BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40720.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493908 jgi|Araly1|493908|fgenesh2_kg.7__3341__AT5G40720.1 2863 0.0
Ahg484521 jgi|Araly1|484521|fgenesh2_kg.5__513__AT3G27330.1 931 0.0
> Ahg493908 jgi|Araly1|493908|fgenesh2_kg.7__3341__AT5G40720.1
Length=1976
Score = 2863 bits (1550), Expect = 0.0
Identities = 1823/1954 (93%), Gaps = 22/1954 (1%)
Strand=Plus/Plus
Query 9 TATTCTATTCCTTCAGAAAATTTTTATCGTCCTAAAATCTTCGTAGCCTGCAACAAAGA- 67
|||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1 TATTCTATTCTTTCAGAAAATTTTTATCGACCTAAAATCTTCGTAGCCTGCGACAAAGAG 60
Query 68 A-AGACTAAGAAAGAACTAAAATATTTTGCTTCGTCTAATTACTTTTTTCCTTTGGATTT 126
| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 61 AGAGACTAAGAAAGAACTAAAATATTTTGCTTCATCTAATTACTTTTTT--TTTGGATTT 118
Query 127 AATTCTCAGCCATCGCCGCCGTTTTCGGCGGTGTAAAAAATGAAGAACCGTAGGAAACGC 186
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 119 AATTCTCAGCCATCGCCGCCGTTTTCGGCGGTTTAAAAGATGAAGAACCGTAGGAAACGC 178
Query 187 GGTGGTTTAAGCAGTGTCGACGTCGTTGTTTCATGGAGAAGAtttttccgatttgtttct 246
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 179 GGTGGTTTAAGCGGTGGCGACGTCGTTGTTTCATGGAGAAGATTTTTCCGACTTGTTTCT 238
Query 247 ttgttcgtcttctccttcgttctcttctctgctttcttcatcttcttAGGCAAAATTCGA 306
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 239 TTGTTCGTCTTCTCCTTCGTTCTCTTCTCTGCTTTGTTCATCTTCTTCGGGAAAATTCGA 298
Query 307 CCGGTGGTGCGGTCTTCGGTCAACGCAGTTCTTCGTGGTTCTGTACCGGTGGTTAAGGTG 366
|||||||||||| | |||||||||||||| || |||||||||||||||| ||||||||||
Sbjct 299 CCGGTGGTGCGGACATCGGTCAACGCAGTGCTCCGTGGTTCTGTACCGGCGGTTAAGGTG 358
Query 367 ATCACGATCCATGAAGCAGTTGAGTTTCCCGACCAAACATTGATTTTCCTAAAATACCCT 426
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 GTGACGATCCATGAAGCAGTTGAGTTTCCCGACCAAACAATGATTTTCCTAAAATACCCT 418
Query 427 CCATCTTCTCGGTTTTTTACGAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAACGAT 486
|||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCATATTCTCGGTTATTTACAAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAACGAT 478
Query 487 TCGTCTAAACTTTTTAAAGAGCTTCCTTTCGCGGTGGAAACCGACGACTATGGCCGTCAG 546
||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 479 TCGTCTAAACTATTTAAAGAGATTCCGTTCGCGGTGGAAACCGACGACTATGGCCGTCAG 538
Query 547 ATCGTACGGTGTTCCGCCGTGCCTCGTGGCAATACTGTATCCCTCGCCGTTTCGAGATGG 606
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCGTACGGTGTTCAGCCGTTCCACGTGGCAATACTGTATCCCTCGCCGTTTCGAGATGG 598
Query 607 AGGGTTGATGATTATAATCTCCAAGTAGGGCTCACACACCGATGGGATTGGCTGGTGTAC 666
