BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40730.1

Length=446
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493907 jgi|Araly1|493907|fgenesh2_kg.7__3340__AT5G40730.1         571    1e-162


> Ahg493907 jgi|Araly1|493907|fgenesh2_kg.7__3340__AT5G40730.1
Length=415

 Score =  571 bits (309),  Expect = 1e-162
 Identities = 365/391 (93%), Gaps = 8/391 (2%)
 Strand=Plus/Plus

Query  49   caaaaaaaactcaaaaCGTTTTTGAAGATAATGATGATGATGACGAAGATGTTTGTTCAG  108
            |||||||||   ||||||||||||| |  || ||||||||||| ||||||||||||||||
Sbjct  31   CAAAAAAAA--AAAAACGTTTTTGACG--AA-GATGATGATGAAGAAGATGTTTGTTCAG  85

Query  109  ATCGCTGTGGTTTGTCTATTGGCGACGATGGCCGTTGTGTCCGCCCACGAGGGTCACCAC  168
            ||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct  86   ATCGCTGTGGTTTGTCTATTGGCGACGATCGCCGTTGTGTCCGCTCATGAAGGTCACCAC  145

Query  169  CACCATGCTCCGGCTCCAGCACCAGGACCCGCATCTAGCTCAACCGTTGTTTCGGCCACC  228
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  146  CACCATGCTCCGGCTCCAGCACCAGGACCCGCATCTAGCTCAGCCGTTGTTTCGGCCACC  205

Query  229  AATATGTTCACCGTCTTGGCTATTGCTGCCGTGGCTCTCGTCGTTGGTTCCAACCACTAA  288
            ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct  206  AATATGTTCACCGTCTTGGCTTTTGCCGCCGTGGCTCTCGTCGTTGGTTCCAACCATTAA  265

Query  289  GTTGGTTATTACATTCGTCGTTTTGTTTCGGTTTCTATGAAATTGTTCTCTTGACTTTTA  348
            ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct  266  GTTGGTTATTACATTCGTCTTTTTGTTTCAGTTTCTATGAA-TTGTTCTCTTGACTTTTA  324

Query  349  ATATATTTT-GAATTTTTCTCATTTGTTTT-TAACTCTCTCTATGTTGATCTGATTTCTT  406
            |||| |||| |||  ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  325  ATATTTTTTTGAAAATTTCTCATTTGTTTTATAACTCTCTCCATGTTGATCTGATTTCTT  384

Query  407  GAATAAAATAAAAGTTTATTGAACGTGTGTT  437
            |||||||||||||||||||||||||| ||||
Sbjct  385  GAATAAAATAAAAGTTTATTGAACGTTTGTT  415


 Score = 71.3 bits (38),  Expect = 6e-12
 Identities = 41/42 (98%), Gaps = 1/42 (2%)
 Strand=Plus/Plus

Query  1   ACAAACAACACAAATCTTTTTCTCATTCATCaaaagaaaaaa  42
           ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1   ACAAACAACACAAATCTTTTTCTCATTCATCAAAA-AAAAAA  41



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16101658558


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5