BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40830.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493897 jgi|Araly1|493897|fgenesh2_kg.7__3330__AT5G40830.2 2041 0.0
Ahg947657 jgi|Araly1|947657|scaffold_703886.1 1954 0.0
Ahg947659 jgi|Araly1|947659|scaffold_703888.1 420 2e-116
> Ahg493897 jgi|Araly1|493897|fgenesh2_kg.7__3330__AT5G40830.2
Length=1353
Score = 2041 bits (1105), Expect = 0.0
Identities = 1251/1321 (95%), Gaps = 11/1321 (1%)
Strand=Plus/Plus
Query 79 ATCCGATCATAGGTTCAACAATATGGAACA-AATTTG-GAATTGATGCAATATAAGCTAC 136
|||| || ||| |||||||||||| | ||| || ||| ||||||||||| ||||||||||
Sbjct 39 ATCCAATAATAAGTTCAACAATAT-G-ACACAA-TTGTGAATTGATGCAGTATAAGCTAC 95
Query 137 ATTGAAGTATGGGATCTGTATCGCTGAAGATTGGCGATGGAACCGCAAGATTCAAGCGAT 196
|||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct 96 ATTGAAGTATGGGATCCGTATCGCTAAAGATTGGCGATGGAAGCGCAAGATTCAAGCGAT 155
Query 197 CAACGCTTTTTTCTTCAGCTATCAACCTCCTTATGCTTTTCTCTATAGTCACTACAAATC 256
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 156 CAACGCTTTTTTCTTCCGCCATCAACCTCCTTATGCTTTTCTCTATAGTCACTACAAATC 215
Query 257 TCTTTGCACTATACGCCTTCTCGTCTCGGTCTCAATCCCACACGCCACACCCTCTTCATT 316
|||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 216 TCTTTGCATTATACGCCTTCTCGTCTCGGTCCCAATCCCACACGCCACATCCTCTTCATT 275
Query 317 CCAACAATGTCTCTTTGGTTTCTCAACATCTCTCACTCATCCTCAGAGAAATCGATTCCT 376
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 276 CCAACAATGTCTCTTTGGTTTCTCAACATCTATCACTCATCCTCAGAGAAATCGATTCGT 335
Query 377 CCCACCACACACTCACTC-AGATGGAGAAACAGATTATTGGTTATGAATCTCTCGATCTC 435
|||||| |||||| ||| | ||||||||||| || ||||||| ||||||||||||||||
Sbjct 336 CCCACCGTACACTCTCTCTA-ATGGAGAAACAAATGATTGGTTTTGAATCTCTCGATCTC 394
Query 436 TCGCAACAAGAAGTTCCACAAGAGCTTAAACTTTTCCTTCAACAACATCAGCTTCCTCTT 495
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 395 TCGCATCAAGAAGTTCCACAAGAGCTTAAACTTTTCCTCCAACAACATCAGCTTCCTCTT 454
Query 496 GGTAAAGATTCTCGTACTGGTATCACACAAATGGTTGCATCTGTTGGACATTCCTGTGAA 555
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 455 GGTAAAGATTCTCGTACTGGTATCACACATATGGTTGCATCTGTTGGACATTCCTGTGAA 514
Query 556 ATGTCTCTAGATTTGTTATCTCAGTATATGTCGTATAATGTCTTTGAAAAATGTCCTGAT 615
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 515 ATGTCTCTAGATTTGTTATCTCAGTATATGTCGTACAATGTGTTTGAAAAGTGTCCGGAT 574
Query 616 GATTGGAGCCTAGCTCAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCCACGCCGTCGA 675
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GATTGGAGCCTAGCACAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCCACGCCGTCGT 634
Query 676 TGTTTGGCTAAAACGGTGCATAA-ACCAGGTCTCGCTTTGTTTCCTGATTCTTTGTGGAG 734
|||||||||||||| || || || | | |||||||||| |||||||||||||||||||||
Sbjct 635 TGTTTGGCTAAAACAGTACAGAAGA-CGGGTCTCGCTTGGTTTCCTGATTCTTTGTGGAG 693
Query 735 ACCAGTTGGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTCGAATGCTT 794
