BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40650.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493917 jgi|Araly1|493917|fgenesh2_kg.7__3350__AT5G40650.1 1744 0.0
Ahg936489 jgi|Araly1|936489|scaffold_500680.1 959 0.0
> Ahg493917 jgi|Araly1|493917|fgenesh2_kg.7__3350__AT5G40650.1
Length=1029
Score = 1744 bits (944), Expect = 0.0
Identities = 1003/1031 (97%), Gaps = 5/1031 (0%)
Strand=Plus/Plus
Query 12 ACTATTaaaaaaaCAATT-TCATTTCATTTGCTCTCTTCTCCGAG-AAAATGGCGTTTGG 69
|||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 1 ACTATTAAAAAAAC-ATTCTCATTTCATTTGCTCTCTTCTCCGAGAAAAATGACGTTTGG 59
Query 70 TTTGATCGGAAGAGTTGTTGGAACCAAATCATCACGATTATCCACGGCGGCGCGATTGAT 129
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 60 TTTGATCGGAAGAGTTGTTGGAACCAAATCGTCACGGTTATCCACGGCGGCGCGATTGAT 119
Query 130 TCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAGCTTCAACCGGCGGCGG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAGCTTCAACCGGCGGCGG 179
Query 190 AGGAGCGAGTCTGAAGACGTTTCAGATCTATCGATGGAATCCAGATAATCCTGGAAAGCC 249
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGAGCGAGTTTGAAGACGTTTCAGATCTATCGATGGAATCCAGATAATCCTGGAAAGCC 239
Query 250 AGAGCTTCAAGATTACAAAATCGATCTCAAGGATTGTGGTCCAATGGTTCTAGATGCTTT 309
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAGCTTCAAGATTACCAAATCGATCTCAAGGATTGTGGTCCAATGGTTCTAGATGCTTT 299
Query 310 GATTAAGATTAAGAACGAGATGGATCCATCGCTCACTTTCCGTCGCTCTTGCCGTGAAGG 369
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 GATTAAGATTAAGAACGAGATGGATCCATCTCTCACTTTCCGTCGCTCTTGCCGTGAAGG 359
Query 370 TATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAATGGTCTTGCTTGTTTAACGAA 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAATGGTCTTGCTTGTTTAACGAA 419
Query 430 GATTGAATCTGGATCTAAAGAGACGACGATTACGCCGTTGCCGCATATGTTTGTGATTAA 489
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GATTGAATCTGGATCTAAAGAGACGACGATTACGCCGTTGCCTCATATGTTTGTGATTAA 479
Query 490 GGATTTGGTTGTGGATATGACGAATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGATTTGGTTGTGGATATGACGAATTTTTATAATCAGTATAAGAGTATTGAGCCGTGGTT 539
Query 550 GAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGATTTTACAGAGTAAGAAAGATAG 609
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 540 GAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGATTTTGCAGAGTAAGAAGGATAG 599
Query 610 AGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTGCTTGTTGTAGCACGTCTTGCCC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 AGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTGCTTGTTGTAGCACGTCTTGTCC 659
Query 670 TAGCTATTGGTGGAACCCTGAGTCTTATCTTGGTCCAGCTGCTTTGCTTCATGCCAACAG 729
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TAGCTATTGGTGGAACCCTGAGTCTTATCTTGGCCCAGCTGCTTTGCTTCATGCCAACAG 719
Query 730 GTGGATAAGTGATAGCCGAGATGAGTACACTAAGGAAAGACTTGAAGCCATTGACGATGA 789
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GTGGATAAGCGATAGCCGAGATGAGTACACTAAGGAAAGACTTGAAGCCATTGACGATGA 779
Query 790 GTTCAAACTGTATCGATGCCACACAATTCTGAACTGTGCTCGTGCCTGTCCAAAGGGATT 849
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 GTTCAAGCTGTATCGATGCCACACAATTCTGAACTGTGCTCGTGCATGTCCAAAGGGATT 839
Query 850 GAACCCAGGGAAACAGATCACACACATCAAGCAGCTTCAGAAATCTGGTTGAACAACAAA 909
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 GAACCCAGGGAAACAGATTACACACATCAAGCAGCTTCAGAAATCTGGTTGAATAACAAA 899
Query 910 TGAATCAGGCAGTACCTAATGGATTTTTGATTCTAATAATCTGCAAGAAACTCCAATTTT 969
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 900 TCAATCAGGCAGTACCTAATGGATTTTTGATGCTAATAATTTGCAAGAAACTCCAATTTT 959
