BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40540.1 Length=1525 Score E Sequences producing significant alignments: (Bits) Value Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1 924 0.0 Ahg947694 jgi|Araly1|947694|scaffold_703923.1 857 0.0 > Ahg484546 jgi|Araly1|484546|fgenesh2_kg.5__538__AT3G27560.1 Length=1632 Score = 924 bits (500), Expect = 0.0 Identities = 837/1000 (84%), Gaps = 21/1000 (2%) Strand=Plus/Plus Query 331 AAATGGGATCTGTTACTGGGTTTTACTCAAATGAAG-TGTTTGAATTAGATCCTAAATGG 389 |||||||||||| | |||||||||||||||||||| | |||||||| |||||||||||| Sbjct 482 AAATGGGATCTGCAAGTGGGTTTTACTCAAATGAAGAT-TTTGAATTGGATCCTAAATGG 540 Query 390 GTTGTTGATCCTCAACATCTCTTTGTTGGTCCCAAGATTGGTGAAGGTGCTCATGCCAAA 449 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct 541 CTTGTTGATCCTCGTCATCTCTTTGTTGGTCCTAAGATCGGTGAAGGTGCTCATGCTAAA 600 Query 450 ATCTATGAAGGAAAGTATAAG-AACAAAACAGTTGCTATTAAGATTGTTAAAAGAGGAGA 508 | ||||| ||||||||| || ||| ||||||| || ||||||||| ||||||||||||| Sbjct 601 GTTTATGAGGGAAAGTAT-AGAAACCAAACAGTGGCGATTAAGATTATTAAAAGAGGAGA 659 Query 509 ATCTCCC-GAAGAGATTGCGAAAAGAGAGAGCAGATTTGCAAGAGAGGTCT-CTATGTTG 566 ||| ||| ||||||||||| ||| |||| | | | ||||| |||||| | | ||||| || Sbjct 660 ATC-CCCTGAAGAGATTGCTAAACGAGATAACCGGTTTGCGAGAGAGAT-TGCTATGCTG 717 Query 567 TCTAGAGTTCAACACAAAAATTTGGTCAAGTTCATTGGAGCTTGCAAAGAACCAATCATG 626 |||| ||| || ||||| ||||||||||||||||||||||| ||||||||||| || ||| Sbjct 718 TCTAAAGTCCAGCACAAGAATTTGGTCAAGTTCATTGGAGCGTGCAAAGAACCCATGATG 777 Query 627 GTTATAGTCACCGAGCTTTTACTCGGTGGTACATTGCGTAAATACCTTGTTAGCTTGCGT 686 |||||||| ||||||||| |||| || ||||||||||| ||||| || || ||||| || Sbjct 778 GTTATAGTTACCGAGCTTCTACTAGGCGGTACATTGCGAAAATATCTAGTGAGCTTACGG 837 Query 687 CCAGGGAGTTTGGACATACGTGTAGCTGTTGGATATGCCCTTGACATTGCTCGGGCGATG 746 ||| | |||| ||||| ||| | |||||||||| ||| |||||||||||||| || ||| Sbjct 838 CCAAAGCGTTTAGACATTCGTTTGGCTGTTGGATTTGCTCTTGACATTGCTCGTGCAATG 897 Query 747 GAATGCTTACACTCTCATGGAGTCATCCATCGCGATCTCAAACCAGAGAGCTTGATCTTA 806 ||||| ||||| || |||||| |||| || |||||||| |||||||||| ||||||||| Sbjct 898 GAATGTTTACATTCCCATGGAATCATTCACCGCGATCTTAAACCAGAGAATTTGATCTTA 957 Query 807 ACTGCGGATTACAAGACTGTTAAACTAGCAGATTTTGGTTTAGCTAGAGAAGAATCATTA 866 | || ||| | ||||| || ||||| || ||||| |||||||||||||||||||||||| Sbjct 958 TCAGCAGATCATAAGACAGTGAAACTTGCTGATTTCGGTTTAGCTAGAGAAGAATCATTA 1017 Query 867 ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCC-GAGCTTTACAG 925 |||||||||||||||||||| ||||||||||| || |||||||| ||| ||||||||||| Sbjct 1018 ACCGAGATGATGACCGCAGAGACTGGTACATACCGATGGATGGC-CCCTGAGCTTTACAG 1076 Query 926 TACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAG 985 |||||| || || ||||| || ||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 1077 TACGGTTACATTAAGGCAAGGAGAGAAGAAACATTATAATCATAAAGTAGATGCTTACAG 1136 Query 986 CTTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAA 1045 ||||||||||||||||||||| ||||| | |||||| ||||| |||||||||||||| || Sbjct 1137 CTTCGCCATTGTCTTGTGGGAACTTATTCTCAACAAGTTACCATTTGAAGGCATGTCCAA 1196 Query 1046 TCTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACC 1105 ||| ||||| || || ||||| |||||||||||| ||||||| || ||||| ||| |||| Sbjct 