BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40810.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947660 jgi|Araly1|947660|scaffold_703889.1 1587 0.0
Ahg484506 jgi|Araly1|484506|fgenesh2_kg.5__498__AT3G27240.1 1168 0.0
> Ahg947660 jgi|Araly1|947660|scaffold_703889.1
Length=965
Score = 1587 bits (859), Expect = 0.0
Identities = 930/965 (96%), Gaps = 1/965 (0%)
Strand=Plus/Plus
Query 120 TTGG-TACAAGTGTTCATCCAATGGTTGGAGGAGGAGTTATCCGGCAGCTTCTTAGAAGG 178
|||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 TTGGTTACAAGTGTTTATCAAATGGTTGGAGGAGGAGTTATCCAGCAGCTTCTTAGAAGG 60
Query 179 AAACTTCATTCCCAATCAGTCGCAACTCCGGTATTGTCATGGTTGTCTTCGAAGAAAGCG 238
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AAACTTCATTCCCAATCAGTCGCAACTCCGGTATTGTCATGGTTATCTTCGAAGAAAGCT 120
Query 239 AATGAAGATGCTGGGTCTGCTGGTTTAAGAGCATTTGCTCTCATGGGTGCTGGTATTACC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATGAAGATGCTGGGTCTGCTGGTTTAAGAGCATTTGCTCTCATGGGTGCTGGTATTACA 180
Query 299 GGATTATTGAGTTTTTCTACTGTTGCATCTGCTGATGAGGCTGAACATGGTCTGGAGTGT 358
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 181 GGATTATTGAGTTTTTCTACTGTTGCATCCGCTGATGAGGCCGAACATGGTTTGGAGTGT 240
Query 359 CCTAACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCGATCCGT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTAACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCGATCCGT 300
Query 419 CGTGGTCACCAAGTTTATCAGCAAGTTTGTGCGTCTTGCCATTCGATGTCTCTGATCTCA 478
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 301 CGTGGTCACCAAGTTTATCAGCAAGTCTGTGCATCTTGCCATTCGATGTCTCTGATCTCA 360
Query 479 TACCGAGACTTGGTGGGTGTTGCCTACACAGAGGAAGAGGCGAAGGCCATGGCAGCTGAA 538
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 361 TACCGAGACTTGGTTGGTGTTGCCTACACAGAGGAAGAGGCTAAGGCAATGGCAGCTGAA 420
Query 539 ATCGAGGTTGTTGATGGACCAAATGATGAGGGTGAGATGTTCACCCGACCTGGTAAACTC 598
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 421 ATTGAGGTTGTTGATGGACCAAATGATGAGGGTGAGATGTTTACCAGACCTGGTAAACTC 480
Query 599 AGTGATCGGCTTCCTGAACCATACTCAAATGAATCGGCTGCTAGGTTCGCCAATGGAGGA 658
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 481 AGTGATCGGCTTCCTGAACCATATTCAAATGAATCAGCTGCAAGGTTCGCCAATGGAGGA 540
Query 659 GCGTATCCACCGGATCTAAGTCTTGTAACTAAGGCACGTCACAATGGCCAAAATTATGTC 718
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GCGTATCCACCTGATCTAAGTCTTGTTACTAAGGCACGTCACAATGGCCAAAATTATGTC 600
Query 719 TTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGATCAGAGAGGGGCTA 778
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 601 TTTGCTCTGTTGACTGGTTACCGTGATCCTCCAGCTGGAATTTCGATCAGAGAGGGGTTA 660
Query 779 CACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCCAAAAATGCTCAACGATGAA 838
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 CACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCCAAAGATGCTCAACGATGAA 720
Query 839 GCTGTGGAATATGAAGATGGAACTCCTGCAACAGAAGCACAGATGGGTAAAGATGTTGTA 898
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 721 GCTGTGGAATATGAAGATGGAACTCCAGCAACAGAAGCACAGATGGGTAAGGATGTTGTA 780
Query 899 TCCTTCTTGTCCTGGGCAGCTGAACCAGAGATGGAAGAGAGGAAATTGATGGGGTTCAAA 958
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 781 TCATTCTTGTCCTGGGCAGCTGAACCAGAAATGGAAGAGAGAAAATTGATGGGTTTCAAA 840
Query 959 TGGATATTCTTACTGTCTTTGGCTCTGCTTCAAGCTGCGTATTACAGGAGACTGAAATGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGGATATTCTTACTGTCTTTGGCTCTGCTTCAAGCTGCGTATTACAGGAGACTGAAATGG 900
Query 1019 TCAGTACTCAAATCCCGTAAGCTTGTTCTCGACGTTGTTAACTAATCCCGTGAAGATCAC 1078
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 901 TCAGTACTCAAATCCCGTAAGCTTGTTCTCGACGTTGTCAACTAATCCCGTGAAGATCAG 960
Query 1079 CTTTT 1083
|||||
Sbjct 961 CTTTT 965
> Ahg484506 jgi|Araly1|484506|fgenesh2_kg.5__498__AT3G27240.1