Query 970 GGATTCATTCTTGTATT-GCTGTCACAACTATCAGAATTAGATTATTTTGTGGTATATCT 1028
||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 960 GGATTCATTCTTGTATTTGCTGTTACAACTATGAGAAT-AGATTATTTTGTGGTATATCT 1018
Query 1029 TGATGAAtttt 1039
||||||| |||
Sbjct 1019 TGATGAAATTT 1029
> Ahg936489 jgi|Araly1|936489|scaffold_500680.1
Length=881
Score = 959 bits (519), Expect = 0.0
Identities = 737/842 (88%), Gaps = 15/842 (2%)
Strand=Plus/Plus
Query 56 AAAATGGCGTTTGGTTTGATCGGAAGAGTT-GTTGGAACCAAATCATC-ACGATTATCCA 113
|||||||||| |||||||||||||||| || |||||||| ||| | || | |||| |||
Sbjct 19 AAAATGGCGTCTGGTTTGATCGGAAGA-TTGGTTGGAACGAAACCGTCGA-AATTAGCCA 76
Query 114 CGGCGGCGCGATTGATTCCGGCGCGATGGACATCAACAGGATCAGAAGCACAATCGAAAG 173
|||||| ||| || ||||||||| ||||||| || || ||| | || || || | ||||
Sbjct 77 CGGCGGTGCGGTTAATTCCGGCGAGATGGACCTCTACGGGAGCGGAGGCGGAAACAAAAG 136
Query 174 CTTCAACCGGCGGC-G--GAGGAGCG-AGTCTGAAGACGTTTCAGATCTATCGATGGAAT 229
|||| | |||||| | ||||| || | | ||||||| |||||||||||||||||||||
Sbjct 137 CTTCGTCTGGCGGCGGAAGAGGATCGAACT-TGAAGACTTTTCAGATCTATCGATGGAAT 195
Query 230 CCAGATAATCCTGGAAAGCCAGAGCTTCAAGATTACAAAATCGATCTCAAGGATTGTGGT 289
||||||||||| || |||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 196 CCAGATAATCCAGGGAAGCCAGAGCTTAAAGATTACCAGGTCGATCTCAAGGATTGTGGT 255
Query 290 CCAATGGTTCTAGATGCTTTGATTAAGATTAAGAACGAGATGGATCCATCGCTCACTTTC 349
||||||||| ||||||||||||||||||| || ||||| |||||||||||||| || |||
Sbjct 256 CCAATGGTTTTAGATGCTTTGATTAAGATCAAAAACGAAATGGATCCATCGCTTACCTTC 315
Query 350 CGTCGCTCTTGCCGTGAAGGTATTTGTGGTTCGTGTGCTATGAACATTGATGGATGTAAT 409
||| | || ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 316 CGTAGATCGTGCCGTGAAGGGATCTGTGGTTCATGTGCTATGAACATTGATGGATGTAAT 375
Query 410 GGTCTTGCTTGTTTAACGAAGATTGAATCTGGATCTAAAGAG-ACGACGATTACGCCGTT 468
|| ||||||||||||||||||||| || |||| | | | | ||||||||||| |||||
Sbjct 376 GGACTTGCTTGTTTAACGAAGATTCAAGATGGAGC-ATCGGGGACGACGATTACACCGTT 434
Query 469 GCCGCATATGTTTGTGATTAAGGAT-TTGGTTGTGGATATGACGAATTTTTATAATCAGT 527
||| ||||||||||||||||||||| ||| | || |||||||| ||||||||||||||||
Sbjct 435 GCCTCATATGTTTGTGATTAAGGATCTTG-TGGTTGATATGACTAATTTTTATAATCAGT 493
Query 528 ATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGAATCCAGCATCTGTTCCTGGGAAAGAGA 587
||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 494 ATAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCATCTGTTCCTGCTAAGGAGA 553
Query 588 TTTTACAGAGTAAGAAAGATAGAGCTAAGCTTGATGGAATGTATGAATGTATTCTCTGTG 647
|||| ||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 554 TTTTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAGTGTATTCTTTGTG 613
Query 648 CTTGTTGTAGCACGTCTTGCCCTAGCTATTGGTGGAACCCTGAGTCTTATCTTGGTCCAG 707
||||||||||||| ||||| ||||| || |||||||| ||||||||||| ||||||||||
Sbjct 614 CTTGTTGTAGCACATCTTGTCCTAGTTACTGGTGGAATCCTGAGTCTTACCTTGGTCCAG 673
Query 708 CTGCTTTGCTTCATGCCAACAGGTGGATAAGTGATAGCCGAGATGAGTACACTAAGGAAA 767
|||||||||| ||||| || ||||||||||||||||| || |||||||||||||||||||
Sbjct 674 CTGCTTTGCTACATGCTAATAGGTGGATAAGTGATAGTCGTGATGAGTACACTAAGGAAA 733
Query 768 GACTTGAAGCCATTGACGATGAGTTCAAACTGTATCGATGCCACACAATTCT-GAACTGT 826
|||||||||| |||| || |||||||| || || || ||||| ||||| || |||||||
Sbjct 734 GACTTGAAGCTGTTGATGACGAGTTCAAGCTTTACCGTTGCCATACAAT-CTTGAACTGT 792
Query 827 GCTCGTGCCTGTCCAAAGGGATTGAACCCAGGGAAACAGATCACACACATCAAGCAGCTT 886
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||
Sbjct 793 GCTCGTGCCTGTCCAAAGGGTTTGAACCCAGGAAAACAGATCGCACACATCAAGCAACTT 852
Query 887 CA 888
||
Sbjct 853 CA 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5