BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40510.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493935 jgi|Araly1|493935|fgenesh2_kg.7__3368__AT5G40510.1 2010 0.0
> Ahg493935 jgi|Araly1|493935|fgenesh2_kg.7__3368__AT5G40510.1
Length=1354
Score = 2010 bits (1088), Expect = 0.0
Identities = 1275/1364 (93%), Gaps = 17/1364 (1%)
Strand=Plus/Plus
Query 20 TTTTGATTACTTCCATTTCCTCAAAAGTCAAAGCTCTCTTTCTTCTCTCTCGAGATTTGC 79
|||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||
Sbjct 1 TTTTGATTACTTCCATTTCCTCAAAAGTCAAAACTCTC--T-TTCTCTCTC--GATTTGC 55
Query 80 TAACTTGTCAATGGCGGATGTTGAGAATCTGAACTCTGTTCCGGCGTCGGAAGACACAGA 139
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 56 TAACTTGTCAATGGCGGAAGTCGAGAATCTGAACTCTGTTCCGGCGTCGGAAGACACCGA 115
Query 140 GTATGGATTTAAACGGCCGGAGATGTACAGCACAAACATAGCCAATTCCATAACTTCCTA 199
|||||| |||||||||||||||||||||||||||||||| |||||||| ||||| || ||
Sbjct 116 GTATGGCTTTAAACGGCCGGAGATGTACAGCACAAACATCGCCAATTCTATAACATCTTA 175
Query 200 CGCTCGTCATGTTTTTGTTCTTTACAAAACTCCTGAAGCTTGGCTCTCTCACGTCGAAGA 259
| ||||||||||||||||||||| || |||||||||||||||||||| || || |||||
Sbjct 176 TGATCGTCATGTTTTTGTTCTTTATAAGACTCCTGAAGCTTGGCTCTCACATGTTGAAGA 235
Query 260 AGAAGGTTTACCTCAACGTTTCGCTACGTTGCTTAAAGATCGCAAATCTGATCTTCTTGT 319
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 AGAAGGTTTACCTCAACGTTTCGCTACGTTGCTTAAAGATCGAAAATCTGATCTTCTTGT 295
Query 320 TCAGACGAAGCTCAATGTATGTGAAGGTGGTGGATCTGACGGTGATGTTTTGATTTTTCC 379
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 296 TCAGACGAAGCTTAATGTATGTGAAGGTGGTGGATCTGATGGTGATGTGTTGATCTTTCC 355
Query 380 CGATATGATCAGATACAAGGGGGTTAAGGATACGGATGTGGAA-GGTTTCTTTGAAGATG 438
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 356 GGATATGATCAGATACAAGGGGGTTAAGGATACGGATGTGGAAGGGTTT-TTTGAAGATG 414
Query 439 TTCTTGTGAATGGGAAGCCATGGAGTTCTGGGATACAAGAAGAGATATCTGGAACATTTG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TTCTTGTGAATGGGAAGCCATGGAGTTCTGGGATACAAGAAGAGATATCTGGAACATTTG 474
Query 499 TATTTGTGTGTACTCATGCTAGTCGTGACAAGAGATGTGGTGTTTGTGGACCAGTGATCT 558
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 475 TATTTGTGTGTACTCATGCTAGTCGAGACAAGAGATGTGGTGTTTGTGGACCAGTCATCT 534
Query 559 TGGAGAGGTTTAAGCAAGAGATTGGTTCTCGAGGACTGTCGGACCAGATTACACTGAAAC 618
| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 535 TAGAGAGGTTCAAGCAGGAGATAGGTTCTCGTGGACTCTCGGACCAGATTACGCTGAAAC 594
Query 619 GTTGTTCTCATGTTGGACAGCACAAGTATGCTGGTAATTTGATCATCTTCTGTCCTGATT 678
| |||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 595 GATGTTCTCACGTTGGACAGCACAAGTATGCTGGTAATTTGATTATCTTCAGTCCTGATT 654