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 ACCAGTTAGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTCGAATGCTT 753
Query 795 GAAAGGTAAGAAACTGAGCCGGGATTGTGTTGGTTGCTTTGATCTAGCTACTAGTCATGA 854
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 GAAAGCTAAGAAACTGAGCCGGGATTGTGTTGGTTGCTTTGATCTAGCTACTAGTCATGA 813
Query 855 GAAAGATAGGTTTGTTAAGGTTAATGGGAAGACTGATTTCCTGATAGATGATGTTTTGGA 914
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 814 GAAAGACAGGTTTGTTAAGGTTAAAGGGAAGACTGATTTCTTGATAGATGATGTTTTGGG 873
Query 915 TTTAGGCGATGGGAAAATCCGAATAGGATTCGATATTAGCAGTGGATCAGGTACGTTTGC 974
|||| ||||||||||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct 874 TTTAAGCGATGGGAAAATCCGAATCGGGTTTGATATTAGCAGTGGATCAGGTACATTTGC 933
Query 975 TGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAATACATTGAATATAGATGCTCC 1034
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 934 TGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAACACATTGAATATAGATGCTCC 993
Query 1035 TTTCAGCGAATTCATAGCTGCGAGAGGAATTTTTCCGTTGTTCATGAGTTTGGATCAGAG 1094
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 994 TTTCAGTGAATTCATAGCTGCGAGAGGGGTTTTTCCGTTGTTCATGAGTTTGGATCAGAG 1053
Query 1095 ATTACCGTTCTACGACAATGTTTTCGATCTCATACATGCATCTAACGGATTGGATTTAGC 1154
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1054 ATTACCGTTCTACGACAATGTTTTCGATCTCATTCACGCTTCTAACGGATTGGATTTAGC 1113
Query 1155 GGTTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAA 1214
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 GGCTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAA 1173
Query 1215 ACCCGGTGGATTGTTCTGGTTAGACAATTTCTATTGCGGTAACGATGAGAAGAAGAGAGT 1274
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1174 ACCCGGTGGATTGTTCTGGTTAGACAATTTCTATTGCGGTAATGATGAGAAGAAGAGAGT 1233
Query 1275 TCTTACGCGTTTGATAGAGAGGTTTGGGTATAAGAAGTTGAAATGGGTTGTTGGAGAGAA 1334
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1234 TCTTACGCGTTTGATAGAGCGGTTTGGGTATAAGAAGCTGAAATGGGTTGTTGGAGAGAA 1293
Query 1335 AACTGATGCT-GAGGTTTTTCTCTCGGCTGTTCTGCAAAAGCCTGCCCGGATTTGATTGA 1393
|||||||| | ||||||| |||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1294 AACTGATG-TAGAGGTTTATCTCTCGGCTGTTCTGCAGAAGCCTGCCAGGATTTGATTGA 1352
Query 1394 T 1394
|
Sbjct 1353 T 1353
> Ahg947657 jgi|Araly1|947657|scaffold_703886.1
Length=1285
Score = 1954 bits (1058), Expect = 0.0
Identities = 1201/1271 (94%), Gaps = 6/1271 (0%)
Strand=Plus/Plus
Query 127 TATAAGCTACATTGAAGTATGGGATCTGTATCGCTGAAGATTGGCGATGGAACCGCAAGA 186
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 3 TATAAGCTACATTGAAGTATGGGATCCGTATCGCTAAAGATTGGCGATGGAAGCGCAAGA 62
Query 187 TTCAAGCGATCAACGCTTTTTTCTTCAGCTATCAACCTCCTTATGCTTTTCTCTATAGTC 246
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 63 TTCAAGCGATCAACGCTTTTTTCTTCCGCCATCAACCTCCTTATGCTTTTCTCTATAGTC 122
