BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40500.1
Length=697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355933 jgi|Araly1|355933|fgenesh1_pg.C_scaffold_7003106 490 6e-138
> Ahg355933 jgi|Araly1|355933|fgenesh1_pg.C_scaffold_7003106
Length=348
Score = 490 bits (265), Expect = 6e-138
Identities = 295/309 (95%), Gaps = 3/309 (1%)
Strand=Plus/Plus
Query 217 GTAGGATGGAGGTTGCAGATAAATTGCAGAAAGAAAGAGAAAGGAAGAGATCAGAGTCAT 276
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 40 GTAGGAGGGAGGTTGGAGATAAATTGCAGAAAGAAAGAGAAAGGAAGAGATCAGAGTAAT 99
Query 277 TA---TCCTTACAAAGTCATTGAAATCACTCCTCCTCCTAAATCTCTCGGCATTCGTTGC 333
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 TATCCTCCTTACAAAGTTATTGAAATCACTCCTCCTCCTAAATCTCTCGGCATTCGTTGC 159
Query 334 CTTCCTCATAACCTTCAATGTGGAGAGAACGTGATGATCGAAGGGCAAACGTACACAATC 393
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 160 CTTCCTCATAACCTTCAATGTGGAGAGAATGTTATGATCGAAGGGCAAACGTACACAATC 219
Query 394 TCTGCTGTGACTCACCGGTATCAGCTCCGGAAAGGCAAATACGAGCCGAGTGAGAGGCGG 453
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TCCGCGGTGACTCACCGGTATCAGCTCCGGAAAGGCAAATACGAGCCGAGTGAGAGGCGG 279
Query 454 CTCGATGTTCTCTCTGCTGCTAGATACGTTTTAAACCTTTACTTCGACAATTTGCTCCAA 513
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 280 CTCGATGTTCTCTCTGCCGCTAGATACGTTTTAAACCTTTACTTCGACAATTTACTCCAA 339
Query 514 AACTCCTGA 522
||||| |||
Sbjct 340 AACTCTTGA 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25618600224
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5