BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40700.2
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493912 jgi|Araly1|493912|fgenesh2_kg.7__3345__AT5G40700.2 1334 0.0
Ahg484524 jgi|Araly1|484524|fgenesh2_kg.5__516__AT3G27350.1 327 8e-89
Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2 93.5 3e-18
Ahg484367 jgi|Araly1|484367|fgenesh2_kg.5__359__AT3G26050.1 80.5 2e-14
> Ahg493912 jgi|Araly1|493912|fgenesh2_kg.7__3345__AT5G40700.2
Length=1023
Score = 1334 bits (722), Expect = 0.0
Identities = 945/1046 (90%), Gaps = 41/1046 (4%)
Strand=Plus/Plus
Query 1 CTTCGATTTTTATTTATTTCCTTTTGAGATTCCAACGAAGAAGTTCTCGATTTTGAGGTT 60
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 1 CTTCGATTTTTATTTATTTCATTTTGAGATTCCAACGAAGAAATTTTCGATTTTGAGGTT 60
Query 61 TTGTGGCCAATGGCTGAATCTGCTGTTCTGTTTCATTCCTATTCGTTCGCAGCTCCTCCT 120
| || | |||||| ||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 61 TAGTTG-CAATGGGTGAATCTGCTGTTCTATTTCATTCCTATTCGTTCTCTCCTCCTCCT 119
Query 121 TCTCGTAATGAATCTCATGAGGATAATACGATGCATGCGCTTAGTCAATCAGTTTCATTT 180
|||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||
Sbjct 120 TCTCGTAATGAATCTCTTGAGGATAATCCGATTCATGCGCTTAGTCAATCAGTTTCATTT 179
Query 181 GGTAGATTCATGACAGAGAATCTTGAATGGGGGAAATGGTCAAGTTTTTCGCATAAGAAG 240
||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 GGTAGGTTCGTGACAGAGAATCTTGAATGGGGAAAATGGTCAAGTTTTTCGCATAAGAAG 239
Query 241 TATGTCGATGAAGCTGAGAAGTTCTCTCAGCCTGGATCTGTTGCTCAGAAGAAAGCTTTC 300
|||||||||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 240 TATGTCGATGAAGCCGAGAAATTCTCTCAGTCTGAATCTGTTGCTCAGAAGAAAGCTTTC 299
Query 301 TTTGAAGCTCATTACAAGAAAATAGCTGAAGCAAAGAAAGCAAAAGCTTCAGATCAATCA 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 300 TTTGAAGCTCATTACAAGAAAATAGCTGAAGCCAAGAAAGCAAAAGCTTCAGATGAATCA 359
Query 361 TCTGATTCTGA-C-CCTA-AACAAGAACCAGAAAGTGTTGCGGTGTTGCTTAACACTTTG 417
||||| || | | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TCTGACACTAAGCAAGAAGAACAAGAACCAGAAAGTGTTGCGGTGCTGCTTAACACTTTG 419
Query 418 GAGACATTGACTAAGGATGAGGTTAAGGAAGAAGAGGGTGATGAAACTGAGTTAGTCTTG 477
||||||||||||||||||||||||||||||||||| | | || | ||| | | ||
Sbjct 420 GAGACATTGACTAAGGATGAGGTTAAGGAAGAAGA--GAG-TG--A-TGA---A-AC-TG 468
Query 478 AGTAGTAGTGAAGAGTTGGTGTTGAGTATTGAGAAAGATGATGAGCCAGTAAGAACAAA- 536
||| |||| | ||| | | | || | || | ||||| | ||||| |||
Sbjct 469 AGT--TAGTCATGAG-T--CG-T-AG---T------GA--A-GAGCCCGGAAGAA-AAAG 508
Query 537 TGTTGCGGTTTTGGAACAAGAAGA---TGATTTGCAGGTTATTCATGATGATAAAGAGAA 593
|||||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 509 TGTTGCGGTTTTGGAACAAGAAGACGGTGGTTTGCAGGTTGTTCATGATGATAAAGAGAA 568
Query 594 AGATAATCACTCTGAGGATGgagagttggtgaagaagagttgtttcgttggagagaaaga 653
||| |||||||| ||||||||||||||| ||||||||| |||||||| |||||| |||||
Sbjct 569 AGAGAATCACTCAGAGGATGGAGAGTTGTTGAAGAAGAATTGTTTCGATGGAGAAAAAGA 628
Query 654 agaagagagaaAATCCGTAACCAAGAACTCATCGGTGGTTAGATTGTCTATAGAGAAATC 713
||||||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 629 AGAAGAGAGAAGATCCGTTACCAACAACTCATCGGTGGTTAGATTGTCTATGGAGAAATC 688
Query 714 AGCAACTTCTGAAACTCCGGACAAAGCAATGGAGCTTGTTTTCTCACTGAAAATAAGTGG 773
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 689 AGCAACTTCTGAAACTCGGGACAATGCAATGGAGCTTGTTTTCTCACTGAAAATAAGTGG 748
Query 774 AAAACCGATAACTCATAGTTCGTTGACGAAAAGCGAAAAACCAGTTCGTCCTAGATTCGG 833