Query 247 ACTACAAATCTCTTTGCACTATACGCCTTCTCGTCTCGGTCTCAATCCCACACGCCACAC 306
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 123 ACTACAAATCTCTTTGCATTATACGCCTTCTCGTCTCGGTCCCAATCCCACACGCCACAT 182
Query 307 CCTCTTCATTCCAACAATGTCTCTTTGGTTTCTCAACATCTCTCACTCATCCTCAGAGAA 366
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 183 CCTCTTCATTCCAACAATGTCTCTTTGGTTTCTCAACATCTATCACTCATCCTCAGAGAA 242
Query 367 ATCGATTCCTCCCACCACACACTCACTC-AGATGGAGAAACAGATTATTGGTTATGAATC 425
|||||||| ||||||| |||||| ||| | ||||||||||| || ||||||| ||||||
Sbjct 243 ATCGATTCGTCCCACCGTACACTCTCTCTA-ATGGAGAAACAAATGATTGGTTTTGAATC 301
Query 426 TCTCGATCTCTCGCAACAAGAAGTTCCACAAGAGCTTAAACTTTTCCTTCAACAACATCA 485
||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 302 TCTCGATCTTTCACATCAAGAAGTTCCACAAGAGCTTAAACTTTTCCTCCAACAACATCA 361
Query 486 GCTTCCTCTTGGTAAAGATTCTCGTACTGGTATCACACAAATGGTTGCATCTGTTGGACA 545
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 362 GCTTCCTCTTGGTAAAGATTCTCGTACTGGTATCACACATATGGTTGCATCTGTTGGACA 421
Query 546 TTCCTGTGAAATGTCTCTAGATTTGTTATCTCAGTATATGTCGTATAATGTCTTTGAAAA 605
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 422 TTCCTGTGAAATGTCTCTAGATTTGTTATCTCAGTATATGTCGTACAATGTGTTTGAAAA 481
Query 606 ATGTCCTGATGATTGGAGCCTAGCTCAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCC 665
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 482 GTGTCCGGATGATTGGAGCCTAGCACAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCC 541
Query 666 ACGCCGTCGATGTTTGGCTAAAACGGTGCATAA-ACCAGGTCTCGCTTTGTTTCCTGATT 724
||||||||| |||||||||||||| || || || | | |||||||||| |||||||||||
Sbjct 542 ACGCCGTCGTTGTTTGGCTAAAACAGTACAGAAGA-CGGGTCTCGCTTGGTTTCCTGATT 600
Query 725 CTTTGTGGAGACCAGTTGGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTT 784
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTTGTGGAGACCAGTTAGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTT 660
Query 785 TCGAATGCTTGAAAGGTAAGAAACTGAGCCGGGATTGTGTTGGTTGCTTTGATCTAGCTA 844
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TCGAATGCTTGAAAGCTAAGAAACTGAGCCGGAATTGTGTTGGTTGCTTTGATCTAGCTA 720
Query 845 CTAGTCATGAGAAAGATAGGTTTGTTAAGGTTAATGGGAAGACTGATTTCCTGATAGATG 904
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 721 CTAGTCATGAGAAAGACAGGTTTGTTAAGGTTAAAGGGAAGACTGATTTCTTGATAGATG 780
Query 905 ATGTTTTGGATTTAGGCGATGGGAAAATCCGAATAGGATTCGATATTAGCAGTGGATCAG 964
||||||||| |||| ||||||||||||||||||| || || |||||||||||||||||||
Sbjct 781 ATGTTTTGGGTTTAAGCGATGGGAAAATCCGAATCGGGTTTGATATTAGCAGTGGATCAG 840
Query 965 GTACGTTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAATACATTGAATA 1024
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 GTACATTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAACACATTGAATA 900
Query 1025 TAGATGCTCCTTTCAGCGAATTCATAGCTGCGAGAGGAATTTTTCCGTTGTTCATGAGTT 1084
