BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40840.2
Length=2684
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493894 jgi|Araly1|493894|fgenesh2_kg.7__3327__AT5G40840.1 3960 0.0
> Ahg493894 jgi|Araly1|493894|fgenesh2_kg.7__3327__AT5G40840.1
Length=2645
Score = 3960 bits (2144), Expect = 0.0
Identities = 2516/2689 (94%), Gaps = 52/2689 (2%)
Strand=Plus/Plus
Query 1 CTCGCTGCTCTCTTaaaaaaaaCTAACCTTTGTCTAAAACCCAGAATCTGGTAAACCTTC 60
||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3 CTCTCTGCTCTCAAAAAAAAAACTAACCTTTGTCTAAAACCCAGAATCTGGGAAACCTTA 62
Query 61 ACACTCAAAAATGTTTTACTCGCATTGTCTAGTATCGAGAAAAGGACCTTTAGGAGCTAT 120
| || |||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 63 AGAC-AAAAAATGTTTTACTCGCAATGTCTCGTATCGAGAAAAGGACCTTTAGGAGCTAT 121
Query 121 TTGGGTCGCTGCCTATTTCTTCAAAAAGCTTAAGAAATCTCAAGTCAAAGCTACTCATAT 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 122 TTGGGTCGCTGCCTATTTCTTCAAAAAGCTTAAGAAAGCTCAAGTCAAAGCTACTCATAT 181
Query 181 TCCTTCTTCCGTTGATCAAATCTTGCAAAAAGAGTTAGATGCGTTGACATACAGAGTTTT 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCCTTCTTCCGTTGATCAGATCTTGCAAAAAGAGTTAGATGCGTTGACATACAGAGTTTT 241
Query 241 GGCGTATCTTCTTCTTGGTGTTGTAAGGATATATTCCAAGAAGGTTGACTTTTTGTTCGA 300
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 242 AGCGTATCTTCTTCTGGGTGTTGTAAGGATATATTCCAAGAAGGTGGACTTTTTGTTTGA 301
Query 301 TGATTGCAATAAAGCGTTGATCGGTGTAAAGGAGTTTGTGGCTAAGGA-AAGGAACAGAG 359
||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 302 TGATTGCAACAAAGCGTTGATCGGTGTTAAGGAGTTTGTGGCTAAGGAGAA-GAACAGAG 360
Query 360 AAAAGACAGGTGTATCATTGCCTGCATCTATCGAGTGTTTTTCCATTGCTTTACCTGAGA 419
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 361 AAAAGACAGGTGTTTCATTGCCTGCATCTATCGAGTGTTTTTCCATTGCTTTGCCTGAGA 420
Query 420 GATTTGAACTAGATGCTTTTGATCTTGGGGTTCTGGAGGATTTTCATGGGGGAAATGTTA 479
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 421 GATTTGAACTAGATGCTTTTGATCTTGGGATTTTGGAGGATTTTCATGGGGGAAATGTTA 480
Query 480 AGCCGCATGAAGATATTACACTTAAAGATGGAAGTCAGGAAACAGAGCGCATGGACATGT 539
||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||||||
Sbjct 481 AGCCGCAGGAAGATATTACACTTAAAGATGGAAGTCCGGAACCAGAGAGCATGGACATGT 540
Query 540 ATTCGATGGAAAGGTTTGACATGGAAGAGGACCTTCTGTTTACGTTTCATGAGACTTTCT 599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATTCAATGGAAAGGTTTGACATGGAAGAGGACCTTCTGTTTACGTTTCATGAGACTTTCT 600
Query 600 CTACCAATCATAATGAAAATAAACATGAGAGTTTTGCTCATGATATGGA-ATTGGATGCA 658
|| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 601 CTGCCAATCATAATGAAAATAAACATGAGAGTTTTGCTCATGATATGGACA-TGGATGCA 659
Query 659 GAAAATGTCAGAGATACCACTGAAGAAGCATCCGTCAGAGTCGTTGAAGCGGAACCACTG 718
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 GAAAATGTCAGAGATACTACTGAAGAAGCATCGGTCAGAGTCGTTGAAGCGGAACCACTG 719
Query 719 GATTCTAATGAACCATCCAGAGATCATCAAAATGCATCTAGGCATAGAGAGGATCCAGAA 778
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 720 GATTCTAATGAACCATCCAGAGATCATCAAAATGCATCCAGGCATAGAGAGCATCCAGAA 779
Query 779 TCAGATGACATTCTTCTGGAACCGCAAATGTCCGAAGATATCCGAATAGCTCAAGAAGAA 838
||||||||||||||| ||||||||| |||||| ||||||||| ||| |||||||||||||
Sbjct 780 TCAGATGACATTCTTGTGGAACCGCGAATGTCTGAAGATATCAGAAGAGCTCAAGAAGAA 839