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ACGGTTGATAATAATAATCTCCAAGTAGGGCTCACACACCGATGGGATTGGCTGGTGTAC 658
Query 667 GACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCTTAATCTACGG 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCTTAATCTACGG 718
Query 727 CCAGGAAAGGTTGCTGACGCGTCGAGATATGAGTGTGTATACGGTTGGGATTTCACAAAG 786
||||||||||||||||||| ||||||||||||||| || |||||||||||||| ||||||
Sbjct 719 CCAGGAAAGGTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGTTGGGATTTTACAAAG 778
Query 787 CCCAAACTTTTGCTTAGAGCACAAGCTATCTCTGCGGCCCAAGAGATCGTACGTTGTAAA 846
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 779 CCCAAACTTTTGCTTAGAGCACAAGTTATCTCTGCGGCCCAAGAGATCGTACGATGCAAA 838
Query 847 ACGCCACTGACAGTATTAGACGGCCCAAGAAGGGCCCAATCTCAACCGGTGAAAGTTTCT 906
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 ACGCCACTAACAGTATTAGACGGCCCAAGAAAGGCCCAATCTCAACCGGTGAAAGTTTCT 898
Query 907 GTGAGGATCAAAGGAAGTGGGATGCTTCCTTCTGTAGCTC-ATCCAATTAAACGTCCGGG 965
|||||||| ||||||||| |||||||||||||||| || | | |||||||||||||||||
Sbjct 899 GTGAGGATTAAAGGAAGTAGGATGCTTCCTTCTGTTGC-CAACCCAATTAAACGTCCGGG 957
Query 966 TCGGATCAAAGTCTCGAAAACGTTTGAAACGTGTGTTTGCACCATGACGCGAAACGCAGC 1025
|||| |||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 958 TCGGGTCAAAGACACGAAAACGTTTGAGACGTGTGTTTGTACCATGACGCGAAACGCAGC 1017
Query 1026 AAACGTTTT-ACGAGAATGGGTGATGTATCACGCCGGAATCGGCGTTCAACGGTGGTTCA 1084
||||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1018 AAACGTTTTGA-GAGAATGGGTAATGTACCACGCCGGAATCGGCGTTCAACGGTGGTTCA 1076
Query 1085 TCTACGACAACAACAGCGACGACGACATTGTTTCCGAGATCAAGAATCTAGAAAATCGCG 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCTACGACAACAACAGCGACGACGACATTGTTTCCGAGATCAAGAATCTAGAAAATCGCG 1136
Query 1145 GTTACAACATCTCGAGACATTTTTGGCCGTGGATCAAAACTCAGGAAGCAGGATTCGCAA 1204
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1137 GTTACAACATCTCGAGACATTTTTGGCCGTGGATAAAAACTCAAGAAGCAGGATTCGCCA 1196
Query 1205 ATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTCGCGTTTATCGACGTCGACGAGT 1264
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 ATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTTGCGTTTATCGACGTCGACGAGT 1256
Query 1265 TCTTCTACATCCCCTCTGGTCAAACTCT-AACCAACGTAATCAGAAATCACACGACAACA 1323
||||||||||| | ||||||||||| || |||| ||||||||||||||||||| | | ||
Sbjct 1257 TCTTCTACATCTCTTCTGGTCAAAC-CTTAACCGACGTAATCAGAAATCACAC-A-A-CA 1312
Query 1324 CCATCATCGTCCGGCGAGATCGGTGAAATTCGAACGCCGTGTCACAGTTTTGGACCGTCG 1383
|| |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1313 ---TC---GTCCGGCGAGATTGGTGAAATTCGAACGCCGTGTCACAGTTTCGGACCGTCG 1366
