BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40450.1
Length=8957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493941 jgi|Araly1|493941|fgenesh2_kg.7__3374__AT5G40451.1 1404 0.0
> Ahg493941 jgi|Araly1|493941|fgenesh2_kg.7__3374__AT5G40451.1
Length=1068
Score = 1404 bits (760), Expect = 0.0
Identities = 975/1078 (90%), Gaps = 17/1078 (2%)
Strand=Plus/Plus
Query 31 TCTCTAATTATCTGGGTGATTCAGAATTTGTACTCACAGTAGGTTTCTTGCAGAGAAAAC 90
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TCTCTAATGATCTGGGTGATTCAGAATTAGTACTCACAGTAGGTTTCTTGCAGAGAAAAC 60
Query 91 AACTGTTCAAACCCTAAACCTCCAAATCATTTCTTCCCTGCATGAAAGATGGAAACTGGA 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACTGTTCAAACCCTAAACCTCCAAATCATTTCTTCCCTGCATGAAAGATGGAAACTGGA 120
Query 151 GTTGTCACCATCCAAGAACCAGTCTCTACAAAGACTGATGTTGGGGGAGTTCCTGCAGAA 210
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 121 GTTGTCACCATCCAAGAACCTGTCTCTACAAAGACTGATGTTGGGGGAGCTCCTGCAGGA 180
Query 211 GTAATACTTGAAAAATCATCCATGGAAGTACAAAAGGTAAACCTGAGTACTGTTCTTGAT 270
||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 181 GTAATACTTGACAAATCATCCATGGAAGTACATAATATAAACCTGAGTACTGTTCTTGAT 240
Query 271 GATGAGATCACAAGTGGCGCCGATCGTGGAAACAATATTATTACGGGAGAAGCAGATGTT 330
||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||
Sbjct 241 GATGAGATCACAAGTGGCG---ATCGCAGAAGCAATATTGTTACGGGAGAAGCAGATGTT 297
Query 331 GCAGAGGTTGTAAA-TGGTTCAGGGGATAAAGAAACCGAAGAATTAAAACGCGAAAATGG 389
| | | | | | | | | |||||| |||||||||||||||||||| ||| |||||| ||
Sbjct 298 GTAAATGAT-TCAGGTAGATCAGGGAATAAAGAAACCGAAGAATTAGAACACGAAAAAGG 356
Query 390 AGAAGCGACAAAGACTATCTCGGTTCTAGATGACAGTAAGATCGTTAAAGATGATCAAGA 449
|||||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||||
Sbjct 357 AGAAGCGACAAAGACTATTTCGGTTGTAGATGACAGTCAGATCGTTAATGATGATCAAGG 416
Query 450 ATCTATTGT-CGTTCGTGAACCTCAAAGCCTCAACGaaaaaaa-aGAAGATGAGAAGAT- 506
||| || | | ||| ||||||||||||| ||||| ||| || |||||||||||| ||
Sbjct 417 CTCT-TTCTTCATTCATGAACCTCAAAGCTTCAAC-AAAGCAACAGAAGATGAGAACATG 474
Query 507 AATCTTAAGTGATGTGACTTTAGAGAATAAGAAAGAAGAGGATACTACCGGAAAGCCAGA 566
||| ||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||
Sbjct 475 AAT-TTAAGTGATGTGACTTTAGAGAAAAAGAAAGAAGACGATATTAGCGGAAAGCCAGA 533
Query 567 AGAGGTTAGTGTCGAAAAGCCGGTAATAGAAGAAGATCAAACAGAAGCAAAACACTCACT 626
||||| |||||||||||||| ||||| ||||||||||| |||||| ||||||||| ||
Sbjct 534 GGAGGTAAGTGTCGAAAAGCCAGTAATTGAAGAAGATCACACAGAAACAAAACACTTACC 593
Query 627 AGAACAAGAAGAGGATATTGGTAACATCTCTAAGGTATGTGAAGAGATACCGATAAAGAC 686
||||||||| || || | || |||||||||||||| | ||||||||||||||||||||||
Sbjct 594 AGAACAAGAGGAAGAGACTGCTAACATCTCTAAGGAACGTGAAGAGATACCGATAAAGAC 653
Query 687 TGATGAA-GTAAGAGAAGAAACAGATTCAAGAACTGTTGAGACCTCTGTAAATGGAACAG 745
||| ||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 654 TGA-GAAAGTAAAAGAAGAAACAGATTCAAGTACTGTTGAGACCTCTGTAAATGGAACAG 712
