BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40760.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947665 jgi|Araly1|947665|scaffold_703894.1 2643 0.0
Ahg322854 jgi|Araly1|322854|fgenesh1_pm.C_scaffold_5000398 1548 0.0
> Ahg947665 jgi|Araly1|947665|scaffold_703894.1
Length=1588
Score = 2643 bits (1431), Expect = 0.0
Identities = 1531/1580 (97%), Gaps = 3/1580 (0%)
Strand=Plus/Plus
Query 181 AGGTTTTA-AGGAGATGGGATCTGGTCAATGGCACGTTGAGAAAAGGTCTACGTTTAGGA 239
|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 7 AGGTTTTATAGAAGATGGGATCTGGTCAATGGCACGTTGAGAAAAGGTCTACTTTTAGGA 66
Query 240 ATGATTCGTTTGTGAGAGAATATGGTATAGTTCCAGAAACTGGTTGTCTTTCAATCATAG 299
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 67 ATGATTCGTTTGTAAGAGAATATGGTACAGTTCCAGAAACTGGTTGTCTTTCAATCATAG 126
Query 300 TTCTTGGTGCTTCTGGTGATCTTGCTAAGAAGAAGACTTTTCCTGCTCTTTTTAACTTAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 127 TTCTTGGTGCTTCTGGTGATCTTGCTAAGAAGAAGACTTTTCCTGCTCTTTTTAACCTAT 186
Query 360 ACCGTCAGGGATTTCTCAATCCAGATGAAGTTCATATTTTCGGGTATGCGAGGACTAAGA 419
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 187 ACCGTCAGGGGTTTCTCAATCCAGATGAAGTTCATATTTTCGGGTATGCGCGGACTAAGA 246
Query 420 TTTCTGATGAAGAGCTGAGAGATAGGATTCGTGGATATCTTGTTGATGAGAAGAATGCTG 479
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 247 TTTCTGATGAAGAACTGAGAGATCGGATTCGTGGATATCTTGTTGATGAGAAGAATGCTG 306
Query 480 AGCAAGCTGAAGCTTTGTCAAAGTTTCTGCAGCTGATTAAGTATGTGAGTGGCCCTTATG 539
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 307 AGCAAGCTGAAGCTTTGTCAAAGTTTCTACAGCTGATTAAGTATGTGAGTGGCCCTTATG 366
Query 540 ATGCTGAGGAGGGGTTCCAGAGATTAGACAAGGCAATTTCAGAGCACGAAATCTCCAAAA 599
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 367 ATTCTGAGGAGGGGTTCCAGAGATTAGACAATGCAATTTCAGAGCACGAAATCTCCAAAA 426
Query 600 ATAGTACTGAAGGGTCTTCTAGAAGACTGTTTTATCTTGCACTTCCACCGTCTGTTTATC 659
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 427 ATAGTACTGAAGGGTCTTCTAGGAGACTGTTTTACCTTGCACTTCCACCGTCTGTTTATC 486
Query 660 CTTCTGTATGCAAGATGATCAAGACGTGCTGCATGAACAAATCTGATCTTGGTGGATGGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 CTTCTGTATGCAAGATGATCAAGACGTGCTGCATGAACAAATCTGATCTTGGTGGATGGA 546
Query 720 CACGGATTGTTGTGGAGAAGCCATTTGGCAAGGACCTTGAATCTGCAGAGCAACTGAGTT 779
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 547 CACGGATTGTTGTTGAGAAGCCATTTGGCAAGGACCTGGAATCTGCAGAGCAACTGAGTT 606
Query 780 CTCAGATTGGAGAGTTATTTGATGAATCACAGATCTATCGTATAGACCATTATCTTGGGA 839
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CTCAGATTGGAGAGTTGTTTGATGAATCACAGATCTATCGTATAGACCATTATCTTGGGA 666
Query 840 AGGAATTAGTTCAAAACATGTTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTT 899
| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 667 AAGAATTGGTTCAAAACATGTTGGTCCTCCGATTTGCCAATCGCTTTTTCTTGCCACTTT 726