|||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 901 TAGATGCTCCTTTCAGTGAATTCATAGCTGCGCGAGGGGTTTTTCCGTTGTTCATTAGTT 960
Query 1085 TGGATCAGAGATTACCGTTCTACGACAATGTTTTCGATCTCATACATGCATCTAACGGAT 1144
||||||||||||||||||||||||||||||||||||||||||| || | || |||||||
Sbjct 961 TGGATCAGAGATTACCGTTCTACGACAATGTTTTCGATCTCATTCACGGTTCCAACGGAT 1020
Query 1145 TGGATTTAGCGGTTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATC 1204
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGATTTAGCGGCTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATC 1080
Query 1205 GGATCTTGAAACCCGGTGGATTGTTCTGGTTAGACAATTTCTATTGCGGTAACGATGAGA 1264
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1081 GGATCTTGAAACCCGGTGGATTGTTCTGGTTAGACAATTTCCATTGCGGTAATGATGAGA 1140
Query 1265 AGAAGAGAGTTCTTACGCGTTTGATAGAGAGGTTTGGGTATAAGAAGTTGAAATGGGTTG 1324
|||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1141 AGAAGAGAGTTCTTACACGTTTGATAGAGCGGTTTGGGTATAAGAAGTTAAAATGGGTTG 1200
Query 1325 TTGGAGAGAAAACTGATGCT-GAGGTTTTTCTCTCGGCTGTTCTGCAAAAGCCTGCCCGG 1383
|||||||||||||||||| | ||||||| |||||||||||||||||| ||||||||| ||
Sbjct 1201 TTGGAGAGAAAACTGATG-TAGAGGTTTATCTCTCGGCTGTTCTGCAGAAGCCTGCCAGG 1259
Query 1384 ATTTGATTGAT 1394
|||||||||||
Sbjct 1260 ATTTGATTGAT 1270
> Ahg947659 jgi|Araly1|947659|scaffold_703888.1
Length=371
Score = 420 bits (227), Expect = 2e-116
Identities = 341/391 (87%), Gaps = 28/391 (7%)
Strand=Plus/Plus
Query 828 TTGCTTTGATCTAGCTACTAGTCATGAGAAAGATAGGTTTGTTAAGGTTAATGG-GAAGA 886
|||||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||
Sbjct 1 TTGCTTTGATCTAGCTGCTACTCATGAGAAAGATAGGTTTGTTAAGGTTAAAGGTGAAGA 60
Query 887 CTGATTTCCTGATAGATGATGTTTTGGATTTAGGCGATGGGAAAATCCGAAT-AGGATTC 945
||||||| | || || ||||| |||||||||||||||| ||| |||
Sbjct 61 CTGATTT-C--------------TT-GA--TAGGCCATGGGAAAATCCGAATCAGG-TTC 101
Query 946 GATATTAGCAGTGGATCAGGTACGTTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATA 1005
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 102 GATATTAGCAGTGGATCAGGTATATTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATA 161
Query 1006 ATCAGTAATACATTGAATATAGATGCTCCTTTCAGCGAATTCATAGCTGCGAGAGGAATT 1065
||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||| |||
Sbjct 162 ATCAGTAATACATTGAATAAAGATGCTTCTTTCAGCGAATTCGTAGCTGCGCGAGGGATT 221
Query 1066 TTTCCGTTGTTCATGAGTTTGGATCAGAGATTACCGTTCTACGACAATGTTTTCGATCTC 1125
|||||||||||| ||||||| || || |||||||||||||| ||||||||||| ||||||
Sbjct 222 TTTCCGTTGTTCTTGAGTTTAGACCATAGATTACCGTTCTATGACAATGTTTTTGATCTC 281
Query 1126 ATACATGC-A-T-CT---AACGGATTGGATTTAGCGGTTAGTAATAAACCCGAGAAGCTG 1179
|||||||| | | || || ||||||||| ||| || ||| ||||||||||||||||||
Sbjct 282 ATACATGCTAATGCTTCTAATGGATTGGATATAGGGGCTAG-AATAAACCCGAGAAGCTG 340
Query 1180 GAGTTCTTGATGTTTGATCTTGATCGGATCT 1210
|||||||||| ||||||||||||||||||||
Sbjct 341 GAGTTCTTGAAGTTTGATCTTGATCGGATCT 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5