BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40640.1
Length=2230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493918 jgi|Araly1|493918|fgenesh2_kg.7__3351__AT5G40640.1 3520 0.0
Ahg484528 jgi|Araly1|484528|fgenesh2_kg.5__520__AT3G27390.1 1042 0.0
Ahg947653 jgi|Araly1|947653|scaffold_703882.1 137 3e-31
> Ahg493918 jgi|Araly1|493918|fgenesh2_kg.7__3351__AT5G40640.1
Length=2184
Score = 3520 bits (1906), Expect = 0.0
Identities = 2102/2196 (96%), Gaps = 16/2196 (1%)
Strand=Plus/Plus
Query 37 tctctctctcGAATCTTTCGTGTTGTTTGCTGTTCAAAATTGAAATTTTAAATAT-T-aa 94
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 1 TCTCTCTCTCGAATCTTTCGTGTTGTTTACTGTTCAAAATTGAAATTTTAAATATATAAA 60
Query 95 aaaaaa-aGAAGAAAACTTGTTCTGCTTCTTGTCGTGTCCGTCACAGTTTGAATTtctct 153
|||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAAAAACAGAAGATAACTTGTTCTGCTTCTTGTCGTGTCTGTCACAGTTTGAATTTCTCT 120
Query 154 ctctctttctctctTCCTCATAAAAATCTCTGCTTTACCTTTTCTTTTCAAAGGGTTTCA 213
||||| |||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 121 CTCTC--TCTCTCTTCCTCATAAAAATCTCTACTTTACCTTTAGTTTTCGAAGGGTTTCA 178
Query 214 TTTTGATTCTAGGGTTGTTCTAAATGCGACATTTTGACTGATGGGTCTTTGTTGAATTTG 273
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 179 TTTTGATTCTA-GG--GTTCTAAATGCGACATTTTGACTGATGGGTCTCTGTTGAATTCG 235
Query 274 AAGAGAGCAAAAGAGAAAGAGATTGTTCTAATGGAGCCTCCAACGGGAATCTTGGCTTCT 333
|||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 AAGAGA--AAAAGAG-AA-AGATAGTTCTAATGGAGCCTCCAACGGGAATCTTGGCTTCT 291
Query 334 CTGTGGCAATTTATACTCTTCATTCCTTATTTCACTGGTTTACTGCTTCTCGGTGTCATT 393
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 292 CTGTGGCAATTTATACTCTTCATTCCTTATTTCACTGGATTACTGCTTCTTGGTGTCATT 351
Query 394 AAAGGTATCGTTTTATGCCCGCTTATATGCCTTACTGTGGCTATTGGAAACTCTGCAATC 453
||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 AAAGGCATCGTTTTCTGCCCGCTTATATGCCTTATTGTGGCTATTGGAAACTCTGCAATC 411
Query 454 ATCTTAGGCCTTTTACCAGTACACGCGATTTGGACTCTATATTCGATAGCGAGTGCTAAA 513
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATCTTAGGTCTTTTACCGGTACACGCGATTTGGACTCTATATTCGATAGCGAGTGCTAAA 471
Query 514 CAGTTAGGACCAATCCTGAAGATCTTTCTGTGTTTATGCGTTCCTCTTGGTGTCATTCTC 573
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 472 CAGTTAGGACCGATCTTGAAGATCTTTCTGTGTTTATGCGTTCCTCTTGGTGTCATCCTC 531
Query 574 TGGCTTGTGGTTAGTATCTTAGGAAGTGTTCTTGGAGGAGCTATTTATGGATTTCTTTCT 633
|||||||||||||||||| |||| ||| |||| ||||||||||| ||||| |||||||||
