BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40470.1
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493940 jgi|Araly1|493940|fgenesh2_kg.7__3373__AT5G40470.1 2254 0.0
> Ahg493940 jgi|Araly1|493940|fgenesh2_kg.7__3373__AT5G40470.1
Length=1699
Score = 2254 bits (1220), Expect = 0.0
Identities = 1444/1549 (93%), Gaps = 27/1549 (2%)
Strand=Plus/Plus
Query 117 ATCCTTCTTTCATCGTCTTTCGATTTCTCCaaaaaaaTGGAAGAAATTTTATTCGATGAG 176
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 ATCCTTCTTTCATCTTCTTTCGATTTCTCCAAAAAAATGGAAGAAATTTTATTCGATGAG 148
Query 177 ATTCTCTGCGAGATATTTACAAGACTGCCATCGtcttcttcttcttcttcttc-ctcatc 235
||||||||||||||||| |||||| |||| ||||||||||||||||| | || | |||
Sbjct 149 ATTCTCTGCGAGATATTCACAAGATTGCCGTCGTCTTCTTCTTCTTC--C-TCAAT-ATC 204
Query 236 atcttcgttaccttctttcgaatcggttcctcttGTCTCAAAACGATGGCTTCGTCTCTA 295
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 205 ATCTTCTTTACCTTCTTTCGAATCGGTTCCTCTTGTCTCAAAGCGATGGCTTCGTCTCTA 264
Query 296 CAGAGCATCAAAGACTTCCATGTCCTTACAATTCAGTCCTCACGACACCTCTGTAATTAC 355
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||
Sbjct 265 CAGAGCATCAAAGACTTCCATGTCTTTAAAACTCAGTCCTCACGACACCTCTGTAATTAC 324
Query 356 CCTTTTGCCCTCTATCCTCAACAACCATCCTTGTCTCTCTTCCCTCTCTATCTATCGCGG 415
|| ||| |||||| ||||||| |||||||||| |||||||||||||||| ||| ||||||
Sbjct 325 CCATTTACCCTCTGTCCTCAATAACCATCCTTCTCTCTCTTCCCTCTCTTTCTCTCGCGG 384
Query 416 CGTAACCA-T---A--GGAA-C-T----ACCCCAAGTCGTTCGGATGAGGAG-CATCTGA 462
| | |||| | | || | | ||||||| ||||||||||| ||| | |||||
Sbjct 385 CTTCACCATTAACACCAAAATCATCACAACCCCAATTCGTTCGGATGTTGAGTC-TCTGA 443
Query 463 AAGCTGAAACCATTTTCAGCGACGAGCTAATCTCAATCATATCTTCTTGCTGCTTCAATC 522
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||
Sbjct 444 AAGCTGAAACCATTTTCAACGAAGAGCTAATCTCAATCATATCTTCTTGCTGCTTTAATC 503
Query 523 TCAGAAACCTCTGTTTCTTGATCAATCCAGTttcttcatcttctttggttcctctctcta 582
|||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 504 TCAGAAGTCTCAGTTTCTTGATCAATCCAGTTTCTTCATCTTCTTTAGTTCCTCTCTCTA 563
Query 583 cttctttatctctcacttctctctctATCGAATTATGGAAACCACAAAACTCAGGTTTCA 642
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 564 CTTCTTTATCTCTCACTTCTCTCTCTATCGAAGTGTGGAAACCACAAAACTCAGGTTTCA 623
Query 643 CTTGGATTGCTCTGTTTTCATCTCTTAAAGAATTATCAATCCATGTTTGCTCAACGAGTT 702
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 624 CTTGGATTGCTCTGTTTTCATCTCTTAAAGAATTATCAATCCATGTTTGTTCAACGAGTT 683
Query 703 CTCCAGCTTTCGATTTCTATCCAAAGTCTAAACCTAACCCGGAAGTTGTAGAGTTAGGTT 762
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 684 CTCCAGCTTTCGATTTCTATCCAAAGTCTAAACCTAACCCGGAAGTTTTAGAATTAGGTT 743
Query 763 TGGAATCGGTTTCTTTATTTGGAATCCAACCTGATGATAATGATGTTACTTGGTTATGGA 822
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 744 TGGAATCGATTTCTTTATTTGGAATCGAACCTGATGATAATGATGTTACTTGGTTATGGA 803
Query 823 AAAGTTGCAGAAAGTTAAAGAAACTGAGTCTGAGATCTTGTGGAAGTATTGGAG-AA--G 879
|| ||||||||||| ||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 804 AATGTTGCAGAAAGGTAAAGAAACTGAGTCTGAGATCTTGTGGAAGCATTGGAGAAATCG 863
Query 880 A---AATCGGTTTGTGTTTGAAGAATCTTGAAGAGATTGAGTTAAGAACATGTAGGAGTA 936
| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 864 AGTTTTTCGGTTTGTGTTTGGAGAATCTTGAAGAGATTGAGTTGAGAACATGTAGGAGTA 923
Query 937 TTGTTGATGTGGTTCTGCTTAAAGTATCAGAGATTTGTGAATCTTTAAAGTCTCTGTTGA 996
||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||
Sbjct 924 TTGTTGATGTGGTTCTGCTGAAAGTTTCAGAGATCTGTGAATCTTTGAAGTCTCTGTTGA 983
Query 997 TTCATGATGGTGGAAGCAAAGATGGGTTGGTTCAG-TTTATGAGCAATGCTAGATGTTAT 1055
| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct 984 TACATGATGGTGGAAGCAAAGATGGGTTGGTT-TGTTTTATGAACAATGCTAGATGTTAT 1042
Query 1056 GATACTTTGGAAAGACTCGATTTACGTCTACCGATGGATTTGACCGATGATCATTTAGTC 1115
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1043 GATACTTTGGAAAGACTCGATTTGCGTCTACCGATGGATTTGACCGATGATCATCTAGTC 1102
Query 1116 TCTCTCGCTGCGAATTTCAAGTGTTTGTCGACTCTTAGGCTTACAAGCTGTATCTTTGTG 1175
|||||||||||||||||||||||||| || | | |||| |||||||||||||||||||||
Sbjct 1103 TCTCTCGCTGCGAATTTCAAGTGTTTATCAAGTATTAGCCTTACAAGCTGTATCTTTGTG 1162
Query 1176 ACTGGTTTTAGTCTAAAGGCATTGGCTTTAAGCTTTAGTTCGAGTCTTGAAGAGCTTTCT 1235
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1163 ACTGGTTTTAGTCTAAAGGCATTAGCTTTAAGCTTTAGTTCGAGTCTTGAAGAGCTTTCT 1222
Query 1236 TTGCTTAGCTGCAACGCGATTGAACGAGAGCGTGGTTTGTTGGCGACAATAGGACAGCAT 1295
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1223 TTGCTTAGCTGCAACGCGATTGAACGAGAGCGTGGTTTGTTGGCAACAATAGGACAGCAT 1282
Query 1296 TTGGGGAGGTTAAGGAAGCTAGATTTGACTCGGAACGAGTGGTTATTCGATAAAGAGGTT 1355
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1283 TTGGGGAGATTAAGGAAGCTAGATTTGGCTCGGAACGAGTGGTTATTCGATAAAGAAGTC 1342
Query 1356 GTTTCGATGTTAGCTTCTTGCAATGGTTTGGTTGAGGTTGTTTTGAGAGATTGTAAGCAT 1415
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1343 GTTTCGATGTTAGCTTCCTGCAATGGTTTGGTTGAGGTTGTTTTGAGAGAGTGTAAGCAT 1402
Query 1416 TTGACAGGTGCAGTGTTGGTTGCTTTGAACAAAAACTGTGTGAAGTTGAAGACTTTAGAC 1475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1403 TTGACAGGTGCAGTGTTGGTTGCTTTGAACAAAAACTGTGTGAAGTTGAAGACTTTGGAC 1462
Query 1476 ATTTTAGGTTGTCGGTTGATTGAGCCTGATGATGTGGAGGGGTTTGTGATGAAGACACAA 1535
|||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1463 ATTTTAAGTTGTCGATTGATTGAGCCTGATGATGTGGAGGGTTTTGTGATGAAGACACAA 1522
Query 1536 TGTTTGAAGAAGCTTGTGGTTGAAGAGAATCAGATCACAGAAGCTATATTGAAATTGGCT 1595
||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 1523 TGTTTAAAGAAGCTTGTGGTTGAAGAGAACCAGATTACAGAAGCTATAGTGAAATTGGCT 1582
Query 1596 TCGAGTAAGTTTATTGAAACTGTTGTGTTTGATTCTCTTGTTTGGTAAT 1644
||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1583 TCGAGTAAGTTAATTGAAACTGTTGTGTTTCCTTCTCTTGTTTGGTAAT 1631
Score = 115 bits (62), Expect = 1e-24
Identities = 78/85 (92%), Gaps = 4/85 (5%)
Strand=Plus/Plus
Query 1 CTTATCAATTCTTTTTTGGGTCCGTCTCTTGCGTGACTCAAGAATCAAAC-A-AC-ACAA 57
||||||||||||||||| | |||||||||||||||||||||||||||| | || ||||
Sbjct 1 CTTATCAATTCTTTTTT-CTTGCGTCTCTTGCGTGACTCAAGAATCAAACAACACAACAA 59
Query 58 GTGTCAAAGCCACCAAGAACACAAA 82
|||||||||||||||||||||||||
Sbjct 60 GTGTCAAAGCCACCAAGAACACAAA 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70962126435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5