BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40610.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493921 jgi|Araly1|493921|fgenesh2_kg.7__3354__AT5G40610.1 2300 0.0
> Ahg493921 jgi|Araly1|493921|fgenesh2_kg.7__3354__AT5G40610.1
Length=1407
Score = 2300 bits (1245), Expect = 0.0
Identities = 1363/1418 (96%), Gaps = 16/1418 (1%)
Strand=Plus/Plus
Query 1 ATAGAGAATTGAAGACACTGCTACTGTTACTTCCACGTAAACG-TTtctctctctctctc 59
||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1 ATAGAGAATTGAAGACACTACTACTGTTACTTACACGTACACGCTTTCTCTCTCTCTCTC 60
Query 60 AACGTCAAACGTGTCCCCTTTCAAATCTCCATCTTCCATGCGCTTCCGATCAttcttctt 119
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 61 AACGTCAAACGTGTCCCCTTTCAAATCTCCATCTTCCATGCGCCTCCGATC---CTTCTT 117
Query 120 ctcctcctctatcttctccctttcacattct-cgctctccttctctt--tcttcctctcg 176
|| | ||||||||||||| ||||||||||| || ||| |||| ||| || ||||||||
Sbjct 118 CT--T-CTCTATCTTCTCCTTTTCACATTCTCCG-TCT-CTTC-CTTCCTCCTCCTCTCG 171
Query 177 tttctcctctctctc-cgccgctatgtctcctgctctcGAGAAATCCCGACAAGGCAATG 235
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTTCTCCTCTCTC-CGCGCCGCTATGTCTCCTGCTCTCGAGAAATCCCGACAAGGCAATG 230
Query 236 GTGGATGTAATGATGATTCGAAATCTAAGGTCACGGTCGTTGGTAGTGGCAATTGGGGAA 295
||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 231 GTGAATGTAATGAGGTTTCGAAATCTAAGGTTACGGTCGTTGGTAGTGGCAATTGGGGAA 290
Query 296 GTGTTGCTGCTAAGCTCATTGCTTCTAATGCCCTCAAGCTTCCTTCTTTCCATGATGAAG 355
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 291 GTGTTGCTGCTAAGCTCATTGCTTCTAATGCCATCAAGCTTCCTTCTTTCCATGATGAAG 350
Query 356 TGAGGATGTGGGTGTTTGAGGAGGTTCTACCAAATGGTGAGAAGCTCAATGATGTTATCA 415
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 351 TGAGGATGTGGGTGTTTGAGGAGGTTCTACCAAATGGTGAGAAGCTTACTGATGTTATCA 410
Query 416 ACAAGACCAATGAAAATGTCAAGTACCTCCCTGGGATTAAGCTAGGAAGAAATGTTGTTG 475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 411 ACAAGACCAATGAAAATGTCAAGTACCTTCCTGGGATTAAGCTAGGAAGAAATGTTGTTG 470
Query 476 CGGATCCTGACCTTGAAAATGCAGTGAAGGACGCGAACATGTTGGTTTTTGTTACACCGC 535
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 471 CGGATCCTGACCTTGAAAATGCAGTGAAGGAAGCAAACATGTTGGTTTTTGTTACACCGC 530
Query 536 ATCAGTTTATGGATGGTATATGCAAGAAGTTAGATGGAAAGATCACAGGAGATGTTGAGG 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 531 ATCAGTTTATGGATGGTATATGCAAGAAATTAGATGGAAAGATCACAGGAGATGTTGAGG 590
Query 596 CTATATCTCTTGTTAAAGGAATGGAAGTGAAGAAGGAAGGTCCTTGTATGATCTCAAGTC 655
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 591 CTATATCTCTTGTTAAGGGAATGGAAGTGAAGAAGGAAGGTCCATGTATGATCTCAAGTC 650
