BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40630.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg947683 jgi|Araly1|947683|scaffold_703912.1                        861    0.0  


> Ahg947683 jgi|Araly1|947683|scaffold_703912.1
Length=537

 Score =  861 bits (466),  Expect = 0.0
 Identities = 517/540 (96%), Gaps = 9/540 (2%)
 Strand=Plus/Plus

Query  23   aaagagagagagaaagaTAATGGGAAAGTTAATGGCAAAGAGGTTTTGCATTGGGTTTGG  82
            ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  7    AAAGAAAGAGAGAGAGAGAATGGGAAAGTTAATGGCAAAGAGGTTTTGCATTGGGTTTGG  66

Query  83   GTGTGGAAGAATTGGGACGGGCAACAATAAAAGatcatcatcttcttcttcttcttcatc  142
             |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | 
Sbjct  67   ATGTGGAAGAATTGGGACGGGCAACAACAAAAGATCATCATCATCTTCTTCTTCTTC-T-  124

Query  143  gtcattttcatcattatcatcatcatcttcttcttcatcgtcatcatGTAACAATAACAA  202
             ||||  ||||||||||||||||||      |||||||| ||||||||||||||||||||
Sbjct  125  -TCATCATCATCATTATCATCATCA------TCTTCATCTTCATCATGTAACAATAACAA  177

Query  203  CATAAAATGGGAGATGAGGCCTGGAGGGATGCTGGTTCAGAAGAGATCAGAAGATTCTAA  262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  CATAAAATGGGAGATGAGGCCTGGAGGGATGCTGGTTCAGAAGAGATCAGAAGATTCTAA  237

Query  263  CACTGAAGATTTAATCAGCCTTAGAGTCTCCACTGTCTCTCAGCTTTCATATGAAATCTC  322
            |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  238  CACTGAAGATCTAATCAGCCTTAGAGTCTCCACTGTTTCTCAGCTTTCATATGAAATCTC  297

Query  323  CATTGATGCCAACTCTACTTTCGGTGAATTGAAGATGATGATAGCAATAGTGAGTGGAAT  382
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  CATTGATGCCAACTCCACTTTCGGTGAATTGAAGATGATGATAGCAATAGTGAGTGGAAT  357

Query  383  TGAGGCAAAAGAGCAAAGACTCTTGTTCAGAGGAAAGGAAAGAGAAGACAGAGAATACTT  442
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  358  TGAGGCAAAAGAGCAAAGACTATTGTTCAGAGGAAAGGAAAGAGAAGACAGAGAATACTT  417

Query  443  ACACATGATTGGTGTTGGAGATGGAGATAAGGTCTTTTTATTACAAGATCCTGCTTTTAA  502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  ACACATGATTGGTGTTGGAGATGGAGATAAGGTCTTTTTATTACAAGATCCTGCTTTTAA  477

Query  503  GGAGTTGAAACATATTCATCTCCCAATTACTGTCTAACTAATTCCTTACTTTATTAATTG  562
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  478  GGAGTTGAAACATATTCATCTCCCAATTACTGTCTAATTAATTCCTTACTTTATTAATTG  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5