BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40680.1
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355911 jgi|Araly1|355911|fgenesh1_pg.C_scaffold_7003084 1801 0.0
> Ahg355911 jgi|Araly1|355911|fgenesh1_pg.C_scaffold_7003084
Length=1317
Score = 1801 bits (975), Expect = 0.0
Identities = 1163/1253 (93%), Gaps = 16/1253 (1%)
Strand=Plus/Plus
Query 7 TTGATGCTACaaaaaaaTCAAGCTCGTGGAACTAGAGCAAGCCTGAGCCAATTTGAGC-C 65
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |
Sbjct 70 TTGATGCTACAAAAAAATCAAGCTCGTGGAACTAGAGCAAGCTTGAACCAATTTGA-CAC 128
Query 66 AAGAAAGCTTCTGATTGCTAGCACTAAACCCACCATCCCTGATCTGAATGCTGAACCTTG 125
|||||||| |||||||| | |||||||||||||| |||||||||||||||| ||| |||
Sbjct 129 AAGAAAGCGTCTGATTGTTGGCACTAAACCCACCCTCCCTGATCTGAATGCAAAACTTTG 188
Query 126 TTCCGACTC-G--GAAGAAGAAGAAACAGTGGAGAATCTCACAAGTCTTGCACCTCAAGA 182
||||||||| | ||||||||||||||| | ||||||||||||||||| |||| ||||
Sbjct 189 TTCCGACTCGGAAGAAGAAGAAGAAACAATTAAGAATCTCACAAGTCTTACACCACAAGC 248
Query 183 TGCACACAATGGTCTTCCTAAGCTTATGTTCGACCTTGAGGTCGAGATCTTTTCCCGTCT 242
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 249 TGCACATTATGGTCTTCCTAAGCTTTTGTTCGACCTTGAGGTCGAGATCTTTGCCCGTGT 308
Query 243 TTCATGTTTTCAATATTGGAAAC-TAAATCTTCTCAACAAGCAGTTTTCGCAACTGCTAC 301
||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||||||
Sbjct 309 TTCATGTTTTCAATATTGGAAACTTAACT-TTCTCAACAAGCAGTTCTCGCAACTGCTAC 367
Query 302 -AAAGTCGTGAGATTTTTAAAGTGAGACGAGAACGTGGACTTGTGCAACCATATGTGCTT 360
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 368 GAAA-TCGTGAGATTTTTAAAGTGAGACGAGAACGCGGACTTGTGCAACCATATGTGCTT 426
Query 361 ATGTTTTCGAGCGGTGAAACTTGTTGGGTAATGTTTGATAAAGGTTTCAAGAATTTCCGA 420
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 427 ATGTTTTGGAGCGGTGAAACTTGTTGGGCAATGTTTGATAAAGGTTTCAAGAATTTCCGA 486
Query 421 CAACTTCCAGAAATTCCTTCTGACTTTTGTTTCTTTTATGGAGATAAGGAAACGATTACT 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 487 CAACTTCCAGAAATTCCTTCTGACTTTTGTTTCTTTTCTGGAGATAAGGAAACGATTACT 546
Query 481 GCGGGTACGCATTTGATAGTCATCGGGAGAGAGGA-GAAGCGTATTGTGGTGTGGCGATA 539
|||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||
Sbjct 547 GCGGGTACGCATTTGATAGTCATCGGAAGAGAGAAAGA-GCGTATTGTGGTGTGGCGATA 605
Query 540 CGAACTAGAGGTAAACAAGTGGATCAACGATACTGAAATGATCACACCGCGGGTAATGTA 599
|| |||||| |||| ||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct 606 TGAGCTAGAGATAAATAAGTGGATCAAAGATAATGAAATGATCACACCGCGGGTCATGTA 665
Query 600 TGCTTCCGCAAGCCGTGGGACCGATGCATTTTTCGCTGGAGGAATCAAGACAAGCGAAAA 659
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 666 TGCTTCCGCAAGCCGTGGGACCGATGCATTTTTCGCTGGAGGAATTAAGACAGGCGAAAA 725
Query 660 CGGGGGTC-CTGATGTTGTGAACGTTGCTGAAAGATACAACTCCGATACAAAAACGTGGA 718
||| || || ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 726 -GGGAGTTTCTAATGTTGTGAACATTGCTGAAAGATACAATTCCGATACAAAAACGTGGA 784
Query 719 AAGCGATGAAAGCAATGCACAAGCGAAGAAAATTTAGCTCGGGATGTTTCTTGCGGGGTA 778
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 785 AAGCGATGAAAGCAATGCACAAGCGAAGAAAATTCAGCTCGGGATGTTTCTTGCGTGGTA 844
Query 779 AGTTTTACGCTCTTGGTGGTCGAGATGAGAATGATGTGTACCTTACTTGTGGAGAAAGTT 838
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 845 AGTTTTACGCTCTTGGTGGTCGGGATGAGAATGATGTATATCTTACTTGTGGAGAAAGTT 904
Query 839 ACGATGAGTTAACAGATTCATGGAAGTTGATACCAGACATGCTCAAAGGCATGACTTTCA 898
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 905 ACGATGAATTAACAGATTCATGGAAGTTGATACCAAACATGCTCAAAGGCATGACTTTCA 964
Query 899 TGAATCCCCAATCCCCTCCACTTATTGCTGTGGTCAAGGACAACCTCTACTTGCTGGAAA 958
||||||||||||| || || || || || ||||||||||||||||||||||||||||| |
Sbjct 965 TGAATCCCCAATCTCCGCCTCTCATCGCGGTGGTCAAGGACAACCTCTACTTGCTGGAGA 1024
Query 959 CATGGTTGAACGAGCTTTGGGTTTATGATATAAACGCAAACGTTTGGAAAAATCTTGGAG 1018
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1025 CATGGTTGAACGAGCTTTGGGTTTATGATATAAACGCAAACGCATGGAAAAGTCTTGGAG 1084
Query 1019 TTGTGCCTGTGAAAGCAAATGCTGCTTTAGGTTGGGGAGTTGCATTTAAGTCAGTTGGAG 1078
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTGTACCTGTGAAAGCAAATGCAGCTTTAGGTTGGGGAGTTGCATTTAAGTCAGTTGGAG 1144
Query 1079 ATAGGATTTTGGTGATTGGAGCTTCAGTTACTAAATCGTGGGATAACAA-A-A-TGTCAG 1135
||||| ||||||||||||||||||||| |||| |||||||||||||||| | | ||||||
Sbjct 1145 ATAGGCTTTTGGTGATTGGAGCTTCAGCTACTCAATCGTGGGATAACAACACAATGTCAG 1204
Query 1136 TTTACACATGTTGCCCATTTCCAAAAGTGGAAAAGATTACTTGGGAGGAGACTAGCTGCG 1195
||||||||||| |||||| |||||||||||||||||||| ||||||||||||| | ||||
Sbjct 1205 TTTACACATGTCGCCCATCTCCAAAAGTGGAAAAGATTATTTGGGAGGAGACTCGTTGCG 1264
Query 1196 ATTGTGTTCAGCTCGGCCATTTTATCCGTAACTGTTGTGTGATGCTTGCTTAA 1248
|| | ||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1265 ATGGCGTTAAACTCAGCCATTTTATCCGTAACTGTTGTGTGATGCTTGCTTAA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5