BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40780.1
Length=1712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947663 jgi|Araly1|947663|scaffold_703892.1 2239 0.0
Ahg921747 jgi|Araly1|921747|scaffold_103028.1 409 4e-113
> Ahg947663 jgi|Araly1|947663|scaffold_703892.1
Length=1388
Score = 2239 bits (1212), Expect = 0.0
Identities = 1334/1393 (96%), Gaps = 7/1393 (1%)
Strand=Plus/Plus
Query 144 tctctctctctccctctcaa-cctctcACCATGGTAGCTCAAGCTCCTCATGATGATCAT 202
|||||||||||| ||| ||| || |||||||||||||||||||| ||||||||||||| |
Sbjct 1 TCTCTCTCTCTCTCTCACAATCC-CTCACCATGGTAGCTCAAGCCCCTCATGATGATCTT 59
Query 203 CAGGATGATGAGAAATTAGCAGCAGCGAGACAAAAAGAGATCGAAGATTGGTTACCAATT 262
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 60 CAGGATGATGAGAAATTAGCAGCA---AGACAAAAGGAGATCGATGATTGGTTACCAATT 116
Query 263 ACTTCATCAAGAAATGCAAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTC 322
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACTTCATCAAGAAATGCTAAGTGGTGGTACTCTGCTTTTCACAATGTCACCGCCATGGTC 176
Query 323 GGTGCCGGAGTTCTTGGACTCCCTTACGCCATGTCTCAGCTCGGATGGGGACCGGGAATT 382
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 GGTGCCGGAGTTCTTGGACTCCCTTACGCCATGTCTCAGCTCGGATGGGGACCAGGAATT 236
Query 383 GCAGTGTTGGTTTTGTCATGGGTCATAACACTATACACATTATGGCAAATGGTGGAAATG 442
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GCAGTGTTGGTTCTATCATGGGTCATAACACTATACACATTATGGCAAATGGTGGAAATG 296
Query 443 CATGAAATGGTTCCTGGAAAGCGTTTTGATCGTTACCATGAGCTCGGACAACACGCGTTT 502
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 297 CATGAAATGGTTCCTGGGAAGCGTTTTGATCGTTACCATGAGCTTGGACAACACGCGTTT 356
Query 503 GGAGAAAAACTCGGTCTTTATATCGTTGTGCCGCAACAATTGATCGTTGAAATCGGTGTT 562
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GGAGAGAAGCTCGGTCTTTATATCGTTGTGCCGCAACAATTGATCGTTGAAATCGGTGTT 416
Query 563 TGCATCGTTTATATGGTCACTGGAGGCAAATCTTTAAAGAAATTTCATGAGCTTGTTTGT 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGCATCGTTTATATGGTCACTGGAGGCAAATCTTTAAAGAAATTTCATGAGCTTGTTTGT 476
Query 623 GATGATTGTAAACCAATCAAGCTTACTTATTTCATCATGATCTTTGCTTCGGTTCACTTC 682
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 477 GACGATTGTAAACCAATCAAACTTACTTATTTCATCATGATCTTTGCTTCTGTTCACTTC 536
Query 683 GTCCTCTCTCATCTTCCTAATTTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTT 742
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTCCTCTCTCATCTTCCCAATTTCAATTCCATCTCCGGCGTTTCTCTTGCTGCTGCCGTT 596
