BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40580.1
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493925 jgi|Araly1|493925|fgenesh2_kg.7__3358__AT5G40580.2 1543 0.0
Ahg936501 jgi|Araly1|936501|scaffold_500692.1 1016 0.0
Ahg887559 jgi|Araly1|887559|Al_scaffold_0398_1 911 0.0
Ahg475769 jgi|Araly1|475769|fgenesh2_kg.2__899__AT3G27430.2 911 0.0
Ahg908190 jgi|Araly1|908190|Al_scaffold_0002_1271 900 0.0
> Ahg493925 jgi|Araly1|493925|fgenesh2_kg.7__3358__AT5G40580.2
Length=1033
Score = 1543 bits (835), Expect = 0.0
Identities = 947/1000 (95%), Gaps = 12/1000 (1%)
Strand=Plus/Plus
Query 134 AGTGGTGAATCGGAAAATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAG 193
||||||||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||
Sbjct 7 AGTGGTGAATCGGAAAATGACGCACTCGTCCGTCGATTTACCGCCGAAAGGTGGGTTTAG 66
Query 194 CTTCGATCTGTGCAAAAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCGCCGTCGTT 253
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 67 CTTTGATCTGTGCAAAAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCTCCGTCGTT 126
Query 254 TCTCAAGACTGGAACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGG 312
||||||||||||||| ||||| ||||| ||||| ||| ||||||||||| ||||||||||
Sbjct 127 TCTCAAGACTGGAACAACTATTGTTGGGTTGAT-TTTCAAGGATGGTGTGATACTTGGGG 185
Query 313 CTGATACACGGGCAACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTGATACACGGGCAACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACT 245
Query 373 ACATGGCACCAAACATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAA 432
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 246 ACATGGCACCAAACATTTATTGTTGTGGTGCAGGAACTGCTGCTGACACTGAAGCAGTAA 305
Query 433 CTGATATGGTCAGCTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAG 492
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 306 CTGATATGGTCAGCTCACAGTTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAG 365
Query 493 TCGTTACTGCATTGACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAG 552
|| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 366 TCATTACTGCATTGACCCTTCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCAG 425
Query 553 CTGCTCTTGTGCTTGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATATACCCAC 612
|||||||||| |||||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 426 CTGCTCTTGTACTTGGTGGAGTTGACATTACCGGGCCTCATCTGCATACCATATACCCAC 485
Query 613 ACGGTTCTACTGACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGT 672
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ACGGTTCCACTGATACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGT 545
Query 673 CAGTGTTTGAAGCAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTG 732
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 546 CAGTGTTTGAAGCAAAGTATAAAGAAGGTCTAACTAGAGACGAAGGAATCAAGTTGGTTG 605
Query 733 CTGAAGCCATATGCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCT 792
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 606 CTGAAGCCATATGCTCTGGTATATTTAACGACCTTGGTAGTGGTAGCAATGTGGATATCT 665
Query 793 GTGTGATCACTAAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAA 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GTGTGATCACTAAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAA 725
Query 853 CCTATGTTAGCAGCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAA 912
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 726 CCTATGTTAGCAGCAAAGGCTATTCATTCACCAAGAAAACTGAGGTTCTACTCACCAAAA 785
Query 913 TTACACCATTATTGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAAT 972
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TTACACCATTATCGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAAT 845
Query 973 GAATCTCGTGTGAGAGACAGATACTAAGAGTGAAACCATTGTTCTACCTCACATGACAGT 1032
||||||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||
Sbjct 846 GAATCTCGTGTAAGAGAC-GACACTAAGAGTGAAATCATTGTTCTACTTCACATGACAGT 904
Query 1033 CATGTTTACATTTTCTACTTTGTTCAATATGAACGACTAAAATCGAATCGTAGTTGCCTC 1092
||| ||| | | |||||||| ||| | ||||| |||||||||||| ||||||| |
Sbjct 905 CAT-TTT-C-T-----ACTTTGTTTAATTTTAACGATTAAAATCGAATCTTAGTTGCTTT 956
Query 1093 CATTTC-GTCTTTAAATTTGGCTTGAACTTGTGATTAATG 1131
|||||| ||||||| ||||||||||||||| |||||||||
Sbjct 957 CATTTCAGTCTTTAGATTTGGCTTGAACTTATGATTAATG 996
> Ahg936501 jgi|Araly1|936501|scaffold_500692.1