|||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 749 AAAACCGATAACTCATAGTTCGTTGAAGAAAAACGAAAAACCAGTTCGTCCCAGATTCGG 808
Query 834 TTTCTTGAGCTGTTTGATGGGAAACACTAAAACTCAAGATCAAAAGCTGACTATAAAGAA 893
||||||||||||||||||||||||||||||||||||||||||||| | | |||| |||||
Sbjct 809 TTTCTTGAGCTGTTTGATGGGAAACACTAAAACTCAAGATCAAAACCCGGCTATGAAGAA 868
Query 894 GCAGAGAAAGACGAGTAAGAAACCATTTCTATGTCTTTGCTTCAAACCCGAGATGGCTGG 953
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 869 GCAGAGAAAGACGAGTAAGAAACCATTTCTATGTCTTTGCTTCAAACCTGAGATGGCTGG 928
Query 954 GGAAACAGAAGCAGG-AAGACAAAGGTAGAACACCAAAACACAGAAGAGGAATCTCTGAA 1012
|||||||||||| || ||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 929 GGAAACAGAAGC-GGCAAGACAAAGGTAGTACACCAAAACACCGAAGAGGAATCTCTGAA 987
Query 1013 AACACTTGCAAGTAGAAAGATTGATC 1038
||||||||||||||||||||||||||
Sbjct 988 AACACTTGCAAGTAGAAAGATTGATC 1013
> Ahg484524 jgi|Araly1|484524|fgenesh2_kg.5__516__AT3G27350.1
Length=1311
Score = 327 bits (177), Expect = 8e-89
Identities = 244/276 (88%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 69 AATGGCTGAATCTGCTGTTCTGTTTCATTCCTATTCGTTCGCAGCTCCTCCTT-CTCGTA 127
||||| ||||||||| |||||| ||||||| ||||| |||||||||||| || ||||||
Sbjct 142 AATGGGTGAATCTGCAGTTCTGGTTCATTCTTATTCTTTCGCAGCTCCT-ATTACTCGTA 200
Query 128 ATGAATCTCATGAGGATAATACGATGCATGCGCTT-AGTCAATCAGTTTCATTTGGTAGA 186
| || ||||||||||| |||||||| |||||| || ||||||||| |||||||||| | |
Sbjct 201 ACGATTCTCATGAGGAAAATACGATTCATGCG-TTAAGTCAATCAATTTCATTTGGGAAA 259
Query 187 TTCATGACAGAGAATCTTGAATGGGGGAAATGGTCAAGTTTTTCGCATAAGAAGTATGTC 246
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 260 TTCATGACAGAGAATCTAGAATGGGGGAAATGGTCAAGCTTTTCACATAAGAAGTATGTT 319
Query 247 GATGAAGCTGAGAAGTTCTCTCAG-CCTGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGA 305
|| ||||| ||||| | ||| | | |||||||||||||| || |||||||||||||||||
Sbjct 320 GAAGAAGCAGAGAAATACTCAC-GTCCTGGATCTGTTGCACAAAAGAAAGCTTTCTTTGA 378
Query 306 AGCTCATTACAAGAAAATAGCTGAAGCAAAGAAAGC 341
|||||||||||||| |||||||||||| ||||||||
Sbjct 379 AGCTCATTACAAGAGAATAGCTGAAGCTAAGAAAGC 414
> Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2
Length=1437
Score = 93.5 bits (50), Expect = 3e-18
Identities = 119/151 (79%), Gaps = 9/151 (6%)
Strand=Plus/Plus
Query 184 AGATTCATGACAGAGAATCTTGAATGGGGGAAATGGTCAAG-TTTTTCGCATA-AGAA-- 239
||||||||| | ||||| ||||| |||| |||||||| | ||| || || | | ||
Sbjct 43 AGATTCATGTCGGAGAAACTTGACTGGGAAAAATGGTC-TGCTTTCTC-CACACACAACC 100
Query 240 -GTATGTCGATGAAGCTGAGAAG-TTCTCTCAGCCTGGATCTGTTGCTCAGAAGAAAGCT 297
||||| | ||||| ||| || | ||| |||| |||||||| |||||||||||||||
Sbjct 101 CTTATGTGGCGGAAGCAGAG-AGATACTCAAAGCCCGGATCTGTCGCTCAGAAGAAAGCT 159
Query 298 TTCTTTGAAGCTCATTACAAGAAAATAGCTG 328
|||||||||||||| ||||||||| | ||||
Sbjct 160 TTCTTTGAAGCTCACTACAAGAAACTCGCTG 190
> Ahg484367 jgi|Araly1|484367|fgenesh2_kg.5__359__AT3G26050.1
Length=1947
Score = 80.5 bits (43), Expect = 2e-14
Identities = 64/74 (86%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 255 TGAGAAGTTCT-CTCAGCCTGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCATT 313
||||| ||| | || | ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 303 TGAGAGGTT-TACTAAACCTGGTTCTGTGGCTCAGAAGAAAGCTTTCTTTGAAGCTCATT 361
Query 314 ACAAGAAAATAGCT 327
|||||| | ||||
Sbjct 362 TCAAGAACAGAGCT 375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5