1197 TCTACAAGCAGCCTATGCTGCAGCATTCAAGAACTTGAGGCCGAGTGCAGAAGATCTACC 1256 Query 1106 AA-AGGATTTAGCA-ATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCA 1163 | || |||||| | ||||||||||| || ||||||||||| ||||| ||||| || ||| Sbjct 1257 AGGAG-ATTTAG-AGATGATTGTAACTTCATGCTGGAAAGAAGATCCTAACGAACGGCCA 1314 Query 1164 AACTTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCA--ACTG 1221 || ||||||||||| || |||||||| || |||| |||| |||| | |||||| || Sbjct 1315 AATTTCACAGAGATAATCCAAATGCTCCTCCGTTACCTCACCACTGTTTCATCAGCACCA 1374 Query 1222 -AGCTTGTTCCTCCGGCC-ATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACC 1279 || || | ||||| || | | ||| |||||||| || ||||||| || || |||| Sbjct 1375 CAGATTATCCCTCCA-CCGAATCGACGAGTTTTCTCTTCAGAAAACATAGTTTTATCACC 1433 Query 1280 AGAATCGCCGGGAACTTGCTCAT-TGATGACTGTTAGAGA 1318 ||||| || ||||| ||||| | ||||| |||| ||||| Sbjct 1434 GGAATCTCCCGGAACATGCTC-TCTGATGTCTGTCAGAGA 1472 > Ahg947694 jgi|Araly1|947694|scaffold_703923.1 Length=563 Score = 857 bits (464), Expect = 0.0 Identities = 518/544 (95%), Gaps = 3/544 (1%) Strand=Plus/Plus Query 867 ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT 926 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 13 ACCGAGATGATGACTGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT 72 Query 927 ACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAGC 986 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 73 ACGGTCACATTGAGGCATGGCGAGAAAAAACACTATAACCATAAGGTTGATGCATACAGC 132 Query 987 TTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAAT 1046 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 133 TTCGCCATCGTCTTGTGGGAGCTTATCCACAACAAGTTACCTTTTGAAGGCATGTCAAAT 192 Query 1047 CTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACCA 1106 |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 193 CTCCAAGCCGCTTATGCCGCTGCATTCAAGAACGTGAGGCCGAGCGCAGACGATTTACCG 252 Query 1107 AAGGATTTAGCAATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCAAAC 1166 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 253 AAGGATTTAGCAATGATCGTAACATCTTGCTGGAAAGAGGATCCAAATGATCGACCAAAC 312 Query 1167 TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCAACTGAGCTT 1226 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 313 TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCAGCAACTGAGCTT 372 Query 1227 GTTCCTCCGGCCATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACCAGAATCG 1286 ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 373 GTTCCTCCGTCCATTAAACGTGTATTCTCGTCGGAAAACACAGTATTGCCACCAGAATCG 432 Query 1287 CCGGGAACTTGCTCATTGATGACTGTTAGAGACAAAGATCAGATTCCTACCGATGCAAAC 1346 ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| Sbjct 433 CCGGGAACTTGCTCATTGATGGCTGTTAGAGACGGAGATCAGATTCCTACGGATGCAAAC 492 Query 1347 TCGGCGCAGAATGAAGTTAGAGGAAGCTTCTTCTTCTTCT---GCTGCTAATATTTGATT 1403 ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 493 TCGCCGCAGAAAGAAGTTAGAGGAAGCTTCTTCTTCTTCTTCTGCTGCTAATATTTGATT 552 Query 1404 TATT 1407 |||| Sbjct 553 TATT 556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57097277255 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5