Sbjct 532 TGGCTTGTGGTTAGTATCGTAGGGAGTATTCTCGGAGGAGCTATATATGGTTTTCTTTCT 591
Query 634 CCAATATTTGCTACTTTCGATGCTGTTGGTGAAGGGAAGTCTAATCCGTTTTTCCATTGC 693
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 592 CCAATATTTGCTACATTCGATGCTGTTGGCGAAGGGAAGTCTAATCCGTTTTTCCATTGC 651
Query 694 TTTTATGATGGAACTTGGAGCACTGTTCAAGGCAGTTTCACCGTTGTTTGTGATTTTAAA 753
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 652 TTTTATGATGGAACTTGGAGCACTGTTCAAGGCAGTTTCACCGTTGTCTGCGATTTTAAA 711
Query 754 GATGTTTGCTTTCACTCCTACTTTTCTTTTATGGATGATCTTCGAACATCTACTGCGAAC 813
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 712 GATGTTTGCTTTCACTCCTACTTTTCTTTTATGGATGATCTTCGAACATCTAGTGCGGAT 771
Query 814 CGTCACTATTATGAAATAAGGTTACTTCAAATTCCAGGTGCTGTGATTGTTGCGGTTCTC 873
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 772 CGTCACTATTATGAAATAAGGTTACTTCAAATTCCAGGCGCTGTGATTGTTGCGGTTCTC 831
Query 874 GGAATTCTTGTTGATTTCCCAGTGATTTCACTCTTAGCATTGTGTAAAAGCCCGTACATG 933
|||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 832 GGAATTCTTGTTAATTTTCCAGTAATTTCACTCTTAGCATTGTGTAAAAGCCCGTACATG 891
Query 934 TTGTTCAAAGGGTGGCACCGTTTGTTTCATGATCTCATTGGACGTGAAGGTCCTTTCTTG 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTGTTCAAAGGGTGGCACCGTTTGTTTCATGATCTCATTGGACGTGAAGGTCCTTTCTTG 951
Query 994 GAAACAATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTT 1053
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GAAACAATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTC 1011
Query 1054 GGAGCAGTTTTAGGATCCGTGGTCTCTAGTGTCTTCCTTGGTGCTTATGGCGGTGTAGTC 1113
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 GGAGCAGTTTTAGGATCCATGGTCTCTAGTGTCTTCCTCGGTGCTTATGGCGGTGTAGTC 1071
Query 1114 TCATATCAGGAGTCATCGTTCTTCTTCGGTCTCTGCTATGTTGTTGCTTCTGTTTCTATT 1173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TCATATCAGGAGTCATCGTTCTTCTTCGGTCTCTGCTATGTTGTTGCTTCTGTTTCTATA 1131
Query 1174 TACGATGAGTATAGCAACGATGTTCTTGATATGCCTGAAGGTTCTTGCTTTCCCAGGCCA 1233
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1132 TATGATGAGTATAGCAACGATGTTCTTGACATGCCTGAAGGTTCTTGCTTTCCCAGGCCA 1191
Query 1234 ATATATCGAAGAAACGAAGAGGGCGCTAGTACGGCATTTTCTGGTGGTCTTTCAAGACCG 1293
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1192 ATATATCGAAGAAACGAAGAGGTCGCTAGTACGGCATTTTCTGGTGGTCTTTCAAGACCA 1251
Query 1294 AACTCCTTCAAGACAACTCCATCAAGAGGAGGATCAAACAAAGGCCCAATGATTGACCTG 1353
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AACTCTTTCAAGACAACTCCATCAAGAGGAGGATCAAACAAAGGCCCAATGATTGACCTG 1311
