BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40770.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493903 jgi|Araly1|493903|fgenesh2_kg.7__3336__AT5G40770.1 1759 0.0
Ahg484510 jgi|Araly1|484510|fgenesh2_kg.5__502__AT3G27280.1 780 0.0
> Ahg493903 jgi|Araly1|493903|fgenesh2_kg.7__3336__AT5G40770.1
Length=1414
Score = 1759 bits (952), Expect = 0.0
Identities = 1070/1125 (95%), Gaps = 15/1125 (1%)
Strand=Plus/Plus
Query 1 ATATCATAAACCCTAGCAGAAActctttcctctctcgtcgtctcaaatctcttcttcctt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATATCATAAACCCTAGCAAAAACTCTTTCCTCTCTCGTCGTCTCAAATCTC-TCTTCCTT 59
Query 61 -cttcttctctctcGATTCAAGATAATC--CACACGCAAAAATGGGAAGCCAACAAGCGG 117
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 60 CCTTCTTCTCTCTCGATTCAAGCTAATCGACACACGCAAAAATGGGAAGCCAACAAGCGG 119
Query 118 CTGTTTCGTTCCTTTCCAATTTGGCGAAGGCTGCTTTCGGTCTTGGAACGGCGGCGACGG 177
| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 120 CGGTTTCGTTCCTTTCCAATTTGGCAAAGGCAGCTTTCGGTCTCGGAACGGCGGCGACGG 179
Query 178 TGCTGAATACATCGCTTTTCACCGTTGACGGCGGAGAAAGAGCTGTTATCTTCGATCGAT 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGTTGAATACATCGCTTTTCACCGTTGACGGCGGAGAAAGAGCTGTTATCTTCGATCGAT 239
Query 238 TCAGGGGAGTGATGGATCAGACTGTGGGTGAAGGGACTCATTTCTTGATCCCGATTCTTC 297
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 240 TCAGAGGAGTGATGGATCAGACTGTTGGTGAAGGAACTCATTTCTTGATCCCGATTCTTC 299
Query 298 AGAGGCCTCACATCTTCGATATCCGCACGAAGCCTCACACGTTCTCTTCAATCTCTGGTA 357
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 AGAGACCTCACATCTTCGATATCCGCACGAAGCCTCACACGTTCTCTTCAATCTCTGGAA 359
Query 358 CTAAGGATCTCCAGATGGTTAATCTCACTCTTCGTGTTCTCTCTCGTCCTGAGGTGTCGC 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 CTAAGGATCTCCAGATGGTTAATCTCACTCTTCGTGTTCTCTCTCGCCCTGAGGTGTCGC 419
Query 418 GTCTCCCGTACATCTTCCAAACTTTGGGTCTAGAGTATGACGAGAAGGTTCTTCCTTCGA 477
|||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 420 GTCTCCCGTATATTTTCCAAACCTTGGGTCTAGAGTATGACGAGAAGGTTCTGCCTTCGA 479
Query 478 TTGGAAATGAGGTTTTGAAAGCTGTGGTTGCACAGTTCAACGCTGACCAGCTTCTCACTG 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TTGGAAATGAGGTTTTGAAAGCTGTGGTTGCACAGTTCAACGCTGACCAGCTTCTCACAG 539
Query 538 AGCGTCCTCACGTCTCAGCACTTGTTCGGGAGTCACTAATCACCCGTGCGAAGGACTTCA 597
|||||||||||||||||||||||||||| ||||| ||||||| |||||| ||||||||||
Sbjct 540 AGCGTCCTCACGTCTCAGCACTTGTTCGAGAGTCGCTAATCAACCGTGCCAAGGACTTCA 599
Query 598 ACATTGTGCTTGATGATGTAGCTATCACGCATTTGTCCTATGGTGTGGAGTTTTCAAGGG 657
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACATTGTGCTTGACGATGTAGCTATCACGCATTTGTCCTATGGTGTGGAGTTTTCAAGGG 659
Query 658 CTGTTGAGCAGAAACAAGTGGCTCAGCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGA 717
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 660 CTGTTGAGCAGAAACAAGTGGCTCAACAGGAGGCAGAGAGGTCTAAGTTTGTGGTGATGA 719
