BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40660.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493916 jgi|Araly1|493916|fgenesh2_kg.7__3349__AT5G40660.1 1626 0.0
> Ahg493916 jgi|Araly1|493916|fgenesh2_kg.7__3349__AT5G40660.1
Length=1250
Score = 1626 bits (880), Expect = 0.0
Identities = 1119/1228 (91%), Gaps = 41/1228 (3%)
Strand=Plus/Plus
Query 72 TTGCGACGTCGTTTAGGCTTGGATCTGACGATCTATGTGATCTAAAACCCTAAGCAAGGA 131
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 44 TTGCGACGTCGTTTAGGCTTGGATCTGACGATCTGTG-GATCTAAAACCCTAAGCAAGGA 102
Query 132 ---G-GT----CCCCATTTTCGTCACCGGAGAGGGAGGATTAATGGCGGCGATGTTAATC 183
| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 GGTGAGTGAGGTCCCATTTTCGTCACCGGAGAGGGAGGATTAATGGCGGCGATGTTAATC 162
Query 184 GGAAGAGCTTTTAAGTCAGCGAGAAACTCTAATCTTGCTATTCGTGCTAGATCCTTATGT 243
|||||||||||||| ||||| ||||||| ||| || || |||||||| |||||||||||
Sbjct 163 GGAAGAGCTTTTAAATCAGCTAGAAACTTTAACCTGGCCGTTCGTGCTCGATCCTTATGT 222
Query 244 ACGACATCTGCCGCTCGTCAACCCGATTCCGATACTCAGCCATCGGAATCTTCG---TCG 300
||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 223 ACGACGTCTGTCGCTCGTCAACCCGATTCCGATACTCAGCCATCGGAATCTTCGTCTTCG 282
Query 301 TCG------TTCACATTCGAGAAGGAAAATGAGAAACCCATCTTAGTGAAAGCTCCGAAC 354
||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 283 TCGTCTTCATTCACATTCGAGAAGGGAAATGAGAAACCTATCTTAGTGAAAGCTCCGAAC 342
Query 355 TCTCGCCGGAAAAACGAATCGGATTCAGTGACGATGCCGACGTCTTTCATGACTGGTTCG 414
|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 343 ACTCGCCGGAATAATGAATCGGATTCAGTGACGATGCCGACGTCTTTTATGACTGGTTCG 402
Query 415 ATCGTAGGGAAGAGGTTTTACAAGAAAGTGACGACTAGAGAAGCTGATGATGGAAATGGA 474
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 403 ATTGTTGGGAAGAGGTTTTACAAGAAAGTGACGACGAGAGAAGCTGATGATGGAAATGGA 462
Query 475 TGGACTGTGATGCTTGATTATAGAACCCTTAAAACCCCTTCGAAAAGACCTCTCAAGCTT 534
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 463 TGGACTGTGATGCTCGATTATAGAACCCTTAAAACCCCTTCCAAAAGACCTCTCAAGCTT 522
Query 535 CGTTCTTTGGCACTTGCTAAGGCCATTGCTGCTGAGTGGGAGTATCAGCTAACAGAAGGG 594
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 523 CGTTCTTTGGCACTTGCTAAGGCCATTGCAGCTGAATGGGAGTATCAGCTAACAGAAGGG 582
Query 595 ATCAGACCATTCACAATGCCGCTTATGAGACTAGCATGTACTGCACTTGAAAGAGTTCCT 654
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 583 ATCAGACCGTTCACTATGCCGCTAATGAGACTAGCATGTACTGCACTTGAAAGAGTTCCT 642
Query 655 CTTACGCGTTCAAAGATCATAGAACATTTATCGAGAAAGATACATCAAGATCTCGTCTTT 714
|| ||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||
Sbjct 643 CTCACGCGTTCAAAGATCATCGAACATCTATCGAGAAAGTTACATCAAGATCTTGTCTTT 702
Query 715 TTCCGAGCACCTGAAGATAATGATCTAACTAGTGACGTCCATGATATTCAGGTAGAGAGT 774
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 703 TTCCGAGCGCCTGAAGATAATGATCTAACTAGTGACGTCCATGAAATTCAGGTAGAGAGG 762
Query 775 ATTGATCCTCTACTTGAGTGGATAGAGTCAGAGTTTCGGGTCAAACCGAAA-GTGTATTC 833
||||||||||||||||||||| |||| ||||||||| |||| ||||| ||| |||||||
Sbjct 763 ATTGATCCTCTACTTGAGTGGGTAGAATCAGAGTTTGGGGTAAAACC-AAATTTGTATTC 821
Query 834 TAGCATCTTCGGGGGTAAACAAGACGACAAGCTAGTGAAAGCAGTAGAAGAACTGCTCAA 893
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 822 TAGTATTTTCGGGGGTAAACAAGACGACAAGCTAGTGAAAGCAGTAGAAGATCTGCTCAA 881
Query 894 GAAAACGAATGATGGTGAACTCGCAAGCATTGATGCACTCCAAGCATCAGCTCACTCTAT 953
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 882 GAAGACAAATGATGGTGAACTTGCAAGCATTGATGCACTCCAAGCATCAGCTCACTCGAT 941
Query 954 AGTAATCGCCCTCGGTATCTTCTGTGGGAAACTCCAGATCGATGATGCAATCAAATTGAT 1013
||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 942 AGTAATCGCCCTCTGCATCTTCTGTGGGAAGCTCCAGATCGATGATGCAATTAAATTGAT 1001
Query 1014 TAGACTTGAAGAAGATTTACAGGTGGACAAATGGGGACTAGTCGAAGGCGGGCATGACAT 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1002 TAGACTTGAAGAAGATTTACAGGTGGACAAATGGGGACTAGTCGAAGGCGGGCACGACAT 1061
Query 1074 TGATGTTGCTGATCTCAAAGTTCAGATCTCATCAGCTACAGTGTTTCTTGCTCTATCCCG 1133
|||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1062 TGATATTGCTGATCTAAAAGTTCAGATATCATCAGCTACAGTGTTTCTTGCTCTATCCCG 1121
Query 1134 TGAAAACTGATCATTAGTCTCTCATTT-TCCTCAACACATTAAAAAACAAGCTTATCTGT 1192
|||||||||||||| |||||||| ||| | ||||||||||||||||| || | |
Sbjct 1122 TGAAAACTGATCATCAGTCTCTCTTTTGTGCTCAACACATTAAAAAAAAA----A---GA 1174
Query 1193 TTGTAGATTAG-TTATTTACTTTCCAAGTTGCAAGAGGTATGTGTAAACATTTTTCTCTC 1251
| | || |||| | ||| || | || ||||| |||||||||||||||||||
Sbjct 1175 ----ACA--AGCTTATCTG-TTT----GTAG-AATAGGTAAGTGTAAACATTTTTCTCTC 1222
Query 1252 TTATTCACCAATAAAGCAAAACTCGAAA 1279
|||||||||||||||||||||||||||
Sbjct 1223 CTATTCACCAATAAAGCAAAACTCGAAA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5