BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40530.2
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330455 jgi|Araly1|330455|fgenesh1_pm.C_scaffold_7002682 1230 0.0
> Ahg330455 jgi|Araly1|330455|fgenesh1_pm.C_scaffold_7002682
Length=888
Score = 1230 bits (666), Expect = 0.0
Identities = 720/747 (96%), Gaps = 0/747 (0%)
Strand=Plus/Plus
Query 55 ATGACGACTGAGGAAAATAAAACAAGCAGAAATAGGAAGAGGAAGAGACAGAGAAACCCT 114
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGACTGAGGAAAGTACAACAAGCAGAAATAGGAAGAGGAAGAGACAGAGAAACCCT 60
Query 115 AAACCTTCTAAAGAAGAACCTATCGAGACGACACCGAAGAATCAAAACGAGAAAAAGAAT 174
|||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||| |
Sbjct 61 AAACCTTCTAAAGAAGAACCTATCGACACGACACCGAAGAACCAAAACAACAAAAAGAGT 120
Query 175 CAAAGAGATACCAAAAACCAACAACATGGAGGTTCTTCAGCTCCATCGAAACGACCTAAA 234
|| |||||||||||| || ||||||||||||||||||||| ||||||||||||| |||
Sbjct 121 CAGAGAGATACCAAAGTTCAGCAACATGGAGGTTCTTCAGCTTCATCGAAACGACCAAAA 180
Query 235 CCTTCCAATTTCCTCGATGCGCTTAGAGAGAGATTATCTGGTGGGCAATTTAGGATGCTC 294
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CCTTCCAATTTCCTCGATGCGCTTCGAGAGAGATTATCTGGTGGGCAATTTAGGATGCTC 240
Query 295 AATGAGAAACTCTACACTTGCTCTGGAAAAGAAGCTTTAGACTACTTTAAAGAAGATCCA 354
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AATGAGAAACTCTACACTTGCTCTGGAAAAGAAGCATTAGACTACTTTAAAGAAGATCCA 300
Query 355 CAAATGTTTGATATGTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTT 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAATGTTTGATATGTATCATACAGGGTATCAACAACAAATGTCAAATTGGCCTGAGCTT 360
Query 415 CCTGTTAACTCCATTATTAATTGGCTATTGTCTAATAGCTCTTCTTTAGTTGTGGCTGAT 474
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CCTGTTAACTCCATTATTAATTGGCTATTGTCTAAGAGCTCTTCTTTAGTTGTGGCTGAT 420
Query 475 TTTGGCTGTGGTGATGCAAGGATTGCTAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTGGCTGTGGTGATGCAAGGATTGCTAAAAGTGTGAAGAACAAAGTTTTCTCCTTTGAT 480
Query 535 CTTGTCTCAAAGAACCCCTCTGTTATTGCCTGCGATATGTCAAATACTTCACTTGAGTCT 594
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 CTTGTCTCAAAGAACCCCTCTGTTATTGCCTGTGATATGTCAAATACTTCACTTGAGTCT 540
Query 595 TCATCAGTGGATGTTGCAGTTTTCTGTCTTTCATTAATGGGAACAAACTATTCTAGTTAT 654
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 541 TCATCGGTGGATGTTGCTGTTTTCTGTCTTTCGTTAATGGGAACAAACTATTCTAGTTAC 600
Query 655 ATCAAAGAAGCACATCGAGTTCTTCGTCCAAGTGGTATGCTTCTTATAGCGGAAGTAAAG 714
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 ATCAAAGAGGCACATCGAGTTCTTCGTCCAAGTGGTATGCTTCTTATAGCGGAGGTAAAG 660
Query 715 AGCAGGTTTGATCCAAACAATGGAGGAGCAGACCCAAAAGACTTTGTGAAAGCCGTTTGT 774
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 661 AGCAGGTTTGATCCAAACAATGGAGGAGCAGACCCTAAAGACTTTGTGAAAGCAGTTTGT 720
Query 775 GATCTTGGATTTACTTCGGTTTTAAAG 801
|||||||||||||||||||||||||||
Sbjct 721 GATCTTGGATTTACTTCGGTTTTAAAG 747
Score = 110 bits (59), Expect = 3e-23
Identities = 69/74 (93%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1015 AGGAGCAGATGAATTCAAATCAGAAGATAATAAAGTGGCCTGAGTTAAAAGCTTGTTTAT 1074
|||||||| || ||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 815 AGGAGCAGGTGGATTCAGATCAGAAGATAATAAAGTGGCCTGAGTTGAAAGCATGTTTAT 874
Query 1075 ACAAACGTCGATGA 1088
||||||||||||||
Sbjct 875 ACAAACGTCGATGA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5