BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40690.1
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493913 jgi|Araly1|493913|fgenesh2_kg.7__3346__AT5G40690.1 1351 0.0
> Ahg493913 jgi|Araly1|493913|fgenesh2_kg.7__3346__AT5G40690.1
Length=884
Score = 1351 bits (731), Expect = 0.0
Identities = 835/884 (94%), Gaps = 12/884 (1%)
Strand=Plus/Plus
Query 1 ACATCTTTCTTCTTCCttttttttGTGTGTGGTTAAGGTCTCATCGATCAACGGATAAGA 60
|||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||| |||||
Sbjct 1 ACATCTTTCTTCTTCCTTTTTTTTTTGTGTAGTTCAGGTCTCATTGATCAACGGCTAAGA 60
Query 61 TGAAGCGTGAAGGCAAACAACACGGTATGGTGAGGACTTACCGGATTCTGCCTCCGTCGC 120
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 61 TGAAGCGAGAAGGCAAACAACACGGTATGGTCAGAACTTACCGGATTCTGCCTCCGTCGC 120
Query 121 TGAATCCAAGGCCGGAATCGAAGTTGGTCAACCCTTTGACTTCACGGCCAACCGCTGGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAATCCAAGGCCGGAATCGAAGTTGGTCAACCCTTTGACTTCACGGCCAACCGCTGGAT 180
Query 181 TATTTACCAAAGTGACATCAAAGCCGACCAATCACTCGAAATTCACCGGGAAATGTGGTC 240
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TGTTTACCAAAGTGACATCAAAGCCGACCAATCACTCGAAATTCACCGGAAAATGTGGTC 240
Query 241 AAGCAAGGTGCCTTGACTGCCATATGCACCCGGTCACCAAATCTAAAGCCAAGACTAAAG 300
|||||||||||||||| || |||||||| ||| |||||||||| ||||||||||||||||
Sbjct 241 AAGCAAGGTGCCTTGATTGTCATATGCATCCGATCACCAAATCCAAAGCCAAGACTAAAG 300
Query 301 GCTCTTCAAAGGTGAGAACAAATGATGTCACCTATAAGATGCTGACTTGGCAGGTCGCTG 360
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct 301 GCTCTTCTAAGGTGAGATCAAATGATGTCACCTACAAGATGCTGACTTGGCAGGTTGCTG 360
Query 361 CCGGTGGGCCTAGACCCGGTTTGAAGCTTTCCGGGTTCTCGGCTACCGGAATACTtgatc 420
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 CGGGTGGGCCTAGACCCGGTTTGAAGCTTTCCGGGTTCTCGGCTACCGGGATACTTGATC 420
Query 421 ttatgtctgatgattatggttatgatcatgattatgattatgatgaagaa-a--atgaag 477
||||||||||||||||||||||||||||||||||||| ||||||||||| | | ||||
Sbjct 421 TTATGTCTGATGATTATGGTTATGATCATGATTATGAAGATGATGAAGAAGATGAAGAAG 480
Query 478 aagaagaaaaCAGAGGGAGTGTTGTAGAAGAAGTTGTGAATATACAGAGTAGTGATGATG 537
||||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||
Sbjct 481 AAGAAGAAAACAGAGCAAGTGTTGTTGAAGAAATTGTGAAAATACAGAGTAGTGATGATG 540
Query 538 GTGGTGAAACAGAAGAAGAAGGGT--C---A--A--atgatgatgatgatgatacagatg 588
|||||||||||||||||| |||| | | | ||||||||||||||||||| ||||
Sbjct 541 ATGGTGAAACAGAAGAAGATGGGTCACATGATGATGATGATGATGATGATGATACTGATG 600
Query 589 atgatggaaggatgagtttttgtgatgtggggatgatgatgatgatggatcatgtggaag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGATGGAAGGATGAGTTTTTGTGATGTGGGGATGATGATGATGATGGATCATGTGGAAG 660
Query 649 aatatgatgaaggatggTATTTGGTTGAAGAAATGATGACTTAACTGATCTCTCTGATTA 708
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 661 AATATGATGAAGGATGGTATTTGGTTGAAGAAATGATGACTTAATTGATCTGGCTGATTA 720
Query 709 TCCCCCAATAATTGTCTTTCCTTTTGCTTTTGTAAATTTTATCATTTTTAATAACTTGGG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCCCCCAATAATTGTCTTTCCTTTTGCTTTTGTAAATTTTATCATTTTTAATAACTTGGG 780
Query 769 GGAATGAATGATTATTTCTATGTAAATGTGATTTGATTCTTAAATCAAAAACTATGATTT 828
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAATGATTGATTATATCTATGTAAATGTGATTTGATTCTTAAATCAAAAACTATGATTT 840
Query 829 ATAATTGTAATTTATGTAAAGTTGAAACCTTTTCTCAACAACTC 872
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAATTGTAATTTATGTAAAGTTGAAACCTTTTCTCAACAACTC 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32328233616
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5