BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40550.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330454 jgi|Araly1|330454|fgenesh1_pm.C_scaffold_7002681 1155 0.0
Ahg322874 jgi|Araly1|322874|fgenesh1_pm.C_scaffold_5000418 780 0.0
> Ahg330454 jgi|Araly1|330454|fgenesh1_pm.C_scaffold_7002681
Length=876
Score = 1155 bits (625), Expect = 0.0
Identities = 682/707 (96%), Gaps = 13/707 (2%)
Strand=Plus/Plus
Query 218 ATGTCGTCACCAGACATTGTCGGAATTTTGGAAAACACGAAGGAACTTGATCGGTTAAGG 277
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTCACCAGACATTGTCGGAATTCTGGAAAACACGAAGGAACTTGATCGGTTAAGG 60
Query 278 AAAGACCAAGAAGAAGTTTTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCT 337
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGAACAAGAAGAAGTTTTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCT 120
Query 338 CCTGAGATAGTTGAGAAGCCTGGTGATATTTCATTAGCAAAGCTTAAGAATTTGTACATT 397
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CCTGAGATAGTTGAGAAGCCTGGTGATATTTCATTGGCAAAGCTTAAGAATTTGTACATT 180
Query 398 CAAGCGAAAGAGCTCTCAGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAGTTG 457
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CAAGCGAAAGAGCTCTCCGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAATTG 240
Query 458 GATTTGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAGTTAGGCGTGGTGGCA 517
|||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 241 GATTTGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAATTA--------GG-A 291
Query 518 GAAGGTAATGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCT 577
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GAAGGCAATGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCT 351
Query 578 CCTTCCATGAGAAATCAAATCGAAGCATATGCAAGTCTTAA-GGGTGAACAGGTTGCTGC 636
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 352 CCTTCCATGAGAAATCAAATCGAAGCATATGCAAGT-TTAAAGGGTGAACAGGTTGCTGC 410
Query 637 AAGAGTTACTGCAGAGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTTATTCACTT 696
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 411 AAGAGTTACTGCAGAGAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTAATTCACTT 470
Query 697 CGATAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CGATAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 530
Query 757 AAGCGGTCAGAGGACCTATAAGTTGCCAATGTTATGCATTTTACCATT-CCCAAAGCGAA 815
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |
Sbjct 531 AAGCGGTCAGAGGACCTATAAGTTGCCAATGTCATGCATTTTACCATTTCCCAAA-CGTA 589
Query 816 ACGATCCTTCGAACACCCAAGAGTTTCCACCGGGTAAACACGTCTTAGCTGTATATCCCG 875
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 590 ACGATCCTTCGAACACCCAAGAGTTTCCAACGAGTAAACACGTCTTAGCTGTATATCCCG 649
Query 876 GGACAACAGCACTCTACAAAGCAACTGTAGTAAGTACCCCACGAAAG 922
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GGACAACAGCACTCTACAAAGCAACTGTAGTAAGTACCCCACGAAAG 696
Score = 174 bits (94), Expect = 1e-42
Identities = 100/103 (97%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 937 GTATTTGCTTGAATTCGACGATGATGAGGAAGATGGAGCATTGCCTCAAAGAACAGTACC 996
||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 774 GTACTTGCTTGAATTCGACGATGATGAGGAAAATGGAGCATTGCCTCAAAGAACTGTACC 833
Query 997 TTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAGTGA 1039