Length=865
Score = 1016 bits (550), Expect = 0.0
Identities = 740/833 (89%), Gaps = 7/833 (1%)
Strand=Plus/Plus
Query 147 AAAATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGATCTGTGC 206
||||||||||| || |||| ||| | |||||||| |||||||||||||||||||||||
Sbjct 18 AAAATGTCGCAATCAGCCGTAGATGTTCCGCCAAAGGGTGGGTTTAGCTTCGATCTGTGT 77
Query 207 AAAAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCGCCGTCGTTTCTCAAGACTGGA 266
|| || ||||||||||| ||||| |||||||||||||| ||||| ||| | |||||||||
Sbjct 78 AAGAGAAATGATATGCTTACACAAAAGGGTCTTAAAGCTCCGTCTTTTTTGAAGACTGGA 137
Query 267 ACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACGGGC 325
|| || |||||||| ||||| ||| ||||||||||| ||||| ||||| ||||| || ||
Sbjct 138 ACAACCATCGTTGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCGGATACCCGAGC 196
Query 326 AACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACCAAA 385
|||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 197 AACTGAGGGGCCAATTGTTGCTGATAAGAACTGTGAGAAGATTCACTATATGGCACCAAA 256
Query 386 CATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGTCAG 445
|||||| || |||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct 257 CATTTATTGCTGTGGTGCAGGAACTGCGGCCGACACTGAAGCAGTCACTGATATGGTCAG 316
Query 446 CTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGCATT 505
||||||||||||||||||| | ||||||||||| || || ||||| ||| ||||||| ||
Sbjct 317 CTCACAGCTGCGGTTGCATCGTTACCAGACTGGTCGTGACTCTCGGGTCATTACTGCTTT 376
Query 506 GACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGTGCT 565
||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 377 GACCCTTCTCAAAAAACATCTATTCAGCTATCAAGGTCATGTCTCTGCTGCTCTTGTGCT 436
Query 566 TGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATATACCCACACGGTTCTACTGA 625
|||||||||||||| || || |||||||| || || ||||||||||||||||| |||||
Sbjct 437 CGGTGGAGTTGATATCACTGGCCCTCATCTGCATACTATATACCCACACGGTTCAACTGA 496
Query 626 CACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTGAAGC 685
|||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||
Sbjct 497 CACTCTTCCATTCGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAGGC 556
Query 686 AAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCATATG 745
||||||||||||||| |||||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct 557 AAAGTATAAAGAAGGGCTAACTAGGGATGAAGGAATTAAGCTGGTCGCTGAAGCCATATG 616
Query 746 CTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCACTAA 805
||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||
Sbjct 617 CTCGGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTGGACATCTGCGTGATCACTAA 676
Query 806 GGGGCACAAGGAATA-CTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTAGCA 864
|||| |||| ||||| || |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 677 GGGGAACAAAGAATATCT-GAGGAACTACATGGAACCAAACCCAAGAACCTATGTCAGCA 735
Query 865 GCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCATTAT 924
||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 736 GCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTGC 795
Query 925 TGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGAATC 977
||||||||||||| || |||||| | ||||||||||||||||||||||||
Sbjct 796 TGGAGCGAGTCGAGATCACAGAAGT--C-GGTGAAGCTATGGAGGAATGAATC 845
> Ahg887559 jgi|Araly1|887559|Al_scaffold_0398_1
Length=822
Score = 911 bits (493), Expect = 0.0
Identities = 720/830 (87%), Gaps = 13/830 (2%)
Strand=Plus/Plus
Query 150 ATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGATC-TGTGCAA 208
|||||||| || | || ||| | || |||| ||||||||||||||||| | |||| ||
Sbjct 1 ATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGA-CTTGTGTAA 59
Query 209 AAGGAATGATATGCTGACACAGAAGGGTCTTAAAGCGCCGTCGTTTC-TCAAGACTGGAA 267
|| ||||| ||||| ||||| |||||||||||||| ||||| |||| | ||||||||||
Sbjct 60 GAGAAATGAGATGCTTACACAAAAGGGTCTTAAAGCTCCGTC-TTTCTTGAAGACTGGAA 118
Query 268 CGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACGGGCA 326
| || || || || ||||| ||| ||||||||||| ||||| ||||| ||||| || ||
Sbjct 119 CAACCATTGTCGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGCG 177
Query 327 ACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACCAAAC 386
|| || ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 178 ACCGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACCAAAC 237