Query 679 CAGCTGGAAAGATTACTGGCAATTGGTATGGCTATGTAACACCTGATGATGTACCTGAAT 738
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 655 CAGCTGGAAAGATTACTGGCAATTGGTATGGCTATGTAACTCCTGATGATGTACCTGAAT 714
Query 739 TGCTTGATCAACATATTGCAAAAGGAGAAATCATACAAAGGATTTGGAGGGGGCAAATGG 798
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 715 TGCTTGACCAACATATTGCAAAAGGAGAAATCATACAAAGGATTTGGAGGGGCCAGATGG 774
Query 799 GTCTACCTGGAGGTGAAGCTGAGAAAGTGCATGAACAGAAAGTTATACCAAATGGTCACG 858
| |||||||||||||||||||||||| |||||||||||||||| |||||||| ||| |||
Sbjct 775 GACTACCTGGAGGTGAAGCTGAGAAACTGCATGAACAGAAAGTGATACCAAACGGTAACG 834
Query 859 GTGTAGTGAAAGAGGAGAGCAAAGGATTCACAGGAGGATGTTGTCAGGGATCAAACGGTG 918
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 835 ATGTAGTGAAAGAGGAGAGCAAAGGGTTCACAGGAGGATGTTGTCAGGGATCGAACGGAG 894
Query 919 TTTCGTGTTGCCAAGACGAAACTCCAAAGCCAGAGCCAATCAAGAAAGAAGTAAAAAAGT 978
|||||||||||||||||||||| || |||||||||||||| |||||||||| |||||| |
Sbjct 895 TTTCGTGTTGCCAAGACGAAACCCCCAAGCCAGAGCCAATTAAGAAAGAAGGAAAAAAAT 954
Query 979 GTACCATATGGTTCCAGCCTCTTGACAAAGAAGAGCTTTACATTGGAGCTGCTGTGGTTG 1038
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||
Sbjct 955 GTACCATATGGTTCCAGCCTCTTGACAAAGACGAGTTTTACATTGGAGCCGCTGTGGTTG 1014
Query 1039 GAGCCATTGCAACTATAGCCATGGCTTTCACCTTTTTCAAGAGGTCA-GGTTAAGAACCT 1097
|||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||
Sbjct 1015 GAGCCATTGCAACTATAGCCGTGGCTTGCACCTTTTTCAAGAGGTCACGGT-AAGAACCT 1073
Query 1098 AACCTTACTTACTTACCAATAGAAGTTT-TTCCTTGGAGATTGCCATGAGACAATAGAAA 1156
|||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 1074 AACCTTACTTACTTACCAATAGAAGTTTCTTC-TTGGAGATTGCCACGAGACAATAGAAA 1132
Query 1157 AAGAAAACCTCCATTGATTCGACCACAAAACAGAAGCGAAGAATTATGTTTTTGTCTTTG 1216
| ||| || ||||||||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 1133 ATGAATACATCCATTGATTCCACCACAAAACAGAACCGAAGAATTATGTTTTTGTCTGTG 1192
Query 1217 ATTTTACCATTAAAGAAA----CATATAAACTTTTTGGTTTCTGTGAGCGtttttttGCC 1272
||| ||| |||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1193 ATTCTACAATTAAAGAAAGAAACATATAAACTCTCTGGTTTCTGTGAGCGTTTTTTTGCC 1252
Query 1273 TTGCTATCTTCTCACATTATGTGTTTTTGTTGTAATGGCCATAACTTCTGTGATTGGTCT 1332
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1253 TTGCTATCTTCTCACATT--GTGTTTTTGTTGTAATGGCCATAACTTTTGTGATTGGCCT 1310
Query 1333 AAACTCTCTCACTTTGGTGCATTAACAAAACTTTGATTTGGTTT 1376
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AAGCTCTCTCACTTTGGTGCATTAACAAAACTTTGATTTGGTTT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5