Query 1354 AAACCGCTTGATCTTTTGGAGGCTCTATTTGTGGAATGTAGGCGGCACGGAGAGATTATG 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAACCGCTTGATCTTTTGGAGGCTCTATTTGTGGAATGTAGGCGGCACGGAGAGATTATG 1371
Query 1414 GTAACGAAAGGGATTATAAATTCAAAAGACATTGAAGAAGCTAAATCTAGCAAAGGCAGT 1473
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1372 GTAACGAAAGGGATTATAAATTCAAAAGACATCGAGGAAGCTAAATCTAGCAAAGGCAGT 1431
Query 1474 CAAGTGATCAGCTTTGGCTTACCTGCTTATTCTCTTCTTCACGAGCTTTTACGCTCTATC 1533
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1432 CAAGTGATCAGCTTTGGTTTACCTGCTTATTCTCTTCTTCAAGAGCTTTTACGCTCTATC 1491
Query 1534 AAATCTAACTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGATAACTACCAGAAAC 1593
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 AAATCTAATTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGATAACTACCAGAAAC 1551
Query 1594 CGCCCAAAAGATGCGTTTTTTGATTGGTTTCTGAATCCGTTTTTGATCCTTAAAGACCAG 1653
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1552 CGCCCAAAAGATGCGTTTTTTGACTGGTTTCTGAATCCGTTTTTGATCCTTAAAGACCAG 1611
Query 1654 ATCGAAGCTGCAAACCTATCCGAGGAAGAAGAAGAGTATCTTGGTAAATTGGTATTACTC 1713
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||
Sbjct 1612 ATCGAAGCTGCAAACCTATCTGTGGAAGAAGAAGAGTATCTTGGTAAATTGGTACTGCTC 1671
Query 1714 TTTGGAGATTCAGAGAGACTTAAAAGCTCCATTGTTGAATCTGAATCTCCTCCTCTAACT 1773
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1672 TTTGGAGATTCCGAGAGACTTAAAAGCTCCATTGTTGAATCTGAATCTCCTCCTTTAACC 1731
Query 1774 GAACTCAGAAAAGCCGAACTTGATGCCTTTGCTCGCAGGCTTCAAGGATTAACCAAATCA 1833
|||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1732 GAACTCAGGAAAGGCGAACTTGATGCATTTGCTCGCAGGCTTCAAGGATTAACCAAATCA 1791
Query 1834 GTATCAAGATATCCAACATTCAGAAGACATTTTGTGGAACTAGTCAAGAAACTATCAAAT 1893
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1792 GTATCAAGATATCCAACATTCAGAAGACATTTTGTGGAACTGGTCAAGAAACTATCAAAT 1851
Query 1894 GATCTAGACAATAAACATAACCGTTTTGAAGGCGGTTCGAGATCAGTTCCACGTCCCGGG 1953
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1852 GATCTAGACAATAAACATAACCGTTTTGAAGGCGGTTCAAGATCAGTTCCACGTCCCGGG 1911
Query 1954 AAAACGGTGTCTCGGATTTTCAGCCAAAAATCGTTCAAGAAAAAGACAAGTAGCAATGGG 2013
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1912 AAAACGGTGTCTCGGATTTTCAGTCAGAAATCGTTCAAGAAAAAGACAAGCAGCAATGGG 1971
Query 2014 TCAGATCAAGATTCACCAAACAGAGGGTTAAGAGACATTGATATTGTGTAAGTAAATGTT 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 TCAGATCAAGATTCACCAAACAGAGGGTTAAGAGACATTGATATTGTGTAAGTAAATGTT 2031