Query 746 AGGCTGAGCACAATGCAACGGTTTCAGTAGAAGAAATCTCGAGGAACGGTGACAACACTG 805
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 713 AGGCGGAGCACAATGCAACGGTTTCAGTAGAAGAAATCTCGAGGAACGGTGACAACATTG 772
Query 806 TGAATGAAACAGTTTCAGAAGATCAAACCGCGACAGATGGTGAACCACTACATGATGTTG 865
|||||||||||||| |||||||||||| ||| |||||||| ||| |||||||||||||||
Sbjct 773 TGAATGAAACAGTTCCAGAAGATCAAAGCGCAACAGATGGGGAAACACTACATGATGTTG 832
Query 866 AAACTATAAAAAGAGAAGCAGAACCGTTT-TATAAGACAGTTGTAGAAGATGCTAAGATC 924
|||||| ||||| |||||||||||| ||| |||||||||||||||||||| ||||| |||
Sbjct 833 AAACTACAAAAACAGAAGCAGAACC-TTTGTATAAGACAGTTGTAGAAGACGCTAATATC 891
Query 925 GTGAATACTGAAGAAACTACAGCTCATGAATCTAAAATCTTGAAGGAAGATAATCATCAA 984
|| | || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GTTACTAATGAAGAAACTGCAGCTCATGAATCTAAAATCTTGAAGGAAGATAATCATCAA 951
Query 985 GAGGAGTATGCAGAATCGGTAGAAGCAACCAAAAACTCAGACGCA-GCAGAGCAAAGCTC 1043
|||||| |||||||| | |||||||||| ||||| |||||| | | |||||||||| |||
Sbjct 952 GAGGAGGATGCAGAACCAGTAGAAGCAATCAAAACCTCAGAAG-ATGCAGAGCAAATCTC 1010
Query 1044 ACGTGAAGTGACTGTAGACAAAGAAAAGGAAGAGGACATAATCCAAAACATAGAAGAG 1101
|||||||||||||||||||||| |||||||||| ||||||| |||||| | |||||||
Sbjct 1011 ACGTGAAGTGACTGTAGACAAACAAAAGGAAGATGACATAACCCAAAAAACAGAAGAG 1068
Score = 235 bits (127), Expect = 4e-60
Identities = 182/208 (88%), Gaps = 5/208 (2%)
Strand=Plus/Plus
Query 3744 TGTA-AAGACAGTTGTCCAAGACGCTAAGATCGTTAATAATGAAGAAACTACAGCTCATG 3802
|||| ||||||||||| |||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 860 TGTATAAGACAGTTGTAGAAGACGCTAATATCGTTACTAATGAAGAAACTGCAGCTCATG 919
Query 3803 AATCTGAAAGCTTGAAAGG-AGATAATCATCAGGAGAAAAATGCAGAACCAGTAGAAGCA 3861
||||| ||| |||| |||| |||||||||||| ||| | ||||||||||||||||||||
Sbjct 920 AATCTAAAATCTTG-AAGGAAGATAATCATCAAGAGGAGGATGCAGAACCAGTAGAAGCA 978
Query 3862 ACACAAAA-CTTAGATGATGCAGAGCAAATCTCACGTGAAGTGACTGTAGACACAGAAAG 3920
| ||||| || ||| ||||||||||||||||||||||||||||||||||||| | |||
Sbjct 979 A-TCAAAACCTCAGAAGATGCAGAGCAAATCTCACGTGAAGTGACTGTAGACAAACAAAA 1037
Query 3921 GGAAGCGGACATAACCGAAAAAATAGAA 3948
||||| ||||||||| |||||| ||||
Sbjct 1038 GGAAGATGACATAACCCAAAAAACAGAA 1065
Score = 143 bits (77), Expect = 2e-32
Identities = 104/117 (89%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 1832 AGGAGAATGCAGAACCAGTGGAAGCAGTCAAAAACTCAGATGGTACAGAGCAAATCTCAC 1891
||||| ||||||||||||| |||||| |||||| |||||| | | |||||||||||||||
Sbjct 953 AGGAGGATGCAGAACCAGTAGAAGCAATCAAAACCTCAGAAGATGCAGAGCAAATCTCAC 1012
Query 1892 GTGAAGTGACTGTAGACAGAGCAAA-GGAAGAGGACATAGCCCCAAAAACAGAAGAG 1947
|||||||||||||||||| | |||| |||||| |||||| ||| |||||||||||||
Sbjct 1013 GTGAAGTGACTGTAGACAAA-CAAAAGGAAGATGACATAACCCAAAAAACAGAAGAG 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 339524341029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5