Query 718 AGGCTGATCAAGAGAGGAGAGCTGCGGTTATAAGAGCTGAAGGTGAAAGTGAAGCTGCTC 777
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 AGGCTGATCAAGAGAGGAGAGCTGCGGTTATAAGAGCTGAAGGTGAGAGTGAAGCTGCTC 779
Query 778 AGTTGATTTCTGATGCTACGGCTAAAGCTGGTATGGGACTTATCGAGCTTAGGAGGATTG 837
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 780 AGTTGATTTCTGATGCTACGGCTAAAGCTGGAATGGGACTTATCGAGCTCAGGAGGATCG 839
Query 838 AAGCTTCAAGGGAGATTGCGTCTACACTTGCTAGGTCTCCTAATGTGGCCTACTTACCCG 897
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 AGGCTTCAAGGGAGATTGCGTCTACACTTGCTAGGTCTCCTAATGTGGCGTACTTACCCG 899
Query 898 GTGGCCAGAGCATGCTCTTTGCCCTGAACCGTTGATCTTGATCAGATATGATGGT-TGTT 956
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||
Sbjct 900 GTGGCCAGAGCATGCTCTTTGCTCTGAACCGTTGATCTTGATCAGATTTGATGGTATGTT 959
Query 957 -TGGG-AGCATTTTGCGATATTTTAATGATCAAGTTGTGAATCTGATTGAATCAAAAA-G 1013
|||| |||| | |||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 960 GTGGGGAGCAATG-GCGATATT--AATGATCAAGTTGTGAATCTGATTGAATCTAAACCG 1016
Query 1014 GTGAAATGCTCTTTTGTTTT--GATGAACTCTGAAGAA-GAAAAA-GAAACTAGTTGTTT 1069
|| ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||
Sbjct 1017 GTAAAATGCTCTTTTGTTTTCTGATGAACTCTGAAGAAAGAAAAAAGAAACTAGTTGTTT 1076
Query 1070 GAGTTGTCATTATTGTGTTCTGAATCTCGGCAAAATTTACTCTAC 1114
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 GAGTTGTCATTATTGTGTTCTGAATCTTGGCAAAATTTACTCTAC 1121
Score = 182 bits (98), Expect = 9e-45
Identities = 173/206 (84%), Gaps = 18/206 (9%)
Strand=Plus/Plus
Query 1355 TTTTTGCATAAACAGAGCAAGTTCAGAAACAAAGCAAATAAA-GAAGAGAAATCATG-AA 1412
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct 1218 TTTTTGCATAAACAGAGCAAGTTCAGAAACAAAGCAA-TAAAAGAAGAGAAATCATTCAA 1276
Query 1413 AGATA-GCCTTTTCTATCGAGATCCATTTTATCCATCGGTTTTAGtttttttttttttGG 1471
| || |||||| ||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1277 AC-TAAGCCTTT-CTATCGATATCCATTTTATCCATCGGTTTTAGTATTTTTTTTG--GG 1332
Query 1472 TCATCTAATGATAATG-A-TGACT--ATGTAAAGACGGCGTCGGTTCCTAGACTCAACTT 1527
|||||||||||| ||| | | ||| | ||||| | | || |||||| |||||||
Sbjct 1333 TCATCTAATGATGATGTAAT-ACTTCA-GTAAA--CTGAACCGAAACCTAGATTCAACTT 1388
Query 1528 ATGT--GTCTGTGTCAACAAACTCTA 1551
|||| || |||||||||||||||||
Sbjct 1389 ATGTTTGTGTGTGTCAACAAACTCTA 1414
> Ahg484510 jgi|Araly1|484510|fgenesh2_kg.5__502__AT3G27280.1
Length=934
Score = 780 bits (422), Expect = 0.0
Identities = 709/846 (84%), Gaps = 26/846 (3%)
Strand=Plus/Plus
Query 95 AAAAATGGGAAGCCAACAAGCGGCTG-TTTCGTTCCTTTCCAATTTGGCGAAGGCTGC-T 152
||||||||||| |||||||| || | ||||| |||| | || ||||||||||| || |
Sbjct 39 AAAAATGGGAATTCAACAAGCAGC-GATTTCGCTCCTGACGAACTTGGCGAAGGCGGCGT 97
Query 153 TTCGGTCTT-GGAACGGCGGCGACGGTGCTGAA-TACATCGCTTTTCACCGTTGACGGCG 210
