BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40540.1
Length=1525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1 924 0.0
Ahg947694 jgi|Araly1|947694|scaffold_703923.1 857 0.0
> Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1
Length=1632
Score = 924 bits (500), Expect = 0.0
Identities = 837/1000 (84%), Gaps = 21/1000 (2%)
Strand=Plus/Plus
Query 331 AAATGGGATCTGTTACTGGGTTTTACTCAAATGAAG-TGTTTGAATTAGATCCTAAATGG 389
|||||||||||| | |||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 482 AAATGGGATCTGCAAGTGGGTTTTACTCAAATGAAGAT-TTTGAATTGGATCCTAAATGG 540
Query 390 GTTGTTGATCCTCAACATCTCTTTGTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAA 449
|||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 541 CTTGTTGATCCTCGTCATCTCTTTGTTGGTCCTAAGATCGGTGAAGGTGCTCATGCTAAA 600
Query 450 ATCTATGAAGGAAAGTATAAG-AACAAAACAGTTGCTATTAAGATTGTTAAAAGAGGAGA 508
| ||||| ||||||||| || ||| ||||||| || ||||||||| |||||||||||||
Sbjct 601 GTTTATGAGGGAAAGTAT-AGAAACCAAACAGTGGCGATTAAGATTATTAAAAGAGGAGA 659
Query 509 ATCTCCC-GAAGAGATTGCGAAAAGAGAGAGCAGATTTGCAAGAGAGGTCT-CTATGTTG 566
||| ||| ||||||||||| ||| |||| | | | ||||| |||||| | | ||||| ||
Sbjct 660 ATC-CCCTGAAGAGATTGCTAAACGAGATAACCGGTTTGCGAGAGAGAT-TGCTATGCTG 717
Query 567 TCTAGAGTTCAACACAAAAATTTGGTCAAGTTCATTGGAGCTTGCAAAGAACCAATCATG 626
|||| ||| || ||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 718 TCTAAAGTCCAGCACAAGAATTTGGTCAAGTTCATTGGAGCGTGCAAAGAACCCATGATG 777
Query 627 GTTATAGTCACCGAGCTTTTACTCGGTGGTACATTGCGTAAATACCTTGTTAGCTTGCGT 686
|||||||| ||||||||| |||| || ||||||||||| ||||| || || ||||| ||
Sbjct 778 GTTATAGTTACCGAGCTTCTACTAGGCGGTACATTGCGAAAATATCTAGTGAGCTTACGG 837
Query 687 CCAGGGAGTTTGGACATACGTGTAGCTGTTGGATATGCCCTTGACATTGCTCGGGCGATG 746
||| | |||| ||||| ||| | |||||||||| ||| |||||||||||||| || |||
Sbjct 838 CCAAAGCGTTTAGACATTCGTTTGGCTGTTGGATTTGCTCTTGACATTGCTCGTGCAATG 897
Query 747 GAATGCTTACACTCTCATGGAGTCATCCATCGCGATCTCAAACCAGAGAGCTTGATCTTA 806
||||| ||||| || |||||| |||| || |||||||| |||||||||| |||||||||
Sbjct 898 GAATGTTTACATTCCCATGGAATCATTCACCGCGATCTTAAACCAGAGAATTTGATCTTA 957
Query 807 ACTGCGGATTACAAGACTGTTAAACTAGCAGATTTTGGTTTAGCTAGAGAAGAATCATTA 866
| || ||| | ||||| || ||||| || ||||| ||||||||||||||||||||||||
Sbjct 958 TCAGCAGATCATAAGACAGTGAAACTTGCTGATTTCGGTTTAGCTAGAGAAGAATCATTA 1017
Query 867 ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCC-GAGCTTTACAG 925
|||||||||||||||||||| ||||||||||| || |||||||| ||| |||||||||||
Sbjct 1018 ACCGAGATGATGACCGCAGAGACTGGTACATACCGATGGATGGC-CCCTGAGCTTTACAG 1076
Query 926 TACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAG 985
|||||| || || ||||| || ||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 1077 TACGGTTACATTAAGGCAAGGAGAGAAGAAACATTATAATCATAAAGTAGATGCTTACAG 1136
Query 986 CTTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAA 1045
||||||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| ||
Sbjct 1137 CTTCGCCATTGTCTTGTGGGAACTTATTCTCAACAAGTTACCATTTGAAGGCATGTCCAA 1196
Query 1046 TCTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACC 1105
||| ||||| || || ||||| |||||||||||| ||||||| || ||||| ||| ||||
