BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40750.1
Length=894
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493905 jgi|Araly1|493905|fgenesh2_kg.7__3338__AT5G40750.1 512 2e-144
Ahg891601 jgi|Araly1|891601|Al_scaffold_0007_3587 335 4e-91
Ahg947691 jgi|Araly1|947691|scaffold_703920.1 231 5e-60
> Ahg493905 jgi|Araly1|493905|fgenesh2_kg.7__3338__AT5G40750.1
Length=780
Score = 512 bits (277), Expect = 2e-144
Identities = 396/450 (88%), Gaps = 21/450 (5%)
Strand=Plus/Plus
Query 1 ATGGCAGTTTATTTGGACGATGGT-GC-CGTAGCT-GAATCATTGCGACTCCACAAGGCA 57
||||| || ||||||||||||||| | || | || | ||||||||||||||||||||||
Sbjct 1 ATGGCTGTCTATTTGGACGATGGTACCACG-A-CTCG-ATCATTGCGACTCCACAAGGCA 57
Query 58 CCTATATTAGAAAGATT-GACTATAAAACTCGGTCCACATTGTCCTGTTAATGCTAACGT 116
|||||||||||||| || || |||| ||||||||||||||||||||||| ||||||||||
Sbjct 58 CCTATATTAGAAAGTTTGGA-TATAGAACTCGGTCCACATTGTCCTGTTGATGCTAACGT 116
Query 117 GGGAAAGTGGATTGGAAATGCGGTTGATCGCAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176
|||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 GGGAAAGTGGATAGCAAATGCGGTTGATCGTAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176
Query 177 ATGCCTCCCA-CCTCTCAAACGTCTTCTCCTTGTCTTTGTGGTATACAAAGATGATGATT 235
|||||||||| || ||||||||||||| |||||||| |||||| ||||||||||| ||||
Sbjct 177 ATGCCTCCCATCC-CTCAAACGTCTTCACCTTGTCTCTGTGGTGTACAAAGATGAAGATT 235
Query 236 ATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCGAATATTTGTATGTGTTGCAACATG 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 236 CTGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCAAATATTTGTATGTGTTGCGGCATG 295
Query 296 AGCAAGACAATGTGACAAAGTTTAGTGTAAAAGTTCCATCTTTAGAGACTTTAATATATT 355
| |||||||| ||||| || |||||||||||||| |||||||||||||| |||| ||||
Sbjct 296 ACCAAGACAACGTGACCAATTTTAGTGTAAAAGTGCCATCTTTAGAGACCTTAACGTATT 355
Query 356 TTTATCG-GAAAGCAAAAGTACTTGACGA-G--GA---A---GATATTGGAAGATCTTTG 405
| || | |||| |||||||| | | ||| | || | ||||||||| ||||||||
Sbjct 356 GTAAT-GTGAAACCAAAAGTAGTCGGCGAAGAAGATGTACAAGATATTGGAGGATCTTTG 414
Query 406 GCCATAGATTCTAAGATTTTAAAGAAATTC 435
|||||||||||||||||||||||| |||||
Sbjct 415 GCCATAGATTCTAAGATTTTAAAGGAATTC 444
Score = 375 bits (203), Expect = 2e-103
Identities = 234/249 (94%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 590 AACCGAATGATATTCCTCCATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAAAGAAT 649
||||||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||
Sbjct 509 AACCGAATGATGTTCCACTATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAACGAAT 568
Query 650 ATGGAGCG-ACAAGCGAAGAGAAACAAGTGTTAAGTTACATTCTTGCCAACTCCAAATGT 708
|||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 569 ATGGAG-GAACAAGCGAAGAGAAACATGTATTAAGTTACATTCTTGCCAACTCCAAATGT 627
Query 709 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATG 768
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 628 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAAAAGATAATG 687
Query 769 AAGGAGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAA 828
|||||||| |||||||| |||||||| |||||| ||||||||||||| ||||||||||||
Sbjct 688 AAGGAGTTAAAATCCATTTATAGGATTTCAACATCATCTCAGCTTCTATTCTCCACTCAA 747
Query 829 CTGGAGTTT 837
||||||||
Sbjct 748 TTGGAGTTT 756
Score = 63.9 bits (34), Expect = 2e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 516 TTACCCTGATGACAAATTTATGAGATCTCTTTCCTCA 552
||||||| |||||||||||||||||||||||||||||
Sbjct 471 TTACCCTAATGACAAATTTATGAGATCTCTTTCCTCA 507
> Ahg891601 jgi|Araly1|891601|Al_scaffold_0007_3587
Length=369
Score = 335 bits (181), Expect = 4e-91
Identities = 304/360 (84%), Gaps = 22/360 (6%)
Strand=Plus/Plus
Query 153 TTTTG-TAGATGTTTCTTCTCCGGTATGCCTCCCA-CCTCTCAAACGTCTTCTCCTTGTC 210
||||| ||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 14 TTTTGTTAGATGTTTCTTCTCCGGTATGCCTCCCATCC-CTCAAACGTCTTCACCTTGTC 72
Query 211 TTTGTGGTATACAAAGATGATGATTATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTC 270
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 73 TTTGTGGTATACAAAGATGAAGATTCTGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTC 132
Query 271 GAATATTTGTATGTGTTGCA---ACATGAGCAAGACAATGTGACAAAGTTTAGTGTAAAA 327
||| | ||||||||| ||| |||| | |||||||||||||| |||||||||||||||
Sbjct 133 GAAGAATTGTATGTGGTGCGTCGACATAACCAAGACAATGTGACCAAGTTTAGTGTAAAA 192
Query 328 GTTCCATCTTTAGAGACTTTAATATATTTTTATCG-GAAAGCAAAAGTACTTGACG-AG- 384
|| |||||||||||||| |||| |||| | || | |||| |||||||| | | || ||
Sbjct 193 GTGCCATCTTTAGAGACCTTAACGTATTGTAAT-GTGAAACCAAAAGTAGTCGGCGGAGA 251
Query 385 -GA---AGA---TATTGGAAGATCTTTGGCCATAGATTCT-AAGATTTTAAAGAAATTCT 436
|| ||| ||||||| ||||||||| ||||||||| || |||| |||| |||||
Sbjct 252 AGATGTAGAGGATATTGGAGGATCTTTGGTCATAGATTCAGAAAATTT-AAAGGAATTCG 310
Query 437 TCATCGCAGATT-ATTCTACAAACTCGTGCTCGATTGAGAACAAACC-TAGCTTTGATAA 494
|||||||||| || | |||||||| ||||||||||||||||| || | || ||| |||
Sbjct 311 CCATCGCAGATACAT-CGACAAACTCTTGCTCGATTGAGAACAAGCCCTCGCCTTGGTAA 369
> Ahg947691 jgi|Araly1|947691|scaffold_703920.1
Length=966
Score = 231 bits (125), Expect = 5e-60
Identities = 143/151 (95%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 713 AGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATGAAGG 772
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 811 AGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAGTGGAATAAAAAGAAGATAATGAAGG 870
Query 773 AGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAACTGG 832
|||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 871 AGTTAAAATCCATGTATAGGATTTCAACAACATGTCAGCTTCTCTTCTCCACTCAACTGG 930
Query 833 AGTTTAAGCCTTTG-TGGACTCCATTTAGAA 862
||||| |||||| | |||||||||||| |||
Sbjct 931 AGTTTGAGCCTT-GATGGACTCCATTT-GAA 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33128814873
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5