Query 2074 ATGCGACCAGAATTAGACCGAAACTTCGTCTGCTTTTAGCTCTGTAATGATAAATTTATA 2133
|| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2032 GTGTGACCAGAATTAGATCGAAACTGCGTCTGTTTTTAGCTCTGTAATGATAAATTTATA 2091
Query 2134 CAGATTCCAAGTGAATATGAAACTGTTTC-ATTTATCTAACAAATGTTTTACATTCAGCT 2192
|||||||||||||||||||||||||||| || | ||||||||||||||| || ||||||
Sbjct 2092 CAGATTCCAAGTGAATATGAAACTGTTTTGATGT-TCTAACAAATGTTTTTCACTCAGCT 2150
Query 2193 TTTGCTTGATGATGTGTTGTTTCTCAGAAACAGCAG 2228
| ||||||||||||| | ||| ||||||||||||||
Sbjct 2151 TGTGCTTGATGATGT-T-GTTCCTCAGAAACAGCAG 2184
> Ahg484528 jgi|Araly1|484528|fgenesh2_kg.5__520__AT3G27390.1
Length=2132
Score = 1042 bits (564), Expect = 0.0
Identities = 1298/1640 (79%), Gaps = 99/1640 (6%)
Strand=Plus/Plus
Query 299 TTCTAATGGAGCCTCCAACGGGAATCTT-G-GCTTC-TCTGTGGCAATT-TATACTCTTC 354
||| |||||||||||||| || || || | ||| | | ||| ||||| | ||||||||
Sbjct 216 TTC-AATGGAGCCTCCAAATGG-AT-TTCGAGCTACGT-TGTTACAATTCT-TACTCTTC 270
Query 355 ATTCCTTATTTCACTGGTTTACTGCTTCTCGGTGTCATTAAAGGTATCGTTTTATGCCCG 414
|||||||||||| ||| || ||| |||| ||| |||| |||||||||||||| |||||
Sbjct 271 CTTCCTTATTTCATTGGATTGCTGTTTCTGGGTTTCATCAAAGGTATCGTTTTGTGCCCA 330
Query 415 CTTATATGCCTTACTGTGGCTATTGGAAACTCTGCAATCAT-CTTAGGCCTTTTACCAGT 473
|| |||| || |||| |||| || ||||| || |||| || | | ||| |||| ||
Sbjct 331 CTCGTATGTCTCGTTGTGACTATAGGCAACTCCGCGGTCATACTGA-GTCTTCTACCCGT 389
Query 474 ACAC-GCGATTTGGACTCTATATTCGATAGCGAGTGCTAAAC-AGTTAGGACCAATCCTG 531
||| || |||||||| | ||||| || | |||||| |||| || ||||||||||| ||
Sbjct 390 TCACATCG-TTTGGACTTTCTATTCAATCGTGAGTGCCAAACAAG-TAGGACCAATCTTG 447
Query 532 AAGATCTTTCTGTGTTTATG-CGTTCCT-CTTGGTGTCATTCTCTGGCTTGTGGTTAGTA 589
||||||||||| || ||||| | ||||| | || |||||||||||| | | ||| |||
Sbjct 448 AAGATCTTTCTATGCTTATGTC-TTCCTGC-TGCCATCATTCTCTGGCCTATTGTTGGTA 505
Query 590 TCTTAGGAAGTGTTCTT-GGAGGAGCTATT-TATGGATTTCTTTCT--CCAATATTT-GC 644
| ||||| |||||| || ||||||||| || ||||| ||| ||||| ||||| ||| ||
Sbjct 506 TTTTAGGGAGTGTT-TTGGGAGGAGCT-TTATATGG-TTT-TTTCTCCCCAAT-TTTCGC 560
Query 645 TACTTTCGATGCTGTTGGTGAAGGGAAGTCTAATCC-GTTTTTCCATTGCTTTTATGATG 703
||||| ||||||||||||||||| ||| || | || |||||||||||||||||||||||
Sbjct 561 CACTTTTGATGCTGTTGGTGAAGGCAAGCCTTA-CCAGTTTTTCCATTGCTTTTATGATG 619
Query 704 GAACTTGGAGCACTGTTCAAGGCAGTTTCACCGTTGTTTGTGATTTTAAAGATGTTTGCT 763
||||||||||||| | ||| |||| ||||||||||| | |||||||||||||||||||