Sbjct 1197 TCTACAAGCAGCCTATGCTGCAGCATTCAAGAACTTGAGGCCGAGTGCAGAAGATCTACC 1256
Query 1106 AA-AGGATTTAGCA-ATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCA 1163
| || |||||| | ||||||||||| || ||||||||||| ||||| ||||| || |||
Sbjct 1257 AGGAG-ATTTAG-AGATGATTGTAACTTCATGCTGGAAAGAAGATCCTAACGAACGGCCA 1314
Query 1164 AACTTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCA--ACTG 1221
|| ||||||||||| || |||||||| || |||| |||| |||| | |||||| ||
Sbjct 1315 AATTTCACAGAGATAATCCAAATGCTCCTCCGTTACCTCACCACTGTTTCATCAGCACCA 1374
Query 1222 -AGCTTGTTCCTCCGGCC-ATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACC 1279
|| || | ||||| || | | ||| |||||||| || ||||||| || || ||||
Sbjct 1375 CAGATTATCCCTCCA-CCGAATCGACGAGTTTTCTCTTCAGAAAACATAGTTTTATCACC 1433
Query 1280 AGAATCGCCGGGAACTTGCTCAT-TGATGACTGTTAGAGA 1318
||||| || ||||| ||||| | ||||| |||| |||||
Sbjct 1434 GGAATCTCCCGGAACATGCTC-TCTGATGTCTGTCAGAGA 1472
> Ahg947694 jgi|Araly1|947694|scaffold_703923.1
Length=563
Score = 857 bits (464), Expect = 0.0
Identities = 518/544 (95%), Gaps = 3/544 (1%)
Strand=Plus/Plus
Query 867 ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT 926
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 ACCGAGATGATGACTGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT 72
Query 927 ACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAGC 986
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 73 ACGGTCACATTGAGGCATGGCGAGAAAAAACACTATAACCATAAGGTTGATGCATACAGC 132
Query 987 TTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAAT 1046
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 133 TTCGCCATCGTCTTGTGGGAGCTTATCCACAACAAGTTACCTTTTGAAGGCATGTCAAAT 192
Query 1047 CTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACCA 1106
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 193 CTCCAAGCCGCTTATGCCGCTGCATTCAAGAACGTGAGGCCGAGCGCAGACGATTTACCG 252
Query 1107 AAGGATTTAGCAATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCAAAC 1166
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 253 AAGGATTTAGCAATGATCGTAACATCTTGCTGGAAAGAGGATCCAAATGATCGACCAAAC 312
Query 1167 TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCAACTGAGCTT 1226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 313 TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCAGCAACTGAGCTT 372
Query 1227 GTTCCTCCGGCCATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACCAGAATCG 1286
||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 373 GTTCCTCCGTCCATTAAACGTGTATTCTCGTCGGAAAACACAGTATTGCCACCAGAATCG 432
Query 1287 CCGGGAACTTGCTCATTGATGACTGTTAGAGACAAAGATCAGATTCCTACCGATGCAAAC 1346
||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 433 CCGGGAACTTGCTCATTGATGGCTGTTAGAGACGGAGATCAGATTCCTACGGATGCAAAC 492
Query 1347 TCGGCGCAGAATGAAGTTAGAGGAAGCTTCTTCTTCTTCT---GCTGCTAATATTTGATT 1403
||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 493 TCGCCGCAGAAAGAAGTTAGAGGAAGCTTCTTCTTCTTCTTCTGCTGCTAATATTTGATT 552
Query 1404 TATT 1407
||||
Sbjct 553 TATT 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57097277255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5