BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40645.1

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg891613 jgi|Araly1|891613|Al_scaffold_0007_3599                    374    4e-103
  Ahg493918 jgi|Araly1|493918|fgenesh2_kg.7__3351__AT5G40640.1         185    2e-46 


> Ahg891613 jgi|Araly1|891613|Al_scaffold_0007_3599
Length=225

 Score =  374 bits (202),  Expect = 4e-103
 Identities = 218/225 (97%), Gaps = 3/225 (1%)
 Strand=Plus/Plus

Query  90   ATGGCATCGAATAATCAACAACGACAACAACAAGATCGACCATTACCAAAATTTGGAGAA  149
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCATCGAATAATCAACAACGTCAACAACAAGATCGACCATTACCAAAATTTGGAGAA  60

Query  150  TGGGACGTGAACGATCCAGCATCAGCCGAAGGATTTACGGTTATATTCGCTAAAGCTCGA  209
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGGGATGTGAACGATCCAGCATCAGCCGAAGGATTTACGGTTATATTCGCTAAAGCTCGA  120

Query  210  GACGACAAAAAGACAAACGCAAGTGGTCGTGCCGCCTCACAACGCCGTGACAATAACAA-  268
            ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| 
Sbjct  121  GACGACAAAAAGACAAACGCAAGTGGTCGTGCCACCTCTCAACGCCGTGACAATAACAAT  180

Query  269  A--TCTCAAGATGAACCTACGAAGAAACGGTTCTGCTGTTTCTGA  311
            |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAATCTCAAGATGAACCTACGAAGAAACGGTTCTGCTGTTTCTGA  225


> Ahg493918 jgi|Araly1|493918|fgenesh2_kg.7__3351__AT5G40640.1
Length=2184

 Score =  185 bits (100),  Expect = 2e-46
 Identities = 126/138 (91%), Gaps = 4/138 (3%)
 Strand=Plus/Minus

Query  299   CTGCTGTTTCTGAGAAACAACACATCATCAAGCAAAAGCTGAATGTAAAACATTTGTTAG  358
             |||||||||||||| ||| | ||||||||||||| ||||||| || ||||||||||||||
Sbjct  2184  CTGCTGTTTCTGAGGAAC-A-ACATCATCAAGCACAAGCTGAGTGAAAAACATTTGTTAG  2127

Query  359   ATAAAT-GAAACAGTTTCATATTCACTTGGAATCTGTATAAATTTATCATTACAGAGCTA  417
             | | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2126  A-ACATCAAAACAGTTTCATATTCACTTGGAATCTGTATAAATTTATCATTACAGAGCTA  2068

Query  418   AAAGCAGACGAAGTTTCG  435
             ||| |||||| |||||||
Sbjct  2067  AAAACAGACGCAGTTTCG  2050



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15796413846


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5