Sbjct 620 GAACTTGGAGCACCATCCAACGCAGCTTCACCGTTGTCCGGGATTTTAAAGATGTTTGCT 679
Query 764 TTCACTCCTACTTTTCTTTTATGGATGATCTTCGAACATCTACTGC--GAACCGTCAC-T 820
||||||| ||||| || | |||||||| ||| |||| |||| | | || || |
Sbjct 680 TTCACTCATACTTCTCACTCATGGATGAGCTTA-AACAAAG-CTGCCCGGATCG-CAAAT 736
Query 821 ATTATGAAATAAGGTTACTTCAAATTCCAGGTGCTGTGATTGTTGCGGTTCTCGGAATTC 880
|||||||||||||| |||||||| ||||||| ||| || | ||| | |||||||| |||
Sbjct 737 ATTATGAAATAAGGCTACTTCAACTTCCAGGGGCTTTGGTAGTTTCAGTTCTCGGGGTTC 796
Query 881 TTGTTGATTTCCCAGTGATTTCACTCT-TAGC-ATTGTGTAAAAGCCCGTACATGTTGTT 938
|||||||||| || ||||| ||||| | |||| || || |||||||| |||||||||||
Sbjct 797 TTGTTGATTTACCGGTGATCTCACT-TGTAGCCATA-TGCAAAAGCCCTTACATGTTGTT 854
Query 939 CAAAGGGTGGCACCGTTTGTTTCATGATCTCATTGGACGTGAAGGTCCTTTCTTGGAAAC 998
|||||| |||||||||||||||||||| || |||||||| |||||||| |||||||| ||
Sbjct 855 CAAAGGATGGCACCGTTTGTTTCATGACCTAATTGGACGGGAAGGTCCATTCTTGGAGAC 914
Query 999 AATGTGTGTCCCAATCGCTGGCCTTGTGATCTTACTCTGGCCTTTAGCTGTTGTTGGAGC 1058
|||||||||||| || || ||||| | |||||||||||||||||| ||||| || ||
Sbjct 915 AATGTGTGTCCCCATTGCAGGCCTCGCGATCTTACTCTGGCCTTTGGCTGTCACGGGCGC 974
Query 1059 AGTT-TTAGGATCCGTGGTCTCTAGTGTCTTCCTTGGTGCTTATGGC-GGTGTAGTCTCA 1116
||| || ||||| || ||||| ||| |||||||||||||||||| | || |||||||||
Sbjct 975 GGTTATT-GGATCAGTTGTCTCGAGTATCTTCCTTGGTGCTTATG-CAGGAGTAGTCTCA 1032
Query 1117 TATCAGGAGTCATCGTTCTT-CT-TCGGTCTCTGCTATGTT-GTTGCTTCTGTTTCTATT 1173
|||||||| |||||||| || || | || ||||||| | | ||||| ||||| || |||
Sbjct 1033 TATCAGGAATCATCGTT-TTACTAT-GGACTCTGCT-TCATAGTTGCATCTGTGTCCATT 1089
Query 1174 TACGATGAGTATAGCAACGATGTTCTTGA-TATGCCTGAAGGTTCTTGCTTTCCCAGGCC 1232
||||| |||||||||| |||| | ||||| | |||||||||| ||||| ||||| |||||
Sbjct 1090 TACGACGAGTATAGCACCGATATACTTGACT-TGCCTGAAGGATCTTGTTTTCCAAGGCC 1148
Query 1233 -AATATATCGAAGAAACGAAGAGGG-CGCTAGTACGGCATTTTCTGGTGGTCTTTCAAGA 1290
|| |||||||||| | ||||||| | | | || | ||||||||| | | |||||
Sbjct 1149 GAA-ATATCGAAGAGAGGAAGAGGAAC-CAAC-AC--CTTTTTCTGGTCCTATACCAAGA 1203
Query 1291 CC-GAACTCCT-TCAAGA-CAAC-TCCATCAA-GAG-G-AGGATCAAACAAAGGCCCAAT 1343
| ||| | |||||| | | || ||| | ||| | ||||||| || || ||| ||
Sbjct 1204 TTAGG-CTC-TGTCAAGAACG-CGTC-ATCGATGAGAGCAGGATCAGTCAGAGTCCCTAT 1259
Query 1344 GATTGACCTGAAACCGCTTGATCTTTTGGA-G-GCTCTATTTGTGGAATGTAGGCGGCAC 1401
|||||| | || || || ||||| ||| | | ||||| || ||||||||||| |
Sbjct 1260 GATTGATATTAAGCCTCTCGATCTGTTGAATGAGCTCT-TT-GTGGAATGTAGAAGATTT 1317