Query 387 ATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGTCAGC 446
|| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 238 ATATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGTCAGC 297
Query 447 TCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGCATTG 506
||||||||||| |||||| | ||| ||||||| || || ||||| || ||||||| ||
Sbjct 298 TCACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGCTTTA 357
Query 507 ACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGTGCTT 566
|| || ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 358 ACTCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGTGCTT 417
Query 567 GGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATAT-ACCCACACGGTTCT-ACTG 624
|||||||||||||| || || || ||||| || || || | ||||| |||||| | ||||
Sbjct 418 GGTGGAGTTGATATCACTGGCCCACATCTGCATACTAT-TGACCCAAACGGTT-TAACTG 475
Query 625 ACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTGAAG 684
| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||| |
Sbjct 476 AAACTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAGG 535
Query 685 CAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCATAT 744
| ||||| |||||||| |||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 536 CGAAGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCATAT 595
Query 745 GCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCACTA 804
|||||||||||||||| ||||| |||||||||||||| || || ||||| |||||||| |
Sbjct 596 GCTCTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCACAA 655
Query 805 AGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTAGCA 864
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 656 AGGGGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCAGCA 715
Query 865 GCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCATTAT 924
||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 716 GCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTGC 775
Query 925 TGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGA 974
||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 776 TGGAGCGAGTCGAAATTACAGAAGT--C-GGTGAAGCTATGGAGGAATGA 822
> Ahg475769 jgi|Araly1|475769|fgenesh2_kg.2__899__AT3G27430.2
Length=872
Score = 911 bits (493), Expect = 0.0
Identities = 722/833 (87%), Gaps = 13/833 (2%)
Strand=Plus/Plus
Query 147 AAAATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGATC-TGTG 205
||||||||||| || | || ||| | || |||| ||||||||||||||||| | ||||
Sbjct 13 AAAATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGA-CTTGTG 71
Query 206 CAAAAGGAATGATATGCTGACAC-AGAAGGGTCTTAAAGCGCCGTCGTTTC-TCAAGACT 263
|| || ||||| ||||| |||| || ||||||||||||| ||||| |||| | |||||
Sbjct 72 TAAGAGAAATGAGATGCTTACACAAG-AGGGTCTTAAAGCTCCGTC-TTTCTTGAAGACC 129
Query 264 GGAACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACG 322
||||| || || || || ||||| ||| ||||||||||| ||||| ||||| ||||| ||
Sbjct 130 GGAACAACCATTGTCGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCAGATACCCG 188
Query 323 GGCAACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACC 382
|| || || ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct 189 AGCGACCGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACC 248
Query 383 AAACATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGT 442
|||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 249 AAACATATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGT 308
Query 443 CAGCTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGC 502
||||||||||||||| |||||| | ||| ||||||| || || ||||| || |||||||
Sbjct 309 CAGCTCACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGC 368
Query 503 ATTGACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGT 562
|| || || ||||||||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct 369 TTTAACTCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGT 428
Query 563 GCTTGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATATACCCACACGGTTCT-A 621
|||||||||||||||||| || || || ||||| || || |||||||| |||||| | |
Sbjct 429 GCTTGGTGGAGTTGATATCACTGGCCCACATCTGCATACTCTATACCCAAACGGTT-TAA 487
Query 622 CTGACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTG 681
|||| ||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 488 CTGAAACTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTG 547
