BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40850.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493893 jgi|Araly1|493893|fgenesh2_kg.7__3326__AT5G40850.1 2390 0.0
> Ahg493893 jgi|Araly1|493893|fgenesh2_kg.7__3326__AT5G40850.1
Length=1742
Score = 2390 bits (1294), Expect = 0.0
Identities = 1545/1661 (93%), Gaps = 38/1661 (2%)
Strand=Plus/Plus
Query 2 AGCAAAAATGCTACAAATTAAAAAGTGTCTCCAACATGTGCATA-TT-C---A-CACACA 55
||||||||| ||||||||| |||| |||||| |||||||||||| || | | ||||||
Sbjct 1 AGCAAAAATCCTACAAATT-AAAA-TGTCTCTAACATGTGCATATTTGCAAAAGCACACA 58
Query 56 AGTTGGTGTCAACGCT-CA-----G-ACAAGAAAGGCGTGTGTTCATTGTTGAATCTTCC 108
|||||||||||||||| || | | ||| |||||||||||||||||||||||||||
Sbjct 59 AGTTGGTGTCAACGCTCCACTTTTGTGC-AGACAGGCGTGTGTTCATTGTTGAATCTTCC 117
Query 109 CATTTCCTCATCCAAATTCCGACATAACT-ATCCTAGCCGCCATTTGTTCTCCACATTAC 167
||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||
Sbjct 118 CATTTCCTCATCCAAATTCCGACATAACTCCTCTTGGCCGCCATTTGTTCTCCATATTAC 177
Query 168 AAAACCCTCAGCAGCTTCAAAACTCTTCCGATCTCTCCCTC-ACGCTCGCAATTCTCTCG 226
|||||||||||||||||||||||||||||||||||| | || |||| ||||||||||||
Sbjct 178 AAAACCCTCAGCAGCTTCAAAACTCTTCCGATCTCT-CTTCGACGC-CGCAATTCTCTCA 235
Query 227 TCTCCATTTTAATAGTTTTTCTTCTCGGAATCACAAATCTTCGGCTTCTTGTTCC-T--T 283
|||||||||| |||| ||||| ||||||| ||||||||| |||||||||||||| | |
Sbjct 236 TCTCCATTTTTATAG--TTTCTGCTCGGAACCACAAATCTCCGGCTTCTTGTTCCGTGGT 293
Query 284 G-GCgtgtgtg-tg-t-gtTGTTGAATGGCTCTTGTTCAGCGGATTCCAATTTCCTCCTC 339
| | ||||||| || | ||| ||||||||||||||| ||| ||||||| |||||||||||
Sbjct 294 GAGTGTGTGTGTTGTTGGTTATTGAATGGCTCTTGTCCAGAGGATTCCCATTTCCTCCTC 353
Query 340 CAGTATTCGGAATTGGCAACAAGCGAGGACCAATTTGACTCCTATTTGTTGTTTACATTA 399
||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||
Sbjct 354 TAGTGTTCGGAATTGGCAACAAGCTAGGACCAATTCCACTCCTATTTGCTGTTTACATTA 413
Query 400 CAATACTGCATCTTCTTCTTCTTCACCCTTTACAGAGAAGCACTCTGTGGAGAGATACCA 459
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 414 CAATACTGCA---TCTTCTTCTTCACCCTTTACAGAGAAGCACTCTGTCGAGAGATACCA 470
Query 460 AAGGGATCAATGGCTGTACAAAGCGGTTGAACCAACGCCACCATCGACTCCATCTCCATC 519
|||||||||||||| ||||| || |||||||| || |||||||||||||||||||||||
Sbjct 471 GAGGGATCAATGGCTCTACAAGGCAGTTGAACCCACACCACCATCGACTCCATCTCCATC 530
Query 520 GCCATTTGAAGATGAAGTCTTTGTTAGGGAAAACGACATTGCATCGCAGCTGCCTGAGCT 579
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GCCATTCAAAGATGAAGTCTTTGTTAGGGAAAACGACATTGCATCGCAGCTGCCTGAGCT 590
Query 580 GAAGAAGCTTTTGGCAGTGCTGAAAGAGAAGAGAGTTAAAGGATGCAAAGGTGGTGATTG 639
||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 591 GAAGAAGCTCTTGGCTGTGCTGAGAGAGAAGAGAGTTAAAGGCTGCAAAGGTGGTGATTG 650
Query 640 TGGACCAGGAGATGTGTATCTTGTTGGGACAGGGCCAGGAGATCCTGAGCTTTTGACTCT 699
|||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 651 TGGACCGGGGGATGTGTATCTGGTTGGGACAGGACCAGGAGATCCTGAGCTTTTGACTCT 710
Query 700 TAAAGCTGTCAGAGTTATTCAAAGTGCCGATCTTTTGCTTTACGACAGGCTTGTCTCCAA 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 711 TAAAGCTGTCAGAGTTATTCAAAGTGCCGATCTTTTGCTTTACGACAGGCTTGTTTCCAA 770
Query 760 TGATGTCTTGGAGTTGGTTGCTCCTGATGCTAGACTTCTTTATGTCGGCAAAACTGCTGG 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGATGTCTTGGAGTTGGTTGCTCCTGATGCTAGACTTCTTTATGTCGGCAAAACTGCTGG 830
Query 820 TTATCATAGCAGAACTCAGGAAGAGATTCATGAACTACTCCTAAATTTTGCTGAAGCTGG 879
|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 831 TTATCATAGCAGAACTCAGGTAGAGATTCATGAACTACTCCTAAGTTTTGCGGAAGCTGG 890
Query 880 TGCCACTGTTGTCAGGCTTAAAGGTGGAGATCCTCTGGTCTTTGGACGGGGCGGCGAAGA 939
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 891 TGCCACTGTTGTCAGGCTTAAAGGTGGAGATCCTCTGGTCTTTGGACGGGGCGGGGAAGA 950
Query 940 AATGGACTTTCTGCAACAGCAAGGGATTCGAGTTCAAGTTATACCAGGGATAACTGCGGC 999
|||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 951 AATGGACTTTCTACAACAACAAGGGATTCGAGTTCAAGTTATCCCAGGGATTACTGCGGC 1010
Query 1000 GTCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGAGGTGTTGCAACTAGTGT 1059
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1011 ATCGGGGATAGCAGCAGAGTTGGGGATTCCACTAACACATCGCGGTGTTGCAACTAGTGT 1070
Query 1060 AAGGTTTCTCACTGGTCATTCAAGGAAAGGAGGGACAGACCCTCTGTTTGTTGCAGAGAA 1119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 AAGGTTTCTCACTGGTCATTCAAGGAAAGGAGGGACCGACCCTCTGTTTGTTGCAGAGAA 1130
Query 1120 TGCAGCTGACCCGGATACAACACTTGTCGTTTