BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40600.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355923 jgi|Araly1|355923|fgenesh1_pg.C_scaffold_7003096 1092 0.0
> Ahg355923 jgi|Araly1|355923|fgenesh1_pg.C_scaffold_7003096
Length=723
Score = 1092 bits (591), Expect = 0.0
Identities = 682/726 (94%), Gaps = 6/726 (1%)
Strand=Plus/Plus
Query 320 ATGACTCCTTCATTGGAGAGCAATAGAACTGGACCAGACTTTTTTGGCTACTACAGAGCT 379
|||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||| ||
Sbjct 1 ATGACTCCTTCATTGGAGAGCAGTAAAACTGGACCAGACGTTTTTGGCTACTATAGAACT 60
Query 380 CAAGTAGAAGAGCTCTTGTCTCAAGAAGAGAAGATACCTCATCATAACCATGTGGATGCT 439
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 61 CAAGTAGAAGAGCTCTTATCTCAAGAAGAGAAGATCCCTCATCATAAACATGTGGATACT 120
Query 440 AAGAAGTCTTCTGCTGAGATTATAGGAGCTGAGTTGTCGGATGTCAAACAGGAGAAGTTG 499
|||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 121 AAGAAGTCTTCTACTGAGATTATAGGAGCTGAGTTGTCGGATCTCAAAAACGAGAAGTTG 180
Query 500 AATGCCTTGTTAAGGCAGTGTGTGTTGAATTCCATTCCAGAAGTTGATGAGATGCAGTCT 559
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 AATGCATTGTTAAGGCAGTGTGTGTTGGATTCCATTCCAGAAGTTGATGAGATGCAGTCA 240
Query 560 CGTGTTGATTCAATGTATCTGATGTCTCAGTTGAGTAATAAAAAACGGTCAACCTTACCA 619
|||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 CGTGTTGATTCATTGCATCTGATGTCTCAGTTGAGTAATAAAAAACCGTCAACCTTACCA 300
Query 620 ACCAATGCTGAGTCTGTGATTCCTGAGGATCCTAGGTGTAAAGAGGTGGAAGATGATTTA 679
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 301 ACCAATGCTGAGTCTGTGATTCCTGAGGATCCTTCGTTTAAAGAGGTGGAAGATGATTTA 360
Query 680 CGATTACTTATGAAGTCTGATCCTAG-TCTTGTTAAGGAAATAGTGGGCAAACATTCAAG 738
| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 361 CAATTACTTATGAAGTCTGATCCT-GCTCTTGTTAAGGAAATAGTGGGCAAACATTCAAG 419
Query 739 TGATCTACTTGCCAGATTGAACGA-GAGACAGCAGCACCTTGAGAAGCTACTTGACAATG 797
||||||||||||||||||||| || | | |||||||| |||||||| |||||||||||||
Sbjct 420 TGATCTACTTGCCAGATTGAATGACGTG-CAGCAGCAACTTGAGAAACTACTTGACAATG 478
Query 798 TGGTAACCACTTGCAGACCTATGAGCCGTGGAGAGAAGCGAGATCTTCAGAAATCAATTA 857
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 TGGTAACCACATGCAGACCTATGAGCCGTGGAGAGAAGCGAGATCTTCAGAGATCAATTA 538
Query 858 AGGAACTACCTGCAAAAAATCTTGAACGTGTTGCTGGAATCATCAAAAACCACTATGTAG 917
||||| |||||| | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 AGGAATTACCTGGAGAAAATCTTGAACGCGTTGCTGGAATCATCAAAAACCACTATGTAG 598
Query 918 CTTTGGGGAAAGAAATGCCTGATGATGTTTTCGTCATCAACATGGAGGAGGAGGACAA-A 976
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 CTTTGGGTAAAGAAATGCCTGATGATGTTTTCGTCATCAACATGGAGGAGGAGGACAACA 658
Query 977 GTACTGCTTTGGAGATTGCATTATTTTGTTGTCGCAGTCCAGAGCGCAAGGAAACTCGCT 1036
|||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||
Sbjct 659 -TACTGCTTTGGAGATTGCATTATTTTGTCGCCGCAGTCAAGAGTGCAAGGAAACTCGCT 717
Query 1037 AGCTGA 1042
||||||
Sbjct 718 AGCTGA 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5