BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G40750.1 Length=894 Score E Sequences producing significant alignments: (Bits) Value Ahg493905 jgi|Araly1|493905|fgenesh2_kg.7__3338__AT5G40750.1 512 2e-144 Ahg891601 jgi|Araly1|891601|Al_scaffold_0007_3587 335 4e-91 Ahg947691 jgi|Araly1|947691|scaffold_703920.1 231 5e-60 > Ahg493905 jgi|Araly1|493905|fgenesh2_kg.7__3338__AT5G40750.1 Length=780 Score = 512 bits (277), Expect = 2e-144 Identities = 396/450 (88%), Gaps = 21/450 (5%) Strand=Plus/Plus Query 1 ATGGCAGTTTATTTGGACGATGGT-GC-CGTAGCT-GAATCATTGCGACTCCACAAGGCA 57 ||||| || ||||||||||||||| | || | || | |||||||||||||||||||||| Sbjct 1 ATGGCTGTCTATTTGGACGATGGTACCACG-A-CTCG-ATCATTGCGACTCCACAAGGCA 57 Query 58 CCTATATTAGAAAGATT-GACTATAAAACTCGGTCCACATTGTCCTGTTAATGCTAACGT 116 |||||||||||||| || || |||| ||||||||||||||||||||||| |||||||||| Sbjct 58 CCTATATTAGAAAGTTTGGA-TATAGAACTCGGTCCACATTGTCCTGTTGATGCTAACGT 116 Query 117 GGGAAAGTGGATTGGAAATGCGGTTGATCGCAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176 |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 117 GGGAAAGTGGATAGCAAATGCGGTTGATCGTAGGGTTTTTGTAGATGTTTCTTCTCCGGT 176 Query 177 ATGCCTCCCA-CCTCTCAAACGTCTTCTCCTTGTCTTTGTGGTATACAAAGATGATGATT 235 |||||||||| || ||||||||||||| |||||||| |||||| ||||||||||| |||| Sbjct 177 ATGCCTCCCATCC-CTCAAACGTCTTCACCTTGTCTCTGTGGTGTACAAAGATGAAGATT 235 Query 236 ATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCGAATATTTGTATGTGTTGCAACATG 295 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 236 CTGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTCAAATATTTGTATGTGTTGCGGCATG 295 Query 296 AGCAAGACAATGTGACAAAGTTTAGTGTAAAAGTTCCATCTTTAGAGACTTTAATATATT 355 | |||||||| ||||| || |||||||||||||| |||||||||||||| |||| |||| Sbjct 296 ACCAAGACAACGTGACCAATTTTAGTGTAAAAGTGCCATCTTTAGAGACCTTAACGTATT 355 Query 356 TTTATCG-GAAAGCAAAAGTACTTGACGA-G--GA---A---GATATTGGAAGATCTTTG 405 | || | |||| |||||||| | | ||| | || | ||||||||| |||||||| Sbjct 356 GTAAT-GTGAAACCAAAAGTAGTCGGCGAAGAAGATGTACAAGATATTGGAGGATCTTTG 414 Query 406 GCCATAGATTCTAAGATTTTAAAGAAATTC 435 |||||||||||||||||||||||| ||||| Sbjct 415 GCCATAGATTCTAAGATTTTAAAGGAATTC 444 Score = 375 bits (203), Expect = 2e-103 Identities = 234/249 (94%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 590 AACCGAATGATATTCCTCCATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAAAGAAT 649 ||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| Sbjct 509 AACCGAATGATGTTCCACTATGCTTGTCAACCAAACTCAAGATCTTTGAGTGGAACGAAT 568 Query 650 ATGGAGCG-ACAAGCGAAGAGAAACAAGTGTTAAGTTACATTCTTGCCAACTCCAAATGT 708 |||||| | ||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 569 ATGGAG-GAACAAGCGAAGAGAAACATGTATTAAGTTACATTCTTGCCAACTCCAAATGT 627 Query 709 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATG 768 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 628 TTAAAGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAAAAGATAATG 687 Query 769 AAGGAGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAA 828 |||||||| |||||||| |||||||| |||||| ||||||||||||| |||||||||||| Sbjct 688 AAGGAGTTAAAATCCATTTATAGGATTTCAACATCATCTCAGCTTCTATTCTCCACTCAA 747 Query 829 CTGGAGTTT 837 |||||||| Sbjct 748 TTGGAGTTT 756 Score = 63.9 bits (34), Expect = 2e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 516 TTACCCTGATGACAAATTTATGAGATCTCTTTCCTCA 552 ||||||| ||||||||||||||||||||||||||||| Sbjct 471 TTACCCTAATGACAAATTTATGAGATCTCTTTCCTCA 507 > Ahg891601 jgi|Araly1|891601|Al_scaffold_0007_3587 Length=369 Score = 335 bits (181), Expect = 4e-91 Identities = 304/360 (84%), Gaps = 22/360 (6%) Strand=Plus/Plus Query 153 TTTTG-TAGATGTTTCTTCTCCGGTATGCCTCCCA-CCTCTCAAACGTCTTCTCCTTGTC 210 ||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| Sbjct 14 TTTTGTTAGATGTTTCTTCTCCGGTATGCCTCCCATCC-CTCAAACGTCTTCACCTTGTC 72 Query 211 TTTGTGGTATACAAAGATGATGATTATGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTC 270 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 73 TTTGTGGTATACAAAGATGAAGATTCTGTTGTTAGGCTCTTATCGAGTTGTCCTATTCTC 132 Query 271 GAATATTTGTATGTGTTGCA---ACATGAGCAAGACAATGTGACAAAGTTTAGTGTAAAA 327 ||| | ||||||||| ||| |||| | |||||||||||||| ||||||||||||||| Sbjct 133 GAAGAATTGTATGTGGTGCGTCGACATAACCAAGACAATGTGACCAAGTTTAGTGTAAAA 192 Query 328 GTTCCATCTTTAGAGACTTTAATATATTTTTATCG-GAAAGCAAAAGTACTTGACG-AG- 384 || |||||||||||||| |||| |||| | || | |||| |||||||| | | || || Sbjct 193 GTGCCATCTTTAGAGACCTTAACGTATTGTAAT-GTGAAACCAAAAGTAGTCGGCGGAGA 251 Query 385 -GA---AGA---TATTGGAAGATCTTTGGCCATAGATTCT-AAGATTTTAAAGAAATTCT 436 || ||| ||||||| ||||||||| ||||||||| || |||| |||| ||||| Sbjct 252 AGATGTAGAGGATATTGGAGGATCTTTGGTCATAGATTCAGAAAATTT-AAAGGAATTCG 310 Query 437 TCATCGCAGATT-ATTCTACAAACTCGTGCTCGATTGAGAACAAACC-TAGCTTTGATAA 494 |||||||||| || | |||||||| ||||||||||||||||| || | || ||| ||| Sbjct 311 CCATCGCAGATACAT-CGACAAACTCTTGCTCGATTGAGAACAAGCCCTCGCCTTGGTAA 369 > Ahg947691 jgi|Araly1|947691|scaffold_703920.1 Length=966 Score = 231 bits (125), Expect = 5e-60 Identities = 143/151 (95%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 713 AGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATGAAGG 772 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 811 AGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAGTGGAATAAAAAGAAGATAATGAAGG 870 Query 773 AGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAACTGG 832 |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 871 AGTTAAAATCCATGTATAGGATTTCAACAACATGTCAGCTTCTCTTCTCCACTCAACTGG 930 Query 833 AGTTTAAGCCTTTG-TGGACTCCATTTAGAA 862 ||||| |||||| | |||||||||||| ||| Sbjct 931 AGTTTGAGCCTT-GATGGACTCCATTT-GAA 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33128814873 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5