Query 900 GGAACCGTGACAATATCGAGAACGTGCAGATTGTTTTCAGGGAAGATTTTGGAACTGAAG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GGAACCGTGACAATATCGAGAACGTGCAGATTGTTTTCAGGGAAGATTTTGGAACTGAAG 786
Query 960 GGCGTGGCGGATATTTTGACGAATATGGAATAATCCGTGATATTATTCAAAACCATCTGC 1019
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GGCGTGGCGGATATTTTGATGAATATGGAATAATCCGTGATATTATTCAAAACCATCTGC 846
Query 1020 TACAGGTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 847 TACAGGTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCACATCC 906
Query 1080 GGGATGAGAAAGTGAAGGTGCTTCAATCTGTGGTTCCGATAAGCGATGACGAGGTAGTTC 1139
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 907 GGGATGAGAAAGTGAAGGTGCTTCAATCGGTGGTTCCGATAAGCGATGACGAGGTAGTTC 966
Query 1140 TTGGACAATACGAAGGATATAGGGATGATGATACTGTTCCAAACGACTCAAACACTCCAA 1199
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 967 TTGGACAATATGAAGGATATAGGGATGATTCTACTGTTCCAAACGACTCAAACACTCCAA 1026
Query 1200 CATTTGCCACAACAATCCTTCGCATACACAACGAAAGATGGGAAGGTGTTCCATTTATAT 1259
||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1027 CATTTGCCACAACGATTCTTCGCATACACAATGAAAGATGGGAAGGTGTTCCATTTAT-T 1085
Query 1260 -TAAAGGCCGGAAAAGCGTTGAATTCAAGGAAGGCAGAAATTCGCATTCAATTCAAGGAT 1318
||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 1086 CTAAAGGCCGGAAAGGCGTTGAATTCAAGGAAGGCAGAAATTAGAATTCAGTTCAAGGAT 1145
Query 1319 GTCCCAGGCGACATATTCAGATGTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTG 1378
|| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1146 GTTCCAGGCGATATATTCAAATGTCAGAAGCAAGGAAGGAACGAGTTTGTGATACGCTTG 1205
Query 1379 CAACCTTCAGAGGCAATGTACATGAAACTAACTGTTAAGCAACCAGGTCTAGATATGAAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1206 CAACCTTCAGAGGCAATGTACATGAAACTAACTGTTAAGCAACCAGGTCTAGAGATGAAT 1265
Query 1439 ACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCT 1498
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1266 ACTGTGCAAAGTGAACTGGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCGATCCCT 1325
Query 1499 GAGGCATACGAGCGCTTAATTCTTGACACAATCAAAGGCGATCAACAACATTTCGTTCGT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GAGGCATACGAGCGCTTAATTCTTGACACAATCAAAGGCGATCAACAACATTTCGTTCGT 1385
Query 1559 AGAGACGAATTAAAGGTTGCGTGGGAGATCTTCACGCCGCTACTCCACAGGATCGACAAA 1618
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1386 AGAGACGAATTAAAGGTTGCGTGGGAGATCTTCACGCCGCTACTTCACAGGATCGACAAA 1445
Query 1619 GGAGAAGTAAAGTCAATCCCATACAAACCAGGAAGCCGAGGACCGAAAGAAGCTGATCAG 1678
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GGAGAAGTGAAGTCAATCCCATACAAACCAGGAAGCCGAGGACCGAAAGAAGCTGATCAG 1505
Query 1679 CTACTAGAGAAAGCTGGTTATCTTCAGACTCACGGCTATATCTGGATCCCTCCTACACTA 1738
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1506 CTACTAGAAAAAGCTGGTTATCTTCAAACTCATGGCTATATCTGGATCCCTCCTACACTA 1565
Query 1739 TAAAACCCTACATATATATA 1758
||||||||||||||||||||
Sbjct 1566 TAAAACCCTACATATATATA 1585
> Ahg322854 jgi|Araly1|322854|fgenesh1_pm.C_scaffold_5000398
Length=1566
Score = 1548 bits (838), Expect = 0.0
Identities = 1328/1562 (85%), Gaps = 43/1562 (3%)
Strand=Plus/Plus
Query 200 TCTGGTCAATGGCACGTTGAGAAAAGGTCTACGTTT-AGGAATGATTCGTTTGTGAGAGA 258
|||||||||||||| | ||||| |||||||| ||| | ||||||||||||||| | |||
Sbjct 16 TCTGGTCAATGGCATATGGAGAAGAGGTCTAC-TTTAAAGAATGATTCGTTTGTAAAAGA 74
Query 259 ATATGGTATAGTTC-CAGAAACTGGTTGTCTTTCAATCATAGTTCTTGGTGCTTCTGGTG 317
||| | || || | |||||||| |||| || ||||| |||||||||||||||||||
Sbjct 75 ATACAATCCAG-TCTCTGAAACTGGGAGTCTCTCTATCATTGTTCTTGGTGCTTCTGGTG 133
Query 318 ATCTTGCTAAGAAGAAGACTTTTCCTGCTCTTTTTAA-CTTATACCGTCAGGGATTTCTC 376
|||||||||||||||||||||||||||| ||||| | ||| |||| ||||||||||||
Sbjct 134 ATCTTGCTAAGAAGAAGACTTTTCCTGCACTTTTCCATCTT-TACCATCAGGGATTTCTT 192
Query 377 AATCCAGATGAAGTTCATAT-TTTCGGGTATGCGAGGACTAAGATTTCTGATGAAGAGCT 435
|||||||||||||||||||| ||| || ||||| |||| ||||||||||||||| |||||
Sbjct 193 AATCCAGATGAAGTTCATATATTT-GGATATGCAAGGAGTAAGATTTCTGATGAGGAGCT 251
Query 436 GAGAGATAGGATTCGTGGATATCTTGTTGATGAGAAGAATGC-T--GAGCAA-GCTGAAG 491
||||||| || || ||||||||||||||||||| |||||| | || ||| || ||||
Sbjct 252 TAGAGATAAAATCCGCGGATATCTTGTTGATGAGAGGAATGCATCTGA-CAAAGCAGAAG 310
Query 492 CTTTGTCAAAGTTTCTGCAGCTGATTAAGTATGTGAGTGGCCCTTATGATGCTGAGGAGG 551
||||||| |||||| | |||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 311 CTTTGTCCAAGTTTTTAAAGCTGATTAAGTATGTGAGTGGACCTTATGATTCTGAGGAAG 370
Query 552 GGTTCCAGAGATTAGACAAGGCAATTTCAGAGCACGAAATCTCCAAAAATAGTACTGAAG 611
|||| |||||||||| |||| ||||| |||||||| ||||| |||| | | ||||||
Sbjct 371 GGTTTAAGAGATTAGATGAGGCGATTTCGGAGCACGAGATCTCTAAAAGGACTTCTGAAG 430
Query 612 GGTCTTCTAGAAGACTGTTTTATCTTGCACTTCCACCGTCTGTTTATCCTTCTGTATGCA 671
| |||||||| ||| ||||||||||||||||||| |||||||| || ||| ||||| |||
Sbjct 431 GATCTTCTAGGAGATTGTTTTATCTTGCACTTCCGCCGTCTGTATACCCTCCTGTAAGCA 490
Query 672 AGATGATCAAGACGTGCTGCA-TGAACAAATCTGATCTTGGTGGATGGACACGGATTGTT 730
||||||||||| | || |||| | |||||||||||||||||||||||||| ||||| |||
Sbjct 491 AGATGATCAAGGCATGGTGCACT-AACAAATCTGATCTTGGTGGATGGACTCGGATCGTT 549
Query 731 GTGGAGAAGCCATTTGGCAAGGACCTTG-AATCTGCAGAGCAACTGAGTTCTCAGATTGG 789
|| |||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||
Sbjct 550 GTTGAGAAGCCGTTTGGAAAGGAT-TTGGAATCTGCAGAGCAACTGAGTTCTCAGATTGG 608
Query 790 AGAGTTATTTGATGAATCACAGATCTATCGTATAGACCATTATCTTGGGAAGGAATTAGT 849
| | | ||||||||| ||||||| |||||||| || || ||||| || || ||||||||
Sbjct 609 GGCGCTGTTTGATGAACCACAGATTTATCGTATTGATCACTATCTAGGAAAAGAATTAGT 668
Query 850 TCAAAACATGTTGGTCCTCCGGTTTGCAAATCGCTT-TTTCTTGCCACTTTGGAACCGTG 908
|||||||||||||| || || ||||| ||||| || ||| |||||||| |||||||| |
Sbjct 669 CCAAAACATGTTGGTTCTTCGCTTTGCCAATCGTTTGTTT-TTGCCACTATGGAACCGCG 727
Query 909 ACAATATCG-AGAACGTGCAGATTGTTTTCAGGGAAGATTTTGGAACTGAAGGGCGTGGC 967
| ||||| | | ||||| ||||| |||||||| |||||||| ||||||||||| || ||
Sbjct 728 ATAATATTGCA-AACGTACAGATCGTTTTCAGAGAAGATTTCGGAACTGAAGGTCGCGGG 786
Query 968 GGATATTTTGACGAATATGGAATAATCCGTGATATTATTCAAAACCATCT-GCT--A--C 1022
||||||||||| ||||| ||||| || || ||||||||||||||||| || ||| | |
Sbjct 787 GGATATTTTGATGAATACGGAATCATTCGCGATATTATTCAAAACCA-CTTGCTCCAGGC 845
Query 1023 A-G-GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCG 1080
| | |||||||||||||||||||||||||||||||| || |||||||| ||||| |||||
Sbjct 846 AAGTGTTCTTTGCCTTGTTGCCATGGAGAAACCAATCTCCCTTAAACCCGAGCACATCCG 905
Query 1081 GGATGAGAAAGTGAAGGTGCTTCAATCTGTGGTTCCGATAAGCGATGACGAGGTAGTTCT 1140
|||||||||||||||||| |||||||||||| |||| |||| ||||| ||||| |||||
Sbjct 906 GGATGAGAAAGTGAAGGTTCTTCAATCTGTGATTCCCATAAAAGATGAAGAGGTGGTTCT 965
Query 1141 TGGACAATACGAAGGATATAGGGATGATG-ATACTGTTCCAAACGACTCAAACACTCCAA 1199
||||||||| ||||||||||| |||||| | ||||||||||| ||||||||||||||||
Sbjct 966 TGGACAATATGAAGGATATAGAGATGATCCA-ACTGTTCCAAATGACTCAAACACTCCAA 1024
Query 1200 CATTTGCCACAACAATCCTTCGCATACACAACGAAAGATGGGAAGGTGTTCCATTTATAT 1259
| |||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||
Sbjct 1025 CGTTTGCCACAACAATTCTTCGCATAGACAATGAAAGATGGGAAGGTGTTCCTTTTATAC 1084
Query 1260 TAAAGGCCGGAAAAGCGTTGAATTCAAGGAAGGCAGAAATTCGCATTCAATTCAAGGATG 1319
| ||||||||||| || ||| ||||| ||||||||| ||||||||||| || |||||||
Sbjct 1085 TGAAGGCCGGAAAGGCAATGAGTTCAAAGAAGGCAGATATTCGCATTCAGTTTAAGGATG 1144
Query 1320 TCCCAGGCGACATATTCAGATGTCAAAAGCAAGGAAGGAACGAGTTTGTGATACGCTTGC 1379
| || ||||||||||| | ||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1145 TTCCTGGCGACATATTTAAATGTCAAAACCAAGGGAGGAACGAGTTTGTTATACGCTTGC 1204
Query 1380 AACCTTCAGAGGCAATGTACATGAAACTAACTGTTAAGCAACCAGGTCTAGATATG-AAT 1438
| ||||||||||| ||||||||||| |||||||| |||||||| ||||| || ||| ||
Sbjct 1205 AGCCTTCAGAGGCCATGTACATGAAGCTAACTGTGAAGCAACCGGGTCTGGAGATGCAA- 1263
Query 1439 ACTGTGCAAAGTGAACTAGACTTGTCGTATGGGCAACGGTATCAAGGTGTCGCTATCCCT 1498
|||||||| |||||||||||| |||| || ||| || || |||| |||| | || ||
Sbjct 1264 ACTGTGCAGAGTGAACTAGACCTGTCATACAAGCAGCGTTACCAAGATGTCTCGATTCCA 1323
Query 1499 GAGGCATACGAGCGC-TTAATTCTTGACACAATCAAAGGCGATCAACAACA-TTTCGTTC 1556
||||| ||||| ||| ||| |||||||||||||||||||||| |||||||| ||| ||||
Sbjct 1324 GAGGCTTACGAACGCCTTA-TTCTTGACACAATCAAAGGCGACCAACAACACTTT-GTTC 1381
Query 1557 GTAGAGACGAATTAAAGGTTGCGTGGGAGATCTTCACGCCGCTACTCCACAGGATCGACA 1616
| ||||||||||| |||| || ||||| |||||||| || | || |||||||||||||
Sbjct 1382 GCAGAGACGAATTGAAGGCAGCTTGGGAAATCTTCACTCCATTGCTTCACAGGATCGACA 1441
Query 1617 AAGGAGAAGTAAAGTCAATCCCATACAAACCAGGAAGCCGAGGACCGAAAG-AAGCTGAT 1675
| ||||||||||| || ||||||||||||| ||| ||||| || || | | |||| |||
Sbjct 1442 AGGGAGAAGTAAAATCGATCCCATACAAACAAGGTAGCCGTGGCCC-AGCGGAAGCAGAT 1500
Query 1676 CAGCTACT-AGAGAAAGCTGGTTAT-CTTCAGACTCACGGCTATATCTGGATCCCTCCTA 1733
|||||||| | |||||||||||||| | ||||| || ||||| || |||||||||||||
Sbjct 1501 CAGCTACTTA-AGAAAGCTGGTTATACG-CAGACCCATGGCTACATTTGGATCCCTCCTA 1558
Query 1734 CA 1735
||
Sbjct 1559 CA 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5