|| ||| || || ||||||||||| ||||| | | || || | ||| ||||| || |
Sbjct 98 TT-GGT-TTAGGTGTGGCGGCGACGGCACTGAACT-CGTCACTCTACACTGTTGATGGTG 154
Query 211 GAGAAAGAGCTGT-TATCTTCGATCGATTCAGGGGAGTGATGGATCAGACTGTGGGTGAA 269
| || |||||||| | | ||||||||||||||||||||| ||||||||||||| || |||
Sbjct 155 GCGAGAGAGCTGTGT-TGTTCGATCGATTCAGGGGAGTGTTGGATCAGACTGTCGGCGAA 213
Query 270 GGGACTCATTTCTTGATCCCGAT-TCTTCAGAGGCCTCACATCTTCGATATCCGCACGAA 328
||||||||||||||||||||| | ||| |||| |||||||||| |||||| || |||||
Sbjct 214 GGGACTCATTTCTTGATCCCG-TATCTCCAGACACCTCACATCTACGATATTCGTACGAA 272
Query 329 GCCTCACACGTTCT-CTTCAATCTCTGGTACTAAGGATCTCCAGATGGTTAATCTCACTC 387
|||||||| |||| || ||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 273 ACCTCACACTTTCTCCTCCAA-ATCTGGTACTAAGGATCTTCAGATGGTTAATCTCACCC 331
Query 388 TTCGTGTTCTCTCTCGTCCTGAGGTGTCGCGTCTCCCGTACATCTT-CCAAACTTTGGGT 446
|||||||||||| ||| |||||||| |||||||||||| | || || |||||| ||||||
Sbjct 332 TTCGTGTTCTCTTTCGCCCTGAGGTTTCGCGTCTCCCGAAGAT-TTACCAAACATTGGGT 390
Query 447 CTAGAGTATGACGAGAAGGTTCTTCCTTCGATTGGAAATGAGGTTTTGAAAGCTGTGGTT 506
||||| || || ||||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct 391 CTAGAATACGATGAGAAAGTTCTTCCCTCAATTGGAAATGAGGTATTGAAAGCTGTGGTT 450
Query 507 GC-ACAGTTCAACGCTGACCAGCTTCTCACTGAGCGTCCTCACGTCTCAGCACTTGTTCG 565
|| || ||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||
Sbjct 451 GCTAC-TTTCAATGCTGATCAGCTCCTCACTGAGCGTCCTCAAGTATCAGCACTTGTTCG 509
Query 566 GGAGT-CACTAATCACCCGTGCGAAGGACTTCAACATTGTGCTTGATGATGTAGCTATCA 624
|| | | || |||| ||||| | ||| ||| ||||| ||| || || ||||||| |
Sbjct 510 TGA-TGCTCTTATCAAGCGTGCCAGGGAATTCGGCATTGAGCTCGACGACATAGCTATTA 568
Query 625 CGCATTTGTCCTATGGTG-TGGAGTTTTCAAGGGCTGTTGA-GCAGAAACAAGTGGCTCA 682
| || || || || |||| | ||||| || ||||| ||||| || ||| |||||||||||
Sbjct 569 CTCACTTATCATACGGTGCT-GAGTTCTCGAGGGCAGTTGAGGC-GAAGCAAGTGGCTCA 626
Query 683 GCAAGAGGCAGAGAGGTCTAAGTTTGTTGTGATGAAGGCTGATCAAGAGAGGAGAGCTGC 742
||| || || || ||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 627 GCAGGAAGCTGAAAGGTCAAAGTTTGTGGTGATGAAAGCTGATCAAGAGAGGAGAGCTGC 686
Query 743 GGTTATAAGAGCTGAAGGTGAAAGTGAAGCTGCTCAGTTGATTTCTGATGCTACGGCTAA 802
|||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 687 GGTTATAAGAGCAGAAGGTGAGAGTGAAGCTGCTCAGTTGATTTCAGATGCAACAGCTAA 746
Query 803 AGCTGGTATGGGACTTATCGAGCTTAGGAGGATTGAAGCTTCAAGGGAGATTGC-GTCTA 861
||| || |||||||| || |||||||||||||||||||||||||||||| |||| | |||
Sbjct 747 AGCAGGAATGGGACTAATTGAGCTTAGGAGGATTGAAGCTTCAAGGGAGGTTGCAG-CTA 805
Query 862 CACTTGCTAGGTCTCCTAATGTGGCCTACTTACCCGGTGGCCAGAGCATGCTCTTTGCCC 921
| || ||||||||||| || ||||| || ||||| ||||| || |||||||||||| | |
Sbjct 806 CTCTGGCTAGGTCTCCGAACGTGGCTTATTTACCTGGTGGACAAAGCATGCTCTTTTCTC 865
Query 922 TGAACC 927
||||||
Sbjct 866 TGAACC 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5