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTTCCACAAAGTGGTAGCTTTACCAGAAGGTCATCGCCAGTGA 876
> Ahg322874 jgi|Araly1|322874|fgenesh1_pm.C_scaffold_5000418
Length=840
Score = 780 bits (422), Expect = 0.0
Identities = 717/852 (84%), Gaps = 49/852 (6%)
Strand=Plus/Plus
Query 220 GTCGTCACCAGACATTGTCGGAATTTTGGAAAACACGAAGGAACTTGATCGGTTAAGGAA 279
|||||| || ||||||| |||||| || || || |||||||| |||||||||||||||||
Sbjct 6 GTCGTCGCCGGACATTGCCGGAATCTTAGATAATACGAAGGAGCTTGATCGGTTAAGGAA 65
Query 280 AGACCAAGAAGAAGTT-TTGGTTGAGATCAATAAGATGCATAAAAAGCTTCAAGCTTCTC 338
||| ||||| |||||| || || ||||| |||||||||||||| |||||||||||| | |
Sbjct 66 AGAACAAGAGGAAGTTCTT-GTGGAGATTAATAAGATGCATAAGAAGCTTCAAGCTACGC 124
Query 339 CTGAGATAGTTGAGAAGCCTGGTGATATTTCATTAG-CAAAGCTTAAGAATTTGTACATT 397
||||||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 125 CTGAGATAGTTGAGAAGCCTGGTGATACTTCATT-GTCAAAGCTTAAAAATTTGTACATT 183
Query 398 CAAGCGAAAGAGCTCTCAGAAAATGAAGTAACCGTATCGAACATTTTGCTTACTCAGTTG 457
||||| |||||||| ||||||| |||||||||||| || |||||| ||||||||||||||
Sbjct 184 CAAGCAAAAGAGCTTTCAGAAAGTGAAGTAACCGTTTCAAACATTCTGCTTACTCAGTTG 243
Query 458 GATTTGCTGCTTCCATATGGACCAACAGGGCAGCAAAGAAGAAAGTTAGGCGTGGTGGCA 517
||| |||||||||| ||||||||| ||||| ||| | ||||| | | | |
Sbjct 244 GATGCCCTGCTTCCATCTGGACCAACCGGGCAACAACGTAGAAA---A----T--T---A 291
Query 518 GAAGGTAATGATCAGAAGAGGAAGAGGATGAAAGTTGATTCAGATGTAATAAGACTTTCT 577
||||| || || |||||||| ||||| |||||||| ||||||||||||| |||| |||||
Sbjct 292 GAAGGCAACGAACAGAAGAGAAAGAGAATGAAAGTAGATTCAGATGTAACAAGAGTTTCT 351
Query 578 CCTTCCATGAGAAATCAAATCGAAGCATATGCAAGTCTTAAGGGTGAACAGGTTGCTGCA 637
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 352 CCTTCCATGAGAAATCAAATCGAGGCATATGCCAGTCTTAAGGGTGAACAGGTTGCTGCA 411
Query 638 AGAGTTACTGCAGA-GAGTGCTGATAAGGATGAATGGTTTGTGGTTAAAGTTATTCACTT 696
||||| || || || || ||| || |||||||||||||||||||| ||||||||||||||
Sbjct 412 AGAGTCACAGCCGAGGA-TGCCGAGAAGGATGAATGGTTTGTGGTAAAAGTTATTCACTT 470
Query 697 CGATAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 756
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CGACAGAGAAACAAAAGAAGTTGAAGTACTTGATGAAGAACCAGGAGATGATGAAGAAGG 530
Query 757 AAGCGGTCAGAGGACCTATAAGTTGCCAATGTTATGCATTTTACCATTCCCAAAGCGAAA 816
| | || |||||||| ||||| | |||||| ||| |||||||| || ||||| || ||
Sbjct 531 AGGTGGCCAGAGGACATATAAACTATCAATGTCATGTATTTTACCGTTTCCAAAACGGAA 590
Query 817 CGATCCTTCGAA-CACCCAAGAGTTTCCACC-GGGTAAACACGTCTTAGCTGTATATCCC 874
|||||||| || ||| |||||||||| ||| ||| |||||||| ||||||||||||||
Sbjct 591 TGATCCTTC-AAGCACACAAGAGTTTCTACCAGGG-AAACACGTGTTAGCTGTATATCCA 648
Query 875 GGGACAACAGCACTCTACAAAGCAACTGTAGTAAGTACCCCACGAAAG---AGGAAG-T- 929
|| || ||||| |||||||| ||||||||| ||||||||||||||||| || | |
Sbjct 649 GGAACCACAGCCCTCTACAAGGCAACTGTAATAAGTACCCCACGAAAGGTTAGCTATCTT 708
Query 930 CTG-ACGA------G-T-ATTT-------G--CTTG--A-A-TTCGACGATGATGAGGAA 967
||| || | | | |||| | |||| | | || || |||||||| |||
Sbjct 709 CTGCACCATTTCAAGCTCATTTCAACAATGTACTTGCTAGAATTTGATGATGATGAAGAA 768
Query 968 GATGGAGCATTGCCTCAAAGAACAGTACCTTTCCACAAAGTGGTAGCTTTACCAGAAGGT 1027
|| |||||||| |||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 769 GACGGAGCATTACCTCAAAGAACAGTGCCATTCCACAAAGTTGTAGCTTTACCAGAAGGC 828
Query 1028 CATCGCCAGTGA 1039
|| |||||||||
Sbjct 829 CACCGCCAGTGA 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5