Query 1384 GGACTTAGAGATCCACCGCGCAGCGGAGTCACAGCGGCGTACACATGTCGTATGGCGTTA 1443
|||||||| ||||||||| || | |||||||| ||||| || || |||||||||||||||
Sbjct 1367 GGACTTAGCGATCCACCGGGCGGTGGAGTCACGGCGGCTTATACGTGTCGTATGGCGTTA 1426
Query 1444 CCGGAGAGACATAAAAGCATAATTAGACCGGAATCGCTAAACGCAACGCTAATAAACGTC 1503
||||||||||| || |||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1427 CCGGAGAGACACAAGAGCATAATCAGACCGGAATCGCTAAACGCGACGCTGATAAACGTG 1486
Query 1504 GTTCATCATTTTCACTTAAAAGAAGAATTCGCGTTTGTTGACGTGGATAAGAGTACGATG 1563
|| |||||||||||||||||||||| ||||||||| | ||||||||||||| ||| ||||
Sbjct 1487 GTGCATCATTTTCACTTAAAAGAAGGATTCGCGTTCGCTGACGTGGATAAGGGTATGATG 1546
Query 1564 GTAATTAACCATTATAAATATCAGGTTTGGGATATTTTTAAGGAGAAGTTTAAAAGGAGA 1623
||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1547 GTAATTAACCACTATAAATATCAGGTTTGGGAGATATTTAAAGAGAAGTTTAAAAGGAGA 1606
Query 1624 GTAGCGACTTATGTGGCGGATTGGCAAAACGAAGAGAATGTCGGGTCGAAAGATCGGGCA 1683
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GTGGCGACGTACGTGGCGGATTGGCAAAACGAAGAGAATGTCGGGTCGAAAGATCGGGCC 1666
Query 1684 CCTGGTTTAGGGACCCGACCCGTTGAACCAACTGATTGGGCTGAGAGATTCTGTGAGGTG 1743
|| || ||||||||||||||||||||||| |||||||||||||||| || ||||| |||
Sbjct 1667 CCCGGATTAGGGACCCGACCCGTTGAACCGTCTGATTGGGCTGAGAGGTTTTGTGAAGTG 1726
Query 1744 AGCGATATTGGGCTTAGGGATTGGGTGTTGGAGAAATTCAGTGACCGTAAAACGCAGCGT 1803
|| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 1727 AGAGATATTGGGCTTAGGGATTGGGTGTTGGATAATTTCAGGGACCGTAAAACGCAGCGT 1786
Query 1804 TTAGTATGGGAGAGAGAAGCAAGGAGAGTGGAAGATGAAGTTATAGTTCAAATGGGCTCG 1863
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1787 TTAGTATGGGAGAGAGAAGCGAGGAGAGTGGAAGATGAAGTTATAGCTCAAATGGGCTCG 1846
Query 1864 TGGGCCGATAAAAGAGTTGGTCGGAAGAGGAAAAAGCAATTAAAAGCCCAATAGGTTTTG 1923
||||| |||||||| ||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1847 TGGGCTGATAAAAGGGTTGGTCGGAAGAGGAAAAAGCAGTTGAAAGCCCAATAGATTTTG 1906
Query 1924 TTTTTGTTTTCTTAATTT---CCACGGTGAAAAA 1954
||||| ||||| |||||| |||||||||||||
Sbjct 1907 TTTTTTTTTTCCTAATTTTTTCCACGGTGAAAAA 1940
Score = 63.9 bits (34), Expect = 4e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1976 ATTTGTAAATATTGATTGCTTCCCGGGGaaaaaaaaa 2012
|||||||||||||||||||||||||||| ||||||||
Sbjct 1940 ATTTGTAAATATTGATTGCTTCCCGGGGGAAAAAAAA 1976
> Ahg484521 jgi|Araly1|484521|fgenesh2_kg.5__513__AT3G27330.1
Length=2881
Score = 931 bits (504), Expect = 0.0
Identities = 1167/1476 (79%), Gaps = 89/1476 (6%)
Strand=Plus/Plus
Query 370 ACGATCCATGAAGCAGTTG-AGTTTCCCGACCAAACATTGATTTTCCTAAAATACCCTCC 428
||||| | |||||| | || | || || || ||||| ||| ||||||||||||||||| |
Sbjct 356 ACGATTCGTGAAGC-GGTGAAATTACCTGAACAAACGTTGGTTTTCCTAAAATACCCT-C 413
Query 429 A-TCTTC-TCGGTTTTTTACGAAAGAGGACCTCTTTTGCGTTTTCTCCGACGTAAACGAT 486
| || || |||||| ||||| ||||| || ||| ||||||||| || | || | |
Sbjct 414 AGTC-TCTTCGGTTATTTACAAAAGACGATCTCATTTGCGTTTACT-C--CG-----G-T 463
Query 487 TCGTCTAAACTTTTTAAAGAGCT-TCCTTTCGCGGTGGAAACCGACGAC-TA-T-GGCCG 542
||||| || || |||| | | ||| || | || ||| || ||| | | || |
Sbjct 464 TCGTCGAAGCTACGGAAAGTG-TATCC-GACG-GCTGTTAACAGA-GACAAATTCGGAGG 519
Query 543 TCAGATCGTACGGTGTTCC-GCCGTGCCTCGTGGCAATACTGTATCCCTCGCCGTTTCGA 601
||||||||||||||| ||| | ||| |||||| | || |||| || || |||||||
Sbjct 520 TCAGATCGTACGGTG-TCCTGAAACGCCACGTGGCTACACCATATCGCTTGCTGTTTCGA 578
Query 602 GATGGAGGGTTGATGATTATAATCTCCAAG-TAGGGCTC-ACACACCGATGGGATTGGCT 659
|||||| | | ||| || |||||| | | |||| | || ||||| |||||||||||
Sbjct 579 GATGGA-CGACG--GATGATCATCTCCCGGCT-GGGC-CAACTCACCGGTGGGATTGGCT 633
Query 660 GGTGTACGACGCCGTGATCGACGACGACAATTCCACGGTGGTTTTTGTCAAGGGGCTTAA 719
| |||||||||||||||||| |||| || || ||||||||||||||||||||||||||
Sbjct 634 TTTTTACGACGCCGTGATCGACTACGATAACTCTACGGTGGTTTTTGTCAAGGGGCTTAA 693
Query 720 TCTACGGCCAGGAAAG-GTTGCTGACGCGTCGAGATATGAGTGTGTATACGGTTGGGATT 778
|||||||||||| ||| |||||||||| ||||||||||||||| || ||||| |||||||
Sbjct 694 TCTACGGCCAGG-AAGAGTTGCTGACGTGTCGAGATATGAGTGCGTGTACGGCTGGGATT 752
Query 779 TCAC-AAAGCCCAAACTTTTGCTTAGAGCACAAGCTATCTCTGCGGCCCAAGAGATCGTA 837
|| | ||| | || | || ||||| || | | |||||| ||||| || ||||| |||
Sbjct 753 TCGCGAAA-CATAATCGGTTAATTAGATCAGATGTTATCTCAGCGGCTCAGGAGATAGTA 811
Query 838 CGTTGTAAAACGCCACTGA-CAGTATTAGACGGCCCAAGAAG-GGCCCAATCTCAACCGG 895
|| ||| ||| || | | | || ||||||||||||| ||| ||||| | || |
Sbjct 812 CGGTGTCGAACACC-GTTAGCTGTGTTAGACGGCCCAA-AAGCGGCCC---GTGGGCCTG 866
Query 896 TGAAAGTTTCTGTGAGGA-TCAA--AGGAAGTGGGATGCTTCCTTCTGTAGCTCATCCAA 952
| ||||| || || || | | || ||||| || |||||||||||| | ||||| ||
Sbjct 867 TTAAAGTCTCGGTTAGAATTAAAGGAGGAACCGGTATGCTTCCTTCTATCGCTCAACC-- 924
Query 953 TTAAACGTCCGGGTCGGATCAA--AGTCTCG--A-AAA-CGTTTGAAACGTGTGTTTGCA 1006
|| ||| || || || | | || | ||| ||||| ||| ||| |||||||
Sbjct 925 -----GGTTCGGATC--ATTAACCCGCCGCGAAAGAAACCGTTTCAAATGTGCGTTTGCA 977
Query 1007 CCATGACGCGAAACGCAGCAAAC-GTTTT-ACGAGAATGGGTGATGTATCACGCCGGAAT 1064
| ||||||||||||||||| | ||||| | |||| |||||||||||||||||||||||
Sbjct 978 CTATGACGCGAAACGCAGC-CGCGGTTTTGA-GAGAGTGGGTGATGTATCACGCCGGAAT 1035
Query 1065 CGGCGTTCAACGGTGGTTCATCTACGACAACAACAGCGACGACGACATTGTTTCCGAGAT 1124
||||||||||||||||||||| ||||| ||||||||||| |||||||| | |||||||
Sbjct 1036 CGGCGTTCAACGGTGGTTCATATACGATAACAACAGCGATGACGACATAATCGCCGAGAT 1095