Query 682 AAGCAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCA 741
| || ||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||
Sbjct 548 AGGCGAAGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCA 607
Query 742 TATGCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCA 801
||||||||||||||||||| ||||| |||||||||||||| || || ||||| |||||||
Sbjct 608 TATGCTCTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCA 667
Query 802 CTAAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTA 861
| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 668 CAAAGGGGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCA 727
Query 862 GCAGCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCAT 921
|||||||||||||||| ||||||||||||||||||||||| || |||||||| || ||||
Sbjct 728 GCAGCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCAT 787
Query 922 TATTGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGA 974
| ||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 788 TGCTGGAGCGAGTCGAAATTACAGAAGT--C-GGTGAAGCTATGGAGGAATGA 837
> Ahg908190 jgi|Araly1|908190|Al_scaffold_0002_1271
Length=822
Score = 900 bits (487), Expect = 0.0
Identities = 719/831 (87%), Gaps = 15/831 (2%)
Strand=Plus/Plus
Query 150 ATGTCGCAGTCTTCCGTCGATATACCGCCAAAAGGTGGGTTTAGCTTCGATC-TGTGCAA 208
|||||||| || | || ||| | || |||| ||||||||||||||||| | |||| ||
Sbjct 1 ATGTCGCAATCAACAGTAGATGTTTCGGCAAAGGGTGGGTTTAGCTTCGA-CTTGTGTAA 59
Query 209 AAGGAATGATATGCTGACAC-AGAAGGGTCTTAAAGCGCCGTCGTTTC-TCAAGACTGGA 266
|| ||||| ||||| |||| || ||||||||||||| ||||| |||| | ||||| |||
Sbjct 60 GAGAAATGAGATGCTTACACAAG-AGGGTCTTAAAGCTCCGTC-TTTCTTGAAGACCGGA 117
Query 267 ACGACTATCGTTGGATTGATATTT-AAGGATGGTGTAATACTTGGGGCTGATACACGGGC 325
|| || || || || ||||| ||| ||||||||||| ||||| ||||| ||||| || ||
Sbjct 118 ACAACCATTGTCGGTTTGAT-TTTCAAGGATGGTGTGATACTAGGGGCAGATACCCGAGC 176
Query 326 AACTGAAGGGCCTATTGTGGCTGATAAGAACTGTGAGAAGATTCACTACATGGCACCAAA 385
|| || ||||| ||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 177 GACCGAGGGGCCCATTGTTGCTGATAAAAACTGTGAAAAGATTCACTATATGGCACCAAA 236
Query 386 CATTTACTGTTGTGGTGCAGGAACCGCTGCTGACACTGAAGCAGTAACTGATATGGTCAG 445
||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 237 CATATATTGTTGTGGTGCAGGAACCGCGGCTGACACTGAAGCAGTTACTGATATGGTCAG 296
Query 446 CTCACAGCTGCGGTTGCATAGATACCAGACTGGCCGAGATTCTCGAGTCGTTACTGCATT 505
|||||||||||| |||||| | ||| ||||||| || || ||||| || ||||||| ||
Sbjct 297 CTCACAGCTGCGATTGCATCGTTACGAGACTGGTCGTGACTCTCGGGTTATTACTGCTTT 356
Query 506 GACCCTTCTCAAAAAACATCTTTTCAGCTACCAAGGCCATGTCTCAGCTGCTCTTGTGCT 565
|| || ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct 357 AACTCTCCTCAAAAAACATCTTTTCAGCTATCAAGGTCATGTCTCTGCTGCGCTTGTGCT 416
Query 566 TGGTGGAGTTGATATTACCGGGCCTCATCTTCACACGATAT-ACCCACACGGTTCT-ACT 623
||||||||||||||| || || || ||||| || || || | ||||| |||||| | |||
Sbjct 417 TGGTGGAGTTGATATCACTGGCCCACATCTGCATACTAT-TGACCCAAACGGTT-TAACT 474
Query 624 GACACTCTACCATTTGCTACAATGGGTTCTGGTTCCCTTGCTGCCATGTCAGTGTTTGAA 683
|| ||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 475 GAAACTCTTCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCTATGTCTGTGTTTGAG 534
Query 684 GCAAAGTATAAAGAAGGTCTAACTAGAGATGAAGGAATCAAGTTGGTTGCTGAAGCCATA 743
|| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 535 GCGAAGTACAAAGAAGGCCTAACTAGGGATGAAGGAATTAAGTTGGTCGCTGAAGCCATA 594
Query 744 TGCTCTGGTATATTCAACGACCTTGGTAGTGGTAGCAATGTGGATATCTGTGTGATCACT 803
||||||||||||||||| ||||| |||||||||||||| || || ||||| ||||||||
Sbjct 595 TGCTCTGGTATATTCAATGACCTGGGTAGTGGTAGCAACGTAGACATCTGCGTGATCACA 654
Query 804 AAGGGGCACAAGGAATACTTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTTAGC 863
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 AAGGGGAACAAGGAATACCTGAGGAATTACATGGAACCAAACCCAAGAACCTATGTCAGC 714
Query 864 AGCAAAGGCTATTCATTCACCAAGAAAACCGAGGTTCTACTCACCAAAATTACACCATTA 923
|||||||||||||| ||||||||||||||||||||||| || |||||||| || |||||
Sbjct 715 AGCAAAGGCTATTCCTTCACCAAGAAAACCGAGGTTCTTCTTACCAAAATCACCCCATTG 774
Query 924 TTGGAGCGAGTCGAAATTGTAGAAGTGGCTGGTGAAGCTATGGAGGAATGA 974
||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct 775 CTGGAGCGAGTCGAAATTACAGAAGT--C-GGTGAAGCTATGGAGGAATGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44756304558
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5