Query 1402 GGAGAGATTATGGTAACGAAAGGGATT-ATAAATTCAAAAGACATTGAAGAAGCTAAATC 1460
||||| ||| ||| || ||||| | | |||||||| ||||| || |||||||| | |||
Sbjct 1318 GGAGAAATTTTGGCGACAAAAGG-ACTGATAAATTCGAAAGATATCGAAGAAGCGAGATC 1376
Query 1461 TAGCAAAGGCAGTCAAGTGATCAGCTTTGGCTTACCTGCTTATTCTCTTCTTCACGAGCT 1520
||| |||||||| |||||||||||| |||| ||||| |||||||| |||||| | ||| |
Sbjct 1377 TAGTAAAGGCAGCCAAGTGATCAGCGTTGGTTTACCGGCTTATTCACTTCTTTATGAGAT 1436
Query 1521 TTTACGCTCTATCAAATCTAACTCCACCGGTTTATTACTCGGTGACGGTGTAACGGAGAT 1580
| ||||||| ||||| | || | |||| || ||||| ||||||||||||| || ||
Sbjct 1437 TCTACGCTCCGTCAAAGCCAATTGTGCCGGCTTGTTACTAAGTGACGGTGTAACTGAAAT 1496
Query 1581 AACTACCA-GAAACCGCCCAAAAGATGCGT-TT-TTTGATTGGTTTCTGAATCCGTTTTT 1637
|||| || ||| ||| |||||||| ||| || ||||||||||||||| ||||||| ||
Sbjct 1497 AACTGTCATGAA-CCGACCAAAAGA--CGTCTTCTTTGATTGGTTTCTGCATCCGTTGTT 1553
Query 1638 GATCCTTAAAG-ACCAGATCGAA-GCTGCAAACCTATCCGAGGAAGAAGAAGAGTATCTT 1695
||| || |||| | || || ||| ||| ||||| | |||||||||||||||||||| ||
Sbjct 1554 GATACT-AAAGGAGCAAAT-GAAAGCTACAAACTTGTCCGAGGAAGAAGAAGAGTACCTC 1611
Query 1696 GGTAA-ATTGGTATTACTCTTTGGAGATTCAGAGAGACTTAAA-AGCTCCATTGTTGAAT 1753
|| || ||| || || || ||||||||| ||||||| || ||| ||||| | || | |
Sbjct 1612 GG-AAGATTAGTCTTGCTATTTGGAGATCCAGAGAGGCT-AAAGAGCTCGAATGCC-ATT 1668
Query 1754 -CTGAATCTCCTCCTCTAACTGAAC-TCAGAAA-AGCCGAACTTGATGCCTTTGCTCGCA 1810
| | ||||||||||| || || | | | ||| ||||||||| ||||||||||||||||
Sbjct 1669 TCCGCGTCTCCTCCTCTTACCGAGCGT-A-AAAGAGCCGAACTCGATGCCTTTGCTCGCA 1726
Query 1811 GGCTTCAAGGATTAACCAAATCAGTATCAAGATATCCAACATT-CAGAAGACATTTTGTG 1869
|| | ||||| |||| ||| | |||||||||||||||||||| | | |||||||||||
Sbjct 1727 GGATGCAAGGGCTAACGAAAACGGTATCAAGATATCCAACATTTC-GTCGACATTTTGTG 1785
Query 1870 GAACTAGTCAAGAAACTATC 1889
| | |||| |||||||||||
Sbjct 1786 GCATTAGTGAAGAAACTATC 1805
> Ahg947653 jgi|Araly1|947653|scaffold_703882.1
Length=355
Score = 137 bits (74), Expect = 3e-31
Identities = 86/92 (93%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 667 GGGAAGTCTAATCCGTTTTTCCATTGCTTTTATGATGGAACTTGGAGCACTGTTCAAGGC 726
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 216 GGGAAGTCTAATCCGCTTTTCCACTGCTTTTATGATGGAACATGGAGCACTGTTCAAGGC 275
Query 727 AGTTTCACCGTTGTTTGTGATTTTAAAGATGT 758
|||||||||| ||| || ||||||||||||||
Sbjct 276 AGTTTCACCGCTGTCTGCGATTTTAAAGATGT 307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83950899980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5