Query 743 ATGTCTCTCAGCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGTGTTCAAGAA 802
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 ATGTCTCTCAGCTACTCAACAATCGCATGGGCATCATCAGCAAGCAAAGGCGTTCAAGAA 656
Query 803 GACGTTCAATACGGTTACAAAGCGAAAACAACAGCCGGTACGGTTTTCAATTTCTTCAGC 862
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 657 GACGTTCAATACGGTTATAAAGCGAAAACAACAGCCGGTACAGTTTTCAATTTCTTCAGC 716
Query 863 GGTTTAGGTGATGTGGCATTTGCTTACGCGGGTCATAATGTGGTCCTTGAGATCCAAGCA 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTTTAGGTGATGTGGCATTTGCTTACGCGGGTCATAATGTGGTCCTTGAGATCCAAGCA 776
Query 923 ACTATCCCTTCAACGCCTGAGAAACCCTCAAAAGGTCCCATGTGGAGAGGAGTCATCGTT 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 ACTATCCCTTCAACGCCTGAGAAACCCTCAAAAGGTCCCATGTGGAGAGGAGTCATCGTT 836
Query 983 GCTTACATCGTCGTAGCGCTCTGTTATTTCCCCGTGGCTCTCGTTGGATACTACATTTTC 1042
||||| |||||||| ||||||||||||||||| |||||||| || ||||| || ||||||
Sbjct 837 GCTTATATCGTCGTTGCGCTCTGTTATTTCCCTGTGGCTCTAGTCGGATATTATATTTTC 896
Query 1043 GGGAACGGAGTCGAAGATAATATTCTCATGTCACTTAAGAAACCGGCGTGGTTAATCGCC 1102
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGGAACGGAGTGGAAGATAACATTCTCATGTCACTTAAGAAACCGGCGTGGTTAATCGCG 956
Query 1103 ACGGCGAACATCTTCGTCGTGATCCATGTCATTGGTAGTTACCAGATATATGCAATGCCG 1162
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 957 ACAGCGAACATCTTCGTCGTGATCCATGTCATCGGTAGTTACCAGATATATGCAATGCCG 1016
Query 1163 GTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACT 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTATTTGATATGATGGAGACTTTATTGGTCAAGAAGCTAAATTTCAGACCAACCACAACT 1076
Query 1223 CTTCGGTTCTTTGTCCGTAATTTCTACGTTGCTGCAACTATGTTTGTTGGTATGACGTTT 1282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1077 CTTCGGTTCTTTGTCCGTAATTTCTACGTTGCTGCAACTATGTTTGTTGGTATGACCTTT 1136
Query 1283 CCGTTCTTCGGTGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATAC 1342
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1137 CCGTTCTTCGGAGGGCTTTTGGCGTTCTTTGGTGGATTCGCGTTTGCTCCAACCACATAC 1196
Query 1343 TTCCTCCCTTGCGTCATTTGGTTAGCCATCTACAAACCCAAGAAATACAGCTTGTCTTGG 1402
|||||||||||| |||||||||||||||||||||||||||| |||| | |||||||||||
Sbjct 1197 TTCCTCCCTTGCATCATTTGGTTAGCCATCTACAAACCCAAAAAATTCGGCTTGTCTTGG 1256
Query 1403 TGGGCCAACTGGGTATGCATCGTGTTTGGTCTTTTCTTGATGGTCCTATCGCCAATTGGA 1462
|||||||||||||| || |||||||| ||||||||| | ||||| ||||| || ||||||
Sbjct 1257 TGGGCCAACTGGGTTTGTATCGTGTTCGGTCTTTTCCTAATGGTTCTATCACCGATTGGA 1316
Query 1463 GGGCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCATAAACGCTATGT 1522
|| |||||||||||||||||||||||||||||||||||||||||||| |||| || ||||
Sbjct 1317 GGTCTAAGGACAATCGTTATTCAAGCAAAAGGATACAAGTTTTACTCGTAAATGCAATGT 1376
Query 1523 AAT-TCCACTAAT 1534
||| || ||||||
Sbjct 1377 AATATC-ACTAAT 1388
> Ahg921747 jgi|Araly1|921747|scaffold_103028.1
Length=1369
Score = 409 bits (221), Expect = 4e-113
Identities = 861/1161 (74%), Gaps = 80/1161 (7%)
Strand=Plus/Plus
Query 243 TCGAAGATTGGTTACCAATTACTTCATCAAGAAATGCAAAGTGGTGGTACTCTGCTTTTC 302
|||| ||||||||||| || || || || ||||| || ||||||||||||||||||||||
Sbjct 79 TCGACGATTGGTTACCGATCACATCCTCCAGAAACGCTAAGTGGTGGTACTCTGCTTTTC 138
Query 303 ACAATGTCACCGCCATGGTCGGTGCCGGAGTTCTTGGACT--CCCTTACGCCATGTCTCA 360
||||||||||||||||||| ||||| || ||||| | || |||| |||| ||||| ||
Sbjct 139 ACAATGTCACCGCCATGGTTGGTGCTGGTGTTCTCAG-CTTGCCCT-ACGCTATGTC-CA 195
Query 361 G-CTCGGATGGGGACCGGGAATTG-C-AGTGTTGGTTTTGTCATGGGTCATAAC-ACTAT 416
|||||||||||||| || | | | | | | ||| |||||||| | ||||| | | |
Sbjct 196 ATCTCGGATGGGGACCTGGTGT-GACGATTAT-GGTGATGTCATGGTTAATAACTA-TGT 252
Query 417 ACACATTATGGCAAATGGTGGAAATGCATGAAATGGTTCCTGGAAAGCGTTTTGATCGTT 476
||||| | |||||||||||||| |||||||| || ||||| || ||| | ||||| | |
Sbjct 253 ACACACTGTGGCAAATGGTGGAGATGCATGAGATTGTTCCAGGGAAGAGGCTTGATAGGT 312
Query 477 ACCATGAGCTCGGACAACACGCGTTTGGAGAAAAACTCGGTCTTTATATCGTTGTGCCGC 536
| || ||||| || |||||||| ||||| ||||| || || || | ||||| |||||||
Sbjct 313 ATCACGAGCTAGGTCAACACGCTTTTGGCGAAAAGCTTGGCCTATGGATCGTCGTGCCGC 372
Query 537 AACAA-TTGATCGTTGAAATCGGTGTTTG-CATCGTTTATATGGTCACTGGAGGCAA-AT 593
| || || ||||| || ||||||| | |||||||||||||||||| ||||| | ||
Sbjct 373 AGCAGCTT-ATCGTGGAGGTCGGTGTA-GACATCGTTTATATGGTCACAGGAGG-AGCAT 429
Query 594 CT-TTAAAGAAATTTCATGAGCTTGTTTGTGATGATTGTAAACCAATCA-AGCTTACTTA 651
| |||| |||| | ||| | || | ||| |||||| ||| ||||| | || || |
Sbjct 430 CCCTTAA-GAAAGTCCATCAACTACTCTGTTCTGATTGCAAAGAAATCAGAACT-ACAT- 486
Query 652 TTTC-ATCATGATCTTTGCTTCGGTTCACTTCGTCCTCTCTCATCTTCCTAATTTCAATT 710
||| ||||||||||||||||| | || || || ||||||| ||||| |||||||| |
Sbjct 487 TTTGGATCATGATCTTTGCTTCCATCCATTTTGTTATCTCTCACCTTCCCAATTTCAACT 546
Query 711 CCATCTCCGGCGTTTCTCTTGCTGCTGCCGTTATGTCTCTCAGCT-ACTCAACAATCGCA 769
| |||||| | | || || || || || |||||||| || | || ||||||| |||||
Sbjct 547 CTATCTCCATCATCTCACTCGCCGCGGCTGTTATGTC-CTTAACTTACTCAACTATCGCT 605
Query 770 TGGGCAT-CATCAG--CAAGCAAAGGTGTTCAAGAAGACGTTCAATACGGTTACAA-AGC 825
||| | | | || | || |||||| || || ||| || | ||| | | | |||
Sbjct 606 TGGAC-TGCTTCGGTGCA--CAAAGGGGTACATCCAGATGTGGACTACACTC-CTAGAGC 661
Query 826 GAAAACA-ACAGCCGGTACGGTTTTCAATTTCTTCA--GCGGTTTAGGTGATGTGGCATT 882
|| | || || | || ||||| ||||| | ||| || || |||||||| ||
Sbjct 662 CTCTACCGAT-GCTGGAAAAGTATTCAACTTCTTGAATGCG-TTG-GGAGATGTGGCTTT 718
Query 883 TGCTTACGCGGGTCATAATGTGGTCCTTG-AGATCCAAGCAACTATCCCTTCAACGCCTG 941
||| || || ||||| || || || ||| |||| || || || |||||||| || || |
Sbjct 719 TGCCTATGCAGGTCACAACGTTGTG-TTGGAGATTCAGGCCACAATCCCTTCGACTCCGG 777
Query 942 AGAAACCCTCAAAAGGTCCCA-TGTGGAGAGGAGTCATCGTTGCTTACATCGTCGTAGCG 1000
||| || || || | ||||| ||||||||||||| | || || ||||| || || ||
Sbjct 778 AGATGCCATCCAA-GATCCCAATGTGGAGAGGAGTTGTTGTAGCCTACATTGTAGTCGC- 835
Query 1001 C-TCTGTTATTTCCCCGTGGC-TCTCGTTGGATACTACAT-TTTCGGGAACGGAGTCGAA 1057
| |||| || ||||| || || | || | || || || || ||| || ||| | || ||
Sbjct 836 CATCTGCTACTTCCCTGTAGCAT-TCCTCGGCTATTATATCTTT-GGAAACAGCGTTGAT 893
Query 1058 GATAATATTCTCATGTCACTTAAGA-AA-CCGG-CGTGG-TTAATCGCCACGGCGAACAT 1113
|| || |||||||| ||||| || || || | | ||| ||| | |||| ||| |||||
Sbjct 894 GACAACATTCTCAT--CACTTTGGAGAAGCCTGTC-TGGCTTATT-GCCATGGCTAACAT 949
Query 1114 CTTCGTCGT-GATCCATGTCATTGGTAGTTACCAGATATATGCAATGCCGGTATTTGATA 1172
||||| || | |||| |||||||| || || ||||||| |||||||||||||||||| |
Sbjct 950 GTTCGTGGTTG-TCCACGTCATTGGAAGCTATCAGATATTTGCAATGCCGGTATTTGACA 1008
Query 1173 TGATGGAGACT-TTATTGGTCAAGAAGCTAAATTTCAGA-CCAACCA-CAA-CTCTTCGG 1228
||||||| || || |||||||| ||| | |||||| || || || ||| ||| ||
Sbjct 1009 TGATGGAAACCGTT-TTGGTCAAAAAGATGAATTTC-GATCCTTCCTTCAAGCTC--CGC 1064
Query 1229 TTCTTTGTC-CGTAAT-TTCTACGTTGCTG-CAACTATGTTTGTTG-G-TATGACGTTTC 1283
|| | | | |||| || ||||| ||| || | ||| | |||| | |||| ||| |
Sbjct 1065 TT-TATCACTCGTAGCCTT-TACGTCGCTTTCA-CGATGATCGTTGCGATATG-CGTC-C 1119
Query 1284 CGTTCTTCGGTGGGCTT-TTGGCGTTCTTTGGTGGATTCGCGTTTGCCCCAACCACATAC 1342
|||| |||||||| || ||||| |||||||| |||||||| || |||||||| || |||
Sbjct 1120 CGTTTTTCGGTGGACTACTTGGC-TTCTTTGGAGGATTCGCCTTCGCCCCAACAACTTAC 1178
Query 1343 TTCCTCCCTTGCGTCATTTGG 1363
| ||| || ||| | ||||||
Sbjct 1179 TACCTTCCATGCATTATTTGG 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64220153070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5