BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40520.2
Length=2383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493934 jgi|Araly1|493934|fgenesh2_kg.7__3367__AT5G40520.2 3432 0.0
> Ahg493934 jgi|Araly1|493934|fgenesh2_kg.7__3367__AT5G40520.2
Length=2325
Score = 3432 bits (1858), Expect = 0.0
Identities = 2205/2367 (93%), Gaps = 46/2367 (2%)
Strand=Plus/Plus
Query 16 AGTCGATTCCAATTCCTTGAAGAAGATGGCAATGGATAATAATTCAGTTTTCTTCAAGAC 75
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AGTCGATTCCAATTCCTTGAAGAAGATGGCAATGGATGATAATTCAGTTTTCTTCAAGAC 60
Query 76 TGATTTTGGTTCGATACTTTCACAGATTAAGGATCAAGATGAGCAAATTCGTCTCAAAAG 135
||||| || ||| ||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 61 TGATTGTGCTTCTATACTTTCACAGATTAAGGATCATGATAAGCAGATTCGTCTCAAAAG 120
Query 136 AAGGTGGCTTTTGGGTTGTGATATGTCTGACTCCACCAAGGACCATACTCCGGGAAAGAC 195
||||||||| |||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 121 AAGGTGGCTGTTGGGTTGTGATATGTCTGAAT---CCAAGGACAATACTCCGGGAAAGAC 177
Query 196 TGAATTCGTCCCTGAATCTTTGCTTAGGGAAGATGATATATTCTACGAGACGATAAAGTC 255
|||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 178 TGAATTCGTCCCTGAATCTTTGCTCAGGGAAGATGATGTATTCTACGAGACCATAAAGTC 237
Query 256 GCGTGTAGAAGAGGCATTTGGATTTTGCAAGAATCAACAAGTAGTATGCAATGATGTTCA 315
||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 238 GCGTGTACAAGAGGCATTTGGATTTTGCAAGAATGAACAAGTACTATGTAATGATGTTCA 297
Query 316 ACAGAAGGAGTTAAAGTTCTGCGATCTTGAACTTGTTAGAAAGCTTGATTCTTTGACGAA 375
||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 298 ACAAAAGGAGTTAAAGTTCTGCAATCTCGAACTTGTTAGAAAGCTTGATTCTTTGACGAA 357
Query 376 TAAAGGTCTTTATCTTATTGCAATGATACTCACAGGAGGCTCTACTTCCTTTGACAAGAC 435
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 358 TAAAGGTCTTTATCTTATTGCAATGATACTCACAGGAGGCTCTACTTCGTTTGACAAGAC 417
Query 436 TCGATTGAAAATGAAAGAGATTATCAGAGATTCGGTCAGGAGAGACTTCGGAAAGAATAA 495
||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 418 TCGATGGAAAATGAAAGAGATTATCAGAGATTCTGTCAGTAGAGACTTTGGAAAGAATAA 477
Query 496 AGAAGGTATTGGTAAAGAAGAGATTATTAATCAGCTCCATCAAGTTCTTAGTGATCCCGC 555
||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 478 AGACGGTATTGGTAAAGAAGACATTATTAATCAGCTGCATCAAGTTCTTAGTGATCCCGC 537
Query 556 AAATTTCCGGGAAGATTGCAGGATGAATTTGGGGAGAACACCTACTCTTCATTCCCATCG 615
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 538 AAATTTCCGGGAAGATTGCAGGATGAATTTGGGGAGAACACCTACTCTGCATTCCCATCG 597
Query 616 TGATGCTGCAATGAAGGTACTTAATGAGCTAGATAGTTTGTCTACTCAGACCCTACGTGC 675
|||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 598 TGATGCTGCATTGAAGGTACTTAATGAGCTAGATGGTTTGTCGACTCAGACCCTACGTGC 657
Query 676 AATGAAAAGGAAACTTAAAGGTTCAAGAATGATACCTCAATTGAAAAATAGTAGACGTGG 735
||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 658 GATGAAAAGGAAACTTAAAGGTTCAAGAATGATACCTCAACTGAAAACCAGTAGATTTGG 717
Query 736 TCAGCGTCGAAGTGATCTGATTAACCAAGTGAGGCAAGCTAGCGAGAAGATGCTCTCAGA 795