Query 839 GATACAGTTAGAGAAACCATATGTACCATTGTGCAGAGACTAGTGGATTCTCATGAATCC 898
|| ||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 840 GACACATTTAGAGAAACCATATCTACTATTGTGCAGAGACTAGTGGATCCTCATGAATCC 899
Query 899 TCAGGAGATAATCTACACAGAGATGGTCACACAGAGAATTTAGAATCGGAGAAAACCTCG 958
||||| |||||||||| |||||||||||||| ||||||||||||||| | |
Sbjct 900 TCAGGCGATAATCTACGCAGAGATGGTCACATAGAGAATTTAGAATC---G--------G 948
Query 959 AAGAAAACAAGTTGCGAAGAGATGCAGCATGACA-GGTCCCTCCCATCTGAATGCGGAAT 1017
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| ||
Sbjct 949 -AGAAAACAAGTTGCGAAGAAATGCAGCATGA-AGGGTCCCTCCCATCTGAATGCGTAAG 1006
Query 1018 ACCTGAAGCAATTCATGGGATTGAGGATCAACCTTCTGGTGCCACAAGAATTAATGGGGA 1077
||||||||| ||||| ||||||||||||||| || | ||||||||||||||||||||||
Sbjct 1007 ACCTGAAGCGATTCACAGGATTGAGGATCAACTTTGTAGTGCCACAAGAATTAATGGGGA 1066
Query 1078 GAAGGAGATCCCTGAGATGAGTACTCTAGAAAAACCAGAACCAGTATCTGTGACTGGTTC 1137
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1067 GAAGGAGATCCCGGAGATGAGTACTCTAGAAGAACCAGAACCAGTATCTGTGACTGGTTC 1126
Query 1138 CAGAGACTTGCAAGAAGGCGTAGAAAAATGTCGAGACCATAATGAAGCGGAAATGGCAGA 1197
|||||||| || |||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1127 CAGAGACTCGCCAGAAGGCGTAGAGAAATGTCGAGACCATAATGAAGCGGAAATGGGAAA 1186
Query 1198 CTTTGAATTGTTTCATGGGTCTCATAAAGAGCAATCTGAAACTTCTGAAGTGAATCTCCA 1257
|||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1187 CTTTGAGTTGCTTCATGGGTCTCATAAAGAGCAATCTGATACTTCTGAAGTGAATCTCCA 1246
Query 1258 TGGTTCCGAGAAAGGTTTTCTCTCTGACATGACTGTTTCTAAAGACCCTAGTAGCGAATT 1317
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1247 TGGTTCCGAGAAAGGTTTTCTCTCTGACATGACTGTTTCAAAAGACCCTAGTAGAGGGTT 1306
Query 1318 TAATGCAACAGATACTCCAGTTACTGTCACTCCCAAAACACCTTCCCGGTTGAAAATTTC 1377
||||||| |||||||||||||| |||||||||||||||||||||| ||| || |||| ||
Sbjct 1307 TAATGCAGCAGATACTCCAGTTGCTGTCACTCCCAAAACACCTTCGCGGGTGCAAATCTC 1366
Query 1378 TGAAGGGGGAACAAGTCCACAGTTCTCGATCATCCCTACGCCGGCTGCGAAGGAGTCTTC 1437
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1367 TGAAGGGGGAACAAGTCCTCAGTTCTCGATCATCCCTACACCGGCTGCAAAGGAGTCTTC 1426
Query 1438 TCGAGTTTCACGGAAAAGAAAATGTCTGATAGATGATGAAGTGATAATTCCGAACAAAGT 1497
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1427 TCGAGTTTCACGGAAAAGAAAATGTCTGATAGATGATGAAGTGCTAATTCCAAACAAAGT 1486
Query 1498 TATGAAGGAAATGATAGAGGACTCAAGTAAATTGCTTGCAAAACGGAGAAACGTACCTCA 1557
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1487 TATGAAGGAAATGATAGAGGACTCAAGTAAATTGCTTGCAAAACGGAAAAACGTACCTCA 1546
Query 1558 TACTGACTGTCCTGAGAGGAGAACCAAACGTTTTGCCAATCCTTTTCGAAGTTTTTTGGA 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1547 TACTGACTGTCCTGAGAGGAGAACCAAACGTTTTGCCAATCCTTTTCGAAGTTTCTTGGA 1606
Query 1618 ACCTTTGATTCAGTATGGTTCTTCGGACCTCCAGTCGCTTTTTTGTCAACCCATCAAGCT 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 ACCTTTGATTCAGTATGGTTCTTCGGACCTCCAGTCGCTTTTTTGTCAACCCATCAAGCT 1666
Query 1678 TAAAAACTGGGCAACCACAGGAACCCCTAAAGATACTAAAATCGCTAGACATAAGGAAAA 1737
|||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 1667 TAAAAACTGGGCAACCACAGGAACTCCTAAAGATGCTAAAATCGCTAGACGTAAGGAAAA 1726
Query 1738 GTCTTCTCTTGACACTGTCAGATCTCCTGGGGTTATTTTATCTTCAGATCAGACTGAGAA 1797
