAGCAATTGGAGTATGCTAAGAGGAGAATGGCTGATGC 479
Query 499 GGTTGGCTACGCAGGACAAAAGGGCAAAGAAATGGGCCAGCATGTGCAGAACAAGGCCCA 558
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTTGGCTACGCTGGGCAAAAGGGCAAAGAAATGGGCCAGCATGTGCAGAACAAGGCCCA 539
Query 559 AGATGTTAAACAATATGATATTTCTAAGCCACATGACACTACCACTAAGGGTCATGAGAC 618
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 AGATGTTAAACAGTATGATATTTCTAAGTCACATGACACTACCACTAAGGGTCATGAGAC 599
Query 619 TCAGGGGAGGACGACGGCTGCATGATGAGTTTTCAGTATGAACGGTAGATATGTGTTTTC 678
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 TCAGGGGAGGACGACGGCTGCATGATGAGTTTTCGGTATGAACGGTAGATATGTGTTTTC 659
Query 679 ACTATTATGTCGTTTTTTCTGCATTTTCAATATGAtgttatgtgttttttttgtttggct 738
| ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATATGATGTCCTTTTCTCTGCATTTTCAATATGATGTTATGTGTTTTTTTTGTTTGGCT 719
Query 739 ttttgttgaaccgtgt-atgtgttttatgtttttgtAAGCATGAAAGATCGCAAGTGTTG 797
|||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 720 TTTTGTTGAACCATGTTATGTGTTTTGTGTTTTTGTAAGCATGAAAGATCGCAAGTGTTG 779
Query 798 TGGTAATATTTGAATGTAATAATATGATAAGTTGATAAATCATGG 842
||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 780 TGGTAATATTTGAGTGTTATAATATGATAAGTTGATAAATCATGG 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5