BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40630.1 Length=801 Score E Sequences producing significant alignments: (Bits) Value Ahg947683 jgi|Araly1|947683|scaffold_703912.1 861 0.0 > Ahg947683 jgi|Araly1|947683|scaffold_703912.1 Length=537 Score = 861 bits (466), Expect = 0.0 Identities = 517/540 (96%), Gaps = 9/540 (2%) Strand=Plus/Plus Query 23 aaagagagagagaaagaTAATGGGAAAGTTAATGGCAAAGAGGTTTTGCATTGGGTTTGG 82 ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 7 AAAGAAAGAGAGAGAGAGAATGGGAAAGTTAATGGCAAAGAGGTTTTGCATTGGGTTTGG 66 Query 83 GTGTGGAAGAATTGGGACGGGCAACAATAAAAGatcatcatcttcttcttcttcttcatc 142 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 67 ATGTGGAAGAATTGGGACGGGCAACAACAAAAGATCATCATCATCTTCTTCTTCTTC-T- 124 Query 143 gtcattttcatcattatcatcatcatcttcttcttcatcgtcatcatGTAACAATAACAA 202 |||| |||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 125 -TCATCATCATCATTATCATCATCA------TCTTCATCTTCATCATGTAACAATAACAA 177 Query 203 CATAAAATGGGAGATGAGGCCTGGAGGGATGCTGGTTCAGAAGAGATCAGAAGATTCTAA 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 CATAAAATGGGAGATGAGGCCTGGAGGGATGCTGGTTCAGAAGAGATCAGAAGATTCTAA 237 Query 263 CACTGAAGATTTAATCAGCCTTAGAGTCTCCACTGTCTCTCAGCTTTCATATGAAATCTC 322 |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 238 CACTGAAGATCTAATCAGCCTTAGAGTCTCCACTGTTTCTCAGCTTTCATATGAAATCTC 297 Query 323 CATTGATGCCAACTCTACTTTCGGTGAATTGAAGATGATGATAGCAATAGTGAGTGGAAT 382 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 CATTGATGCCAACTCCACTTTCGGTGAATTGAAGATGATGATAGCAATAGTGAGTGGAAT 357 Query 383 TGAGGCAAAAGAGCAAAGACTCTTGTTCAGAGGAAAGGAAAGAGAAGACAGAGAATACTT 442 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 358 TGAGGCAAAAGAGCAAAGACTATTGTTCAGAGGAAAGGAAAGAGAAGACAGAGAATACTT 417 Query 443 ACACATGATTGGTGTTGGAGATGGAGATAAGGTCTTTTTATTACAAGATCCTGCTTTTAA 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 ACACATGATTGGTGTTGGAGATGGAGATAAGGTCTTTTTATTACAAGATCCTGCTTTTAA 477 Query 503 GGAGTTGAAACATATTCATCTCCCAATTACTGTCTAACTAATTCCTTACTTTATTAATTG 562 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 478 GGAGTTGAAACATATTCATCTCCCAATTACTGTCTAATTAATTCCTTACTTTATTAATTG 537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29583383592 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5