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1727 TTCTTCTCTTGACACCGTCAGAACTCCTGGGGTTATTTTATCTTCAGATCAGACTGAGAA 1786
Query 1798 TACTCAAGAAATTATGGAGACTCCTCAGGCTGCTGCTCTCGCTGGGCTGAAAGTGACAGC 1857
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1787 TACTCAAGAAATTATGGAGACTCCTCAGGCTGCTGCTCTTGCTGGGCTGAAAGTGACAGC 1846
Query 1858 CGGAAATAGTAACGTGGTTTCGGTTGAGATGGGAGCAAGTTCTACAACTTCTGGAACTGC 1917
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1847 CGGAAATAGTAACATGGTTTCGGTTGAGATGGGAGCAAGTTCTATGACTTCTGGAACTGC 1906
Query 1918 TCATCAAACAGAAAATGCCGCAGAGACACCTGTGAAGCCTTCAGTTATTGCTCCAGAAAC 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TCATCAAACAGAAAATGCCGCAGAGACACCTGTGAAGCCTTCAGTTATTGCTCCAGAAAC 1966
Query 1978 ACCCGTGAGGACATCAGAGCAAACAGTGATTGCTCCAGAAACACCAGTAGTCTCTGAGCA 2037
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1967 ACCCGTGAGGACATCAGAGCAAACAGAGATTGCTCCAGAAACACCAGTGGTCTCTGAGCA 2026
Query 2038 AGTAGAGATTGCACCTGAAACGCCGGTGAGGGAATCAATGTCGAAAAGATTTTTCAAGGA 2097
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2027 AGTAGAGATTGCACCTGAAACGCCAGTGAGGGAATCAATGTCGAAAAGATTTTTCAAGGA 2086
Query 2098 CCCTGGGACCTGTTATAAAAAATCCAGACCTGCAAGTCCCTTCACTTCCTTTGAGGAGCA 2157
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2087 CCCTGAGACCTGTTATAAAAAATCCAGACCTGCAAGTCCCTTCACTTCCTTTGAGGAGCA 2146
Query 2158 CCCGTCTGTGTATTATGTGGAAAATAGAGATCTTGATACGATTTTAATGAACGATGAGCA 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2147 GCCGTCTGTGTATTATGTGGAAAATAGAGATCTTGATACGATTTTAATGAACGACGAG-- 2204
Query 2218 GGTGAATGCAGATGAAAGACAGGACTTACAACAAGAGACATGGTCCTCAAGAACAAGGAA 2277
| ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 2205 G-TGAATGCAGATGAAACACACGACTTGCAACAAGAGACATGGTCAGCAAGAACAAGGAA 2263
Query 2278 TGTGGCGAAATTCTTGGAAAAGACGTTTTTGGAACAGAGGGAAAGAGAAGAAGAAGAGAA 2337
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 2264 TGTGGCGAAATTCTTGGAAAAGACGTTTGTGGAACAGAGGGAAAGAGAAGAAGAAGAAAA 2323
Query 2338 GGTGAGTTTGTTGCAACTGTGTAGAGGAAGAACTCAGAAGGAAAGCGCAAGACTCTTCTA 2397
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2324 GGTGAGTTTGTTGCAACTGTGTAGAGGAAGAACTCAGAAGGAAAGCGCAAGCCTCTTCTA 2383
Query 2398 CGAGACTTTGGTGTTGAAGACCAAAGGATACGTGGAAGTGAAGCAAAATCATCCATATAG 2457
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2384 CGAGACTTTGGTGTTGAAGACCAAAGGATACTTGGAAGTGAAGCAAAATCGTCCATATAG 2443
Query 2458 TGATGTTTTTCTCATGCGTGTTTC-C-AGACCACAAAAAGCTTGTTGAAAAATGGATATT 2515
||||||| |||||| || || | | |||| ||||||||||||||||||||||| | |
Sbjct 2444 TGATGTTCTTCTCACGCCA-TT-CGCTAGACAACAAAAAGCTTGTTGAAAAATGG-T-T- 2498
Query 2516 TTCTTCACTTAAGATTTTCCTCAGATTTCTTCAGTTAGGTTTCAGATTAATGTTGTTAGC 2575
| | | | |||||||||| |||||||||||||||| || |||||
Sbjct 2499 --C--C--T---------C---AGATTTCTTCGGTTAGGTTTCAGATTAGTGCTGTTAAA 2540
Query 2576 TTTTAGTATCTTCTAACAAAATAGCTAtttttagtttttcttttaagttaatttttaGTA 2635
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2541 TTTTAGTATCTTCTAACAAAATAGCAATTTTGAGTTTTTCTTTTAAGTTAATTTTTAGTA 2600
Query 2636 A-GAATAATTGACGATCTAAAGTATATGTGTCTTATCAAGTTTTTAAGT 2683
| |||||||||||||||| || |||| ||||||||||||||||||
Sbjct 2601 AAGAATAATTGACGATCTTT--TAGATGT--CTTATCAAGTTTTTAAGT 2645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101243871210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5