BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40460.1 Length=686 Score E Sequences producing significant alignments: (Bits) Value Ahg947705 jgi|Araly1|947705|scaffold_703934.1 544 4e-154 > Ahg947705 jgi|Araly1|947705|scaffold_703934.1 Length=379 Score = 544 bits (294), Expect = 4e-154 Identities = 351/378 (93%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 202 GAGTTAGTTAAAGAGAGATGGGTTTTTCGAAGAAATCTCAATTCGAAGGAGGTTTAGAAT 261 ||| ||||| ||||||||||||| ||||||||||||||||||| || ||||||||||| | Sbjct 4 GAGATAGTTCAAGAGAGATGGGTCTTTCGAAGAAATCTCAATTTGACGGAGGTTTAGATT 63 Query 262 CCGACGGGAAGAAATGGGTTATCGCCGGAATTTCGATTCGGGCTTCGTTGAAACCAGTCA 321 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 64 CTGACGGGAAGAAATGGGTTATCGCCGGAATTTCGGTTCGGGCTTCGTTGAAACCAGTGA 123 Query 322 AGACGAAACTCAGAGCGCCGCCGGAGATAGTGA-CCGAAGTTGAAGAAGATTGCTACAAC 380 ||||||||| || |||||||||||||| || | ||||||||||||||||||||||||| Sbjct 124 AGACGAAACACAAAGCGCCGCCGGAGAAAG-AAGCCGAAGTTGAAGAAGATTGCTACAAT 182 Query 381 GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGTTATTG 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 183 GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGATATTG 242 Query 441 GAATGTCCACCAGCACCGAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACG-TCGT 499 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | || Sbjct 243 GAATGTCCACCGGCACCCAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACGCT-GT 301 Query 500 TAGAGAGTTTTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTCTACGTCGCCGTTAGTG 559 || |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 302 TATAGAGTTCTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTATACGGCGCCGTTAGTG 361 Query 560 AGATTT-GAGtttttttt 576 || ||| ||||||||||| Sbjct 362 AG-TTTAGAGTTTTTTTT 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25199248137 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5