BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40460.1

Length=686
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947705 jgi|Araly1|947705|scaffold_703934.1                        544    4e-154


> Ahg947705 jgi|Araly1|947705|scaffold_703934.1
Length=379

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 351/378 (93%), Gaps = 6/378 (2%)
 Strand=Plus/Plus

Query  202  GAGTTAGTTAAAGAGAGATGGGTTTTTCGAAGAAATCTCAATTCGAAGGAGGTTTAGAAT  261
            ||| ||||| ||||||||||||| ||||||||||||||||||| || ||||||||||| |
Sbjct  4    GAGATAGTTCAAGAGAGATGGGTCTTTCGAAGAAATCTCAATTTGACGGAGGTTTAGATT  63

Query  262  CCGACGGGAAGAAATGGGTTATCGCCGGAATTTCGATTCGGGCTTCGTTGAAACCAGTCA  321
            | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct  64   CTGACGGGAAGAAATGGGTTATCGCCGGAATTTCGGTTCGGGCTTCGTTGAAACCAGTGA  123

Query  322  AGACGAAACTCAGAGCGCCGCCGGAGATAGTGA-CCGAAGTTGAAGAAGATTGCTACAAC  380
            ||||||||| || |||||||||||||| ||  | ||||||||||||||||||||||||| 
Sbjct  124  AGACGAAACACAAAGCGCCGCCGGAGAAAG-AAGCCGAAGTTGAAGAAGATTGCTACAAT  182

Query  381  GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGTTATTG  440
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  183  GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGATATTG  242

Query  441  GAATGTCCACCAGCACCGAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACG-TCGT  499
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct  243  GAATGTCCACCGGCACCCAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACGCT-GT  301

Query  500  TAGAGAGTTTTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTCTACGTCGCCGTTAGTG  559
            || |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  302  TATAGAGTTCTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTATACGGCGCCGTTAGTG  361

Query  560  AGATTT-GAGtttttttt  576
            || ||| |||||||||||
Sbjct  362  AG-TTTAGAGTTTTTTTT  378



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25199248137


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5