Query 656 TCATTTCCAAGCAACTTGGTATCAATTGTTGTGTTCTTATGGGCGCAAACATTGCAAACG 715
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 651 TCATTTCCAAGCAACTTGGTATCAATTGTTGTGTTCTTATGGGGGCAAACATTGCAAACG 710
Query 716 AGATAGCTGTGGAGAAGTTTAGTGAAGCAACGGTTGGATATAGAGGGAGTAGAGAAATAG 775
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 711 AGATAGCTGTGGAGAAGTTTAGTGAAGCAACAGTTGGATATAGAGGAAGTAGAGAAATAG 770
Query 776 CGGACACATGGGTTCAGTTGTTTAGTACTCCGTATTTTATGGTCACACCGGTCCATGATG 835
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CAGACACATGGGTTCAGTTGTTTAGTACTCCGTATTTTATGGTCACACCGGTCCATGATG 830
Query 836 TGGAAGGAGTAGAGTTATGTGGGACTTTGAAGAATGTAGTTGCTATTGCAGCGGGTTTCG 895
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 831 TGGAAGGAGTAGAGTTGTGTGGGACCTTGAAGAATGTAGTGGCTATTGCAGCGGGTTTCG 890
Query 896 TGGACGGTTTGGAAATGGGTAATAACACAAAGGCTGCAATCATGAGGATTGGTCTAAGAG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TGGACGGTTTGGAAATGGGTAATAACACAAAGGCTGCAATCATGAGGATTGGTCTAAGAG 950
Query 956 AGATGAAAGCACTCTCAAAGCTTTTGTTTCCATCTGTTAAAGATAGTACTTTCTTCGAGA 1015
|||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 951 AGATGAAAGCGCTCTCAAAGCTTCTGTTTCCATCTGTTAAAGACAGTACTTTCTTCGAAA 1010
Query 1016 GCTGCGGTGTAGCAGATGTCATTACAACTTGCTTAGGAGGAAGAAACCGGAGAGTTGCGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1011 GCTGCGGTGTAGCAGATGTCATTACAACTTGCTTAGGAGGAAGAAACCGAAGAGTTGCGG 1070
Query 1076 AAGCATTTGCAAAAAGCAGAGGAAAAAGGTCTTTTGATGAGCTTGAAGCAGAGATGCTAC 1135
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AAGCATTTGCAAAAAGCGGAGGAAAAAGGTCTTTTGATGAGCTTGAAGCAGAGATGCTAC 1130
Query 1136 AAGGGCAAAAGCTACAGGGGGTATCGACGGCAAGAGAGGTCTACGAGGTGTTGAAACATT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1131 AAGGGCAAAAGCTACAGGGGGTATCGACGGCAAGAGAGGTCTACGAGGTGTTGAACCATT 1190
Query 1196 GTGGATGGTTGGAGATGTTTCCGCTCTTTTCAACGGTTCACCAAATCTGCACTGGTCGTC 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1191 GTGGATGGTTGGAGATGTTTCCGCTCTTTTCAACGGTTCACCAAATCTGCACGGGTCGTC 1250
Query 1256 TTCAACCTGAAGCCATCGTCCAATACCGCGAGAACAAACTATAACTTTTTATTGATGGTA 1315
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1251 TTCAGCCTGAAGCCATCGTCCAATACCGCGAGAACAAACTATAA-TTTTTATTGATGGTA 1309
Query 1316 CATTCATCTTCAAAGATTGATGAATTTGATGTAGAGGTTAACGTTTTTGTGTGCGCCTGT 1375
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1310 CATTCATCTTCAAAGATTGATGAATTTGGTGTAGAGGTTATCGTTTTTGTGTGCGCCTGT 1369
Query 1376 TTGCTGGTTAGTGAACCTTGTAGCTTGCTTGGACCGAG 1413
|||||||| |||||||||||||| ||||||||||||||
Sbjct 1370 TTGCTGGTGAGTGAACCTTGTAGTTTGCTTGGACCGAG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5