Query 1125 CAAGAATCTAGAAA-ATCGCGGTTACAACATCTCGAGACATTTTTGGCCGTGGATCAAAA 1183
| ||||||| |||| | ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1096 CGAGAATCTCGAAAGA-CGCGGTTACAATATCTCGAGACATTTCTGGCCGTGGATTAAAA 1154
Query 1184 CTCAGGAAGCAGGATTCGCAAATTGCGCGATTCGAGCAAAGAGCGATTGCGATTGGGTCG 1243
|||| ||||| |||||| | ||||| |||||||| ||||||||||||||||||||| |||
Sbjct 1155 CTCAAGAAGCTGGATTCTCTAATTGTGCGATTCGTGCAAAGAGCGATTGCGATTGGATCG 1214
Query 1244 CGTTTATCGACGTCGACGAGTTCTTCTACATCCCCTCTGGTCAAACTCTAACCAACGTAA 1303
||||||| ||||||||||||||||||||||||||||| ||| || | ||||| ||
Sbjct 1215 CGTTTATTGACGTCGACGAGTTCTTCTACATCCCCTCCGGTGAATCCCTAACTTCCG--- 1271
Query 1304 TCAGAAATCACACGACAACACCATCATCGTCCGGCGAGATCGGTGAAATTCGAACGCCGT 1363
||| ||| | | | ||| | | | | |||| ||| |||||||||||||||||||
Sbjct 1272 TCATAAA--A-A--ATTACA-C-T-AGC-TCCGATTCGATTGGTGAAATTCGAACGCCGT 1322
Query 1364 GTCACAGTTTTGGACCGTCGGGACTTAGAGATC-C-ACCGCGCAG-CGGAGTCACAGCGG 1420
| || ||||||||||||||||| || |||||| | ||| || || |||||||| ||||
Sbjct 1323 GCCATAGTTTTGGACCGTCGGG--TTTGAGATCTCGACCACG-AGATGGAGTCACCGCGG 1379
Query 1421 CG-TACACATGTCGTATGGCGTTACCGGAGAGACATAAAAGCATAATTAGACCGGAATCG 1479
| ||||| || ||| ||| ||||||||||||||| || |||||||| | |||||| ||
Sbjct 1380 -GATACACTTGCCGTGTGGTGTTACCGGAGAGACACAAGAGCATAATCCGGCCGGAAGCG 1438
Query 1480 CTAAACGCAACGCTAATAAACGTCGTTCATCATTTTCACTTAAAAGAAGAATTCGCGTTT 1539
| ||||| ||||| || ||||| ||||| ||||||||| | | ||| | |||| |||||
Sbjct 1439 ATGAACGCGACGCTGATTAACGTGGTTCACCATTTTCACCTCAGAGATGGATTCACGTTT 1498
Query 1540 GTTGACGTGGATAA-GAGTACGATGGTAATTAACCATTATAAATATCAGGTTTGGGATAT 1598
| |||| |||| || || || ||||||||||||||||| |||||||| |||||||| |
Sbjct 1499 GCTGACATGGACAAGGA-TATAATGGTAATTAACCATTACAAATATCAAGTTTGGGAGGT 1557
Query 1599 TTTTAAGGAGAAGTTTAAAAGGAGAGTAGCGACTTATGTGGCGGATTGGCAAAACGAAGA 1658
||| || ||||||||| | ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1558 TTTCAAAGAGAAGTTTTATCGGAGAGTCGCGACTTATGTAGCGGATTGGCAAAACGAAGA 1617
Query 1659 GAATGTCGGGTCGAAAGATCGGGCACCTGGTTTAGGGACCCGACCCGTTGAACCAACTGA 1718
|||||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1618 GAATGTCGGGTCGAGAGATCGGGCACCCGGTTTAGGAACCCGACCCGTTGAACCATCTGA 1677
Query 1719 TTGGGCTGAGAGATTCTGTGAGGTGAGCGATATTGGGCTTAGGGATTGGGTGTTGGAGAA 1778
|||||||||||||||||||||||||| |||| ||||||| ||| |||||| |||||
Sbjct 1678 TTGGGCTGAGAGATTCTGTGAGGTGAATGATACGGGGCTTAAAGATCAGGTGTTTGAGAA 1737
Query 1779 ATTCAGTGACCGTAAAACGCAGCGTTTAGTATGGGA 1814
|| | ||| |||||||||||||||| | |||||
Sbjct 1738 GTTTAAAGACAATAAAACGCAGCGTTTAATGTGGGA 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5