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCAGAGTCGAAGTGATCTGATTAACCAAGTGAGGCAAGCTAGCGAGAAGATGCTCTCAGA 777
Query 796 ACTTTCTGCAGGGGATAAACTGCAGGAGCAATTGGCTAAAGCGTTGTCAGTAGTAGATTT 855
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ACTTTCTGCAGGGGGTAAACTGCAGGAGCAATTGGCTAAAGCGTTGTCAGTAGTAGATTT 837
Query 856 ATCACTTAAGCTAAGTCCTGGCTACAAAACTGCTGCTGCCACAGAtttttttCGGTTCTC 915
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 838 ATCACTTAAGCTAAGTCCTGGCTACAAAACTGCTGCTGCCACAGAATTTTTTCGGTTCTC 897
Query 916 ACCAGAAACAAAGAACCTGCAGAACGAGATAGTGAAGGCAGTATGGTTACTCCGTAAGGT 975
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCCAGAAACAAAGAACTTGCAGAACGAGATAGTGAAGGCAGTATGGTTACTCCGTAAGGT 957
Query 976 TAGGTTTCGTGAGCTGAAAAGATTGCATCTTTGTTTAGACCCAGAAGCTGAAGTTTCTAA 1035
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 958 CAGGTTTCGTGAGCTGAAAAGACTGCATCTTTGTTTAGACCCAGAAGCTGAAGTGTCTAA 1017
Query 1036 TGACAGCTTAAGATCAGCGGTCAGAAAAACGTTGATTGAATATCTGTTTGAGTGCAGTGA 1095
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 TGACAGCTTAAGATCAGCAGTCAGAAAAATGTTGATTGAATATCTGTTTGAGTGCAGTGA 1077
Query 1096 TCTGGACACCATTCCAAAGTCTTTAATGGAAGCTCTTTCATTGGTCAACAGCAGGACGGG 1155
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1078 TATGGACACCATTCCAAAGTCTTTAATGGAAGCTCTTTCATTGGTCAACAGGAGGACGCG 1137
Query 1156 GAATGTAGAGCATAAGGTATGTCCAAGGGAAGCAATTGAGGAGGAGACAGAGTGTATATT 1215
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1138 TAATGTAGAGCATAAGGTATGTCCAAGGGAAGCAATTGATGAAGAGACAGAGTGTATATT 1197
Query 1216 AAATGTGAGTGCTCAAGTGAAGCAAATATTTTGCCAATGTATTCCAAATTATGAACTCGA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAATGTGAGTGCTCAAGTGAAGCAAATATTTTGCCAATGTATTCCAAATTATGAACTCGA 1257
Query 1276 TCAGGACTTCGGTGATGCTTATATGGAGGATCTAGAAGACAGtgatgataatgatgatga 1335
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1258 TCAGGACTTCGGTGATGCTTATATGGAGGAGCTAGAAGACAGTGATGATAATGATGATGA 1317
Query 1336 tgatgatgatgatgatgatgatgatgaGAATTGTAATTTATTTGATAACGAGAAATTAGG 1395
||||| || | | ||| || | ||| || | ||| ||||| |||||||| |
Sbjct 1318 TGATGGTG--G--G--GAT--TG-T-AGA-TT--A-TTT----GATAATGAGAAATTTGT 1359
Query 1396 TAATAAAGAAGAGAGTAGATGCCGAAACATAAAGCTTGAAGTCAAAGACACTCAAGACGA 1455
|||| ||||||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 1360 TAAT---GAAGAGAGTAGATGCCGAAACATAAAGCTTGAAGTGAAAAACTCTCAAGACGA 1416
Query 1456 TGCAATGGAGTCCTCTGATTCGGATCATGAAGAAAGTGGTGCAGAATGCTTGGTTTTGGA 1515
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1417 TGCAATGGAGTCCTCTGATTCGGATCATGAAGAAAGTGGTGCTGAATGCTTGATTTTGGA 1476
Query 1516 CCCGACTGATTCTACACATGA-AACAAACCAGCATGATTTCAGCTCTTCTGTCAATAGGG 1574
|||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 1477 CCCGACTGATTCTACACAC-ACAACCAACCAGCATGATTTCAGCTCTTCTGTCAATAGGG 1535
Query 1575 TGGTTGTAAGAGACCTGCCAGAGAGTATTACAAGAGT-CTATCCTAGATCTCTCTATGTC 1633
| ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||
Sbjct 1536 TAGTTGTAAGAGACCTGCCAGAGAGTATTACAAGAGTTC-ATCCTAGGCCTCTCTATGTC 1594
Query 1634 ACTCCCACGTCCAATAAATCAATAGTTATCAGTGATAGACATGACATAGCTATGAGCAAA 1693
|||||||||||||||||||||| |||||||||||||||||||||||| | || |||||||
Sbjct 1595 ACTCCCACGTCCAATAAATCAACAGTTATCAGTGATAGACATGACATTGGTACGAGCAAA 1654
Query 1694 ACCCGAGTCAAGGTTGAGAGGGATATTGAGATGGAAGTAGATAATCAGTTTAGCTCTCGG 1753
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1655 ACCCGGGTCAAGGTTGAGAGGGATATTGAGATGGAAGTAGATAACCAGTTTAGCTCACGG 1714
Query 1754 TCATTGTTTTCTGTTGAAAACATAAAGTCTGATGATCATGGTGAGCAGAAGCCACGAAGA 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1715 TCATTGTTTTCTGTTGAAAACATAAAGTCTGATGATCATGGTGAGCAGAAGCCACAAAGA 1774
Query 1814 AGAAATAAAAACCAGTACCTAGCAATCCAAGAAATTTCTGATGAGACAAGCTTGGTTGCA 1873
||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1775 AGACATAAAAACCAGTACCTCGCAGTCCAAGAAATTTCTGATGAGACAAGCTTGGTTGCA 1834
Query 1874 CATAACCTAATCGGCCGCTTGCTAGAGAAATTTGCAGACCGTCAACGTCTAAACTTAGAA 1933
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1835 CATAAGCTAATCGGCCGCTTGCTAGAGAAATTTGCAGACCGTCAAGGTCTAAACTTAGAA 1894
Query 1934 ACGGATGAACGTTCATATCTTGGAGGTGAATCCAGGCTTCAAGAAAAAGTAGAAGTGAGT 1993
|||||||||||||||||| || |||| |||||||||||||||||| | |||||||||| |
Sbjct 1895 ACGGATGAACGTTCATATATTAGAGGCGAATCCAGGCTTCAAGAAGATGTAGAAGTGAAT 1954
Query 1994 GaaaaaaaGCAAGCTTCATCGCAGGCGAAGTCAGATGAGGCGATCATTCTTTCAGTTGTC 2053
| | |||||||||||||||| || ||||||||||||||| |||||||| |||| ||| ||
Sbjct 1955 GGAGAAAAGCAAGCTTCATCTCAAGCGAAGTCAGATGAGTCGATCATTGTTTCTGTTATC 2014
Query 2054 AAAGAGCAAATAACGTCCCTAGAAGAGAGTGTCTTGATGAGATTAAAAGAGTTGATGGAA 2113
||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2015 AAAGAGCAAATGCCATCCCTTGAAGAGAGTGTCTTGATGAGATTAAAAGAGTTGATGGAA 2074
Query 2114 GTGAGCTAGCATCAGCAAAGTTATAACCTTTCCTGCCTAAGTGAAGTAGCAATGGAATCA 2173
|||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
Sbjct 2075 GTGAGCTAGCATCAGCAAAGTTATAATCTTTCCTACCAAAGTGAAGTAGCAATGGAATGA 2134
Query 2174 AGAGAGAATCGGCAAAGGATATTGAGATGAACACAACAAGGAATACGATTTTGCATCACA 2233
|||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2135 AGAGAGAAACAACAAAGGATATTGAGATGAACACAACAAGGGATACGATTTTGCATTACA 2194
Query 2234 TTGTATTCATTTTTACTTGGTTCTCAATCCCCCTTTAGGGAAGAACTTAAGAGTG-TACT 2292
||||||| ||||||||||| ||||||| | |||||||||| |||| | ||
Sbjct 2195 TTGTATTGATTTTTACTTGATTCTCAA----------G--AAGAACTTAA-AGTGAT-CT 2240
Query 2293 CAtttttttCTTTATATGATAAGATGATCTTTGCCATACATTGATCGTCAGCATTA-TTG 2351
|||||||||||||||||| ||| ||||||||||| |||||||||||||||||| | |||
Sbjct 2241 TATTTTTTTCTTTATATGA-AAGGTGATCTTTGCCGTACATTGATCGTCAGCAT-AGTTG 2298
Query 2352 TCCCTTATCGAACGAAGGTTGTTGGTG 2378
||||| ||| |||||||||||||||||
Sbjct 2299 TCCCTGATCAAACGAAGGTTGTTGGTG 2325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89778707465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5