BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40570.2
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg330452 jgi|Araly1|330452|fgenesh1_pm.C_scaffold_7002679 994 0.0
> Ahg330452 jgi|Araly1|330452|fgenesh1_pm.C_scaffold_7002679
Length=633
Score = 994 bits (538), Expect = 0.0
Identities = 607/639 (95%), Gaps = 9/639 (1%)
Strand=Plus/Plus
Query 13 ATGATGAAGGAGAAGGCGAAAGAAGGGAAGAGTCTGTTTGGGTCTCCGACGTTCGTTGAT 72
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGAAGAAGAAGGCGAAAGAAGGGAAGAGTCTGTTTGGGTCTCCGACGTTCGTTGAT 60
Query 73 CTTGGAAACGGACGGCTCAGATGCGTCGAGACTGGTCACGAGGTTTTAGCGGGAGACGTA 132
|||||||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 61 CTTGGAAACGGACGACTCAGATGCGTCGAGACTGGTGACGATGTTTTAGCCGGAGACGTA 120
Query 133 GAATCATACGCTCGTAACAAACGGTGTCGTTTAGGACTCATCAATCACGCTTTGTCTCTA 192
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 121 GAATCATACGCTCGTAACAAACGGTGTCGTTTAGGACTCATCGATCACGCTTTGTCTC-A 179
Query 193 GG-AAAGCCTCCTCTCAACATGTTCTCGCAATGCCCACTTTCTCGCATCGAAAATGGTTT 251
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGGAAAGTCTCCTCTCAACATGTTCTCGCAATGCCCACTTTCTCGCATCGAAAATGGTTT 239
Query 252 AAAGTTCTCGAAACTTGTGTGCAAGCTAACTGGAGATACTGTGAACAAGAACGAGGAACA 311
||| ||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 240 AAA---CTCGAAACTCGTGTGCAAGCTTACTGGGGATACTGTGAACAAGAACGAGGAACA 296
Query 312 TATCTGGAAACACGTGAATGGGAAAAGATTTCTTCACAAATTAGAGCAAGTGGAAAGAGG 371
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 297 TATCTGGAAACACGTGAATGGCAGAAGATTTCTTCACAAATTAGAGCAAGTGGAAAGAGG 356
Query 372 AGCTGGATCAAGCGGAAGGACTGAGGAAACACAAGTAAACAATCCAAGACACAATAAGGA 431
|||||||||||| |||||||||||| |||||||||||| ||| ||||||||||| |||||
Sbjct 357 AGCTGGATCAAGTGGAAGGACTGAGAAAACACAAGTAACCAAACCAAGACACAAGAAGGA 416
Query 432 AGATTCTGGTTCTGAGGAATCCGACTTTTGGATGC-CTAAGTCAAGTTCTGATTCAGAGT 490
|||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 417 AGATTCTGGTTCCGAGGAATCCGACTTTTGGATGCTC-AAGTCAAGTTCTGATTCAGAGT 475
Query 491 TAGATGAAGAGACTGATGAAGAAAACTGTAAAGGTTCTCATTGTGATGACAAAGAATCTG 550
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 476 CAGATGAAGAGACTGATGAAGGAAACTGTAAAGGTTCTCATTGTGATGCCAAAGAATCTG 535
Query 551 AAGAGCTCTCAGAAAGAACAAAGAGAATGTC-ACTAGAGATTGGACCAAGTAGCTTTGCT 609
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct 536 AAGAGCTCTCAGAAAGAACAAAGAGAATGTCTA-TAGAGATTGGACCAAGTAGTTTTGCT 594
Query 610 TCTAGGAAGAAAAAGAGTAAGAATGATGAGTTGTCTTAA 648
||||||||||||||||||||||||||||||| |||||||
Sbjct 595 TCTAGGAAGAAAAAGAGTAAGAATGATGAGTCGTCTTAA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29049662754
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5