Length=1417
Score = 1168 bits (632), Expect = 0.0
Identities = 872/988 (88%), Gaps = 16/988 (2%)
Strand=Plus/Plus
Query 84 TCGCCGATCTCGTTGCTTCATTTTCCTTGAGATCGATTGGTAC-AAGTGTTCATCCAATG 142
|||||||||||||||||||||||||| ||| | ||||||||| ||| ||| ||| ||||
Sbjct 80 TCGCCGATCTCGTTGCTTCATTTTCCGCGAG-TTGATTGGTACAAAGCGTTAATCAAATG 138
Query 143 GTTGGAGGAGGAGTTATCCGGCAGCTTCTTAGAAGGAAACTTCATTCCCAATCAGTCGCA 202
|||||||||||| |||||| ||| ||||||| ||||| ||||| || |||||||| |||
Sbjct 139 GTTGGAGGAGGACTTATCCAGCAAATTCTTAGGAGGAAGCTTCACTCTCAATCAGTTGCA 198
Query 203 ACTCCGGTATTGTCATGGTTGTCTTCGAAGAAAGCGAATGAAGATGCTGGGTCTGCTGGT 262
|||||||| ||||| ||||| |||||||||||||| |||| |||||||| ||| |||||
Sbjct 199 ACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAGCTCATGAGGATGCTGGCTCTTCTGGT 258
Query 263 TTAAGAGCATTTGCTCTCA-TGGGTGCTGGTATTACCGGATTATTGAGTTTTTCTACTGT 321
|||||||| |||| || | | ||||||||| |||| ||| | |||||||||||||| ||
Sbjct 259 GTAAGAGCACTTGCCCT-ATTTGGTGCTGGTGTTACTGGACTGTTGAGTTTTTCTACAGT 317
Query 322 TGCATCTGCTGATGAGGCTGAACATGG-TCTGGAGTGTCCTA-ACTACCCTTGGCCACAT 379
||| ||||||||||| ||||||||||| | |||||||||| | ||||||||||||| |||
Sbjct 318 TGCGTCTGCTGATGAAGCTGAACATGGAT-TGGAGTGTCC-AGACTACCCTTGGCCTCAT 375
Query 380 GAGGGCATTCTCAGCTCATATGACCATGCTTCGATCCGTCGTGGTCACCAAGTTTATCAG 439
|| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 376 GATGGCATTCTCAGCTCATATGATCATGCTTCGATCCGTCGTGGACATCAAGTTTATCAG 435
Query 440 CAAGTTTGTGCGTCTTGCCATTCGATGTCTCTGATCTCATACCGAGACTTGGTGGGTGTT 499
||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 436 CAAGTCTGTGCATCTTGCCATTCAATGTCTCTGATCTCTTACCGAGATTTGGTGGGTGTT 495
Query 500 GCCTACACAGAGGAAGAGGCGAAGGCCATGGCAGCTGAAATCGAGGTTGTTGATGGACCA 559
||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 496 GCCTACACAGAGGAAGAAGCAAAGGCAATGGCAGCTGAAATCGAGGTTGTAGATGGACCT 555
Query 560 AATGATGAGGGTGAGATGTTCACCCGACCTGGTAAACTCAGTGATCGGCTTCCTGAACCA 619
|||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 556 AATGATGAGGGTGAGATGTTCACCCGTCCTGGTAAACTCAGTGACCGGTTTCCTGAACCA 615
Query 620 TACTCAAATGAATCGGCTGCTAGGTTCGCCAATGGAGGAGCGTATCCACCGGATCTAAGT 679
||||| |||||||| ||||| ||||| || ||||| ||||||||||| || |||||||||
Sbjct 616 TACTCGAATGAATCAGCTGCAAGGTTTGCTAATGGGGGAGCGTATCCTCCTGATCTAAGT 675
Query 680 CTTGTAACTAAGGCACGTCACAATGG-CCAAAATTATGTCTTTGCTCTGT-TGACTGGTT 737
||| ||||||||||||||||||| || || || ||||||||||||||| | |||||||||
Sbjct 676 CTTATAACTAAGGCACGTCACAACGGTCCTAA-TTATGTCTTTGCTCT-TCTGACTGGTT 733
Query 738 ATCGTGATCCTCCTGCTGGAATTTCGATCAGAGAGGGGCTACACTACAATCCTTATTTCC 797
| |||||||| |||||||| ||||| || ||||||||| |||||||||||||||||||||
Sbjct 734 ACCGTGATCCGCCTGCTGGCATTTCAATTAGAGAGGGGTTACACTACAATCCTTATTTCC 793
Query 798 CTGGTGGAGCAATCGCTATGCCAAAAATGCTCAACGATGAAGCTGTGGAATATGAAGATG 857
|||| |||||||| |||||||| || |||||||| ||||||||||| || ||||| ||||
Sbjct 794 CTGGGGGAGCAATTGCTATGCCGAAGATGCTCAATGATGAAGCTGTTGAGTATGAGGATG 853
Query 858 GAA-CTCCTGCAACAGAAGCACAGATGGGTAAAGATGTTGTATCCTTCTTGTCCTGGGCA 916
| | || || ||||| |||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 854 GTGTCCCC-GCCACAGAGGCACAGATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCA 912
Query 917 GCTGAACCAGAGATGGAAGAGAGGAAATTGATGGGGTTCAAATGGATATTCTTACTGTCT 976
||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 913 GCTGAACCAGAAATGGAAGAGAGGAAATTGATGGGTTTCAAATGGATATTCCTACTATCT 972
Query 977 -TTGGCTCTGCTTCAAGCTGCGTATTACAGGAGACTGAAATGGTCAGTACTCAAATCCCG 1035
||| ||||||| ||||| || ||||||||| ||||||||||||| || ||||| |||||
Sbjct 973 CTTG-CTCTGCTCCAAGCAGCCTATTACAGGCGACTGAAATGGTCGGTTCTCAAGTCCCG 1031
Query 1036 TAAGCTTGTTCTCGACGTTGTTAACTAA 1063
||||| ||||| ||||| |||||||||
Sbjct 1032 CAAGCTGGTTCTTGACGTGGTTAACTAA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5