BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40620.1

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493920 jgi|Araly1|493920|fgenesh2_kg.7__3353__AT5G40620.1         385    2e-106


> Ahg493920 jgi|Araly1|493920|fgenesh2_kg.7__3353__AT5G40620.1
Length=384

 Score =  385 bits (208),  Expect = 2e-106
 Identities = 344/404 (85%), Gaps = 31/404 (8%)
 Strand=Plus/Plus

Query  1    ATGTCTCGAC-A-ACATTTCTCTTTCGTAATTCTTTTCATAGGTCTTGCTCTAGCCGGTG  58
            |||| ||||| | || ||| ||||||||||  | | ||||||| |||||| |||||||||
Sbjct  1    ATGTTTCGACGATAC-TTT-TCTTTCGTAA--C-TCTCATAGGACTTGCTTTAGCCGGTG  55

Query  59   GAGCTTATGCCGCCAATTCATCTGCACCTTCTCCACCGTCA-A-A-TAGCACAAACtttt  115
            ||||||||||||| ||||||||| ||||||||||||||||| | | ||||||  |    |
Sbjct  56   GAGCTTATGCCGCAAATTCATCTCCACCTTCTCCACCGTCAGATAGTAGCACCGAGAAAT  115

Query  116  tttttCCGGAGACCCCCTTCATCTCCACGGTT-AACGCAACGGTCGTTCCTGCAGATTAC  174
             |  ||||| |||||||| | || || | ||| ||||||||| ||||| |  ||||||||
Sbjct  116  CTCCTCCGGCGACCCCCTCCCTCCCCTC-GTTGAACGCAACGTTCGTT-C--CAGATTAC  171

Query  175  TCTGATTACGAAGTCCCTATGAATCTAGCACCTGATGGAGTC-AAAGTCGTGCAAGATGA  233
            || |||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |
Sbjct  172  TCCGATTACGAAGTCCCGATGAATCTAGCACCTGATGGAGTCGAAA-TCGTGCAAGATTA  230

Query  234  CTTGCCACTTG-TCGAAGAAGAAGATAAAGAAGCTGATGAGTTTGCACAACCTGAAGGTA  292
            | ||||| ||| || |||| ||||||||||||||||||||    |     | ||||||||
Sbjct  231  CGTGCCAATTGTTC-AAGATGAAGATAAAGAAGCTGATGA----G-----CTTGAAGGTA  280

Query  293  AATCAGATAAGAAAGCAAATCAGCCTAAGGACTCAG---CTTCTTCTTCTTATTCTTCCT  349
            |||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||
Sbjct  281  AATCAGATAAGAAAGCAAATCAACCTAAGGACTCAGCTTCTTCTTCTTCTTATTCTTCCT  340

Query  350  CTTTCGTCGTCTTTGTCGTTGCTGCTGGATTGTTTTTATTTTGA  393
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  CTTTCGTCGTCTTTGTCGTTGCTGCTGGATTGTTTTTATTTTGA  384



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14079412341


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5