BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40790.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947662 jgi|Araly1|947662|scaffold_703891.1 1343 0.0
> Ahg947662 jgi|Araly1|947662|scaffold_703891.1
Length=955
Score = 1343 bits (727), Expect = 0.0
Identities = 849/908 (94%), Gaps = 7/908 (1%)
Strand=Plus/Plus
Query 10 AACGGAAAGCAGTGTCAAGCTTCTATTTGCGACGGTGCAACAGATCAGGACAAGACCGTT 69
|||||||||||| | ||||||||| ||||||||||||| |||||||| |||||||| |||
Sbjct 30 AACGGAAAGCAGCGGCAAGCTTCTGTTTGCGACGGTGCTACAGATCAAGACAAGACTGTT 89
Query 70 ATAAGCAAGATAATGCAACGGTTCCGTCCGATCGCACCAAAACCAGCTGTCGGCGAATCT 129
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 90 ATAAGCAAGATAATGCAACGGTTCCGTCCGATCGCGCCAAAACCAGCTGTCGGTGAATCT 149
Query 130 TCAGACGATACAAATAGTGA-TAGATTCCTTGGAAGAAACAGAAGATCGAAACGAAAGTA 188
|| |||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 150 TCCGACGATGCAAAGAGT-AGCAGATTCCTTGGAAGAAACAGAAGATCGAAACGAAAGTA 208
Query 189 TGTTAGGGTTCGGGACAAGAAAAA-TAGTAGTGGTAGTAATAATAAGAAGGATATTACTG 247
||||||||||||||| || ||||| |||||||| ||||||||||||||| | || || |
Sbjct 209 TGTTAGGGTTCGGGATAA-AAAAACTAGTAGTGTTAGTAATAATAAGAATAAGATCACCG 267
Query 248 GTAAAAAGAATGGTTGCGATAGAGGGAACATAAAG-A--CCGATCTTGATAAAAAGATAG 304
||||||||||||||||||||||||||||| ||||| | || |||| |||||| ||||||
Sbjct 268 GTAAAAAGAATGGTTGCGATAGAGGGAACTTAAAGAATCCCAATCTCGATAAAGAGATAG 327
Query 305 ACGGTGATGATAGAACCGATATCGTCACGCTTCAGCTGCTGCCAGAGAAGGATAGAGATA 364
||||||||||||||| |||||||||||||||| || |||| || |||||||||||||||
Sbjct 328 ACGGTGATGATAGAAGCGATATCGTCACGCTTGAGTTGCTCCCGGAGAAGGATAGAGATC 387
Query 365 TAGGAAACAATGGAGATAAAGCTGGTGAGTTTTGTTCGGATCTGAGTGATATGGATCCAA 424
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TAGGAAACAATGGAGACCAAGCTGGTGAGTTTTGTTCGGATCTGAGTGATATGGATCCAA 447
Query 425 AAAAGAGCTTGTATAATTCGATCATAGGGCTATCGTCATCTTTTGATCGGAAGGTGGTGG 484
| || || |||||| ||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 448 AGAATAGTTTGTATGGTTCGATCATAGGGCTATCGTCATCTTTAGATCAGACGGTGGTGG 507
Query 485 AGTCGTGGTTGACGGTGGAGTGTGTGAGTGACACGTGTACTGACTTGGGATGGTATCACA 544
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 508 AGTCGTGGTTGACGGTGGAGTGTGTGAGTGACACGTGTGCTGACTTGGGAGGGTATCACA 567
Query 545 TCCTGGAGCAGCTAGGCCGCATGGATCAGGCAGAGGAGAGAGTGATGAGGATGTTAGAGG 604
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 568 TCCTGGAGCAGCTAGGCCGTATGGATCAGGGAGAAGAGAGAGTGATGAGGATGTTAGAGG 627
Query 605 TTGACACGTGTCCATGGTTAGTGTCGGATGGGTCAAACCGGGTCTGTTGGGTAAACCGGG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TTGACACGTGTCCATGGTTAGTGTCGGATGGGTCAAACCGGGTCTGTTGGGTAAACCGGG 687
Query 665 CCTACCGGAGGATGATGGGAGCTCCCGACGTGGATGTTATCAGGGTGTGGCTGGTGGTGG 724
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||
Sbjct 688 CGTACCGGAGGATGATGGGAGCTCCGGACGTGGAGGTTATCAGGGTATGGCTGGGGGTGG 747
Query 725 CCATGGACCTTATGGAGGAGATAGCATGCATGGTGGAGTTATACGGTGCGGTGACGTGCA 784
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 CCATGAACCTTATGGAGGAGATAGCATGCATGGTGGAGTTATACGGTGCGGTGACGTGCA 807
Query 785 GGGTTAGGGTTAGGTACGAGCCGTCCACGTGGAGGAAGATGACGGTGCCGTGTGATGTAT 844
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 808 GGGTTAGGGTTAGGTACGAGCCGTCCACGTGGAGGAAGATGACTGTGCCGTGTGATGTAT 867
Query 845 GGAGGATAAGATCAGGTGGGTTTGCTTGGAGATTGGATGTTGAATCAGCTCTAAGGCTTG 904
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 GGAGGATTAGATCAGGTGGGTTTGCTTGGAGATTGGATGTTGAATCAGCTCTAAGGCTTG 927
Query 905 GCATGTGA 912
||||||||
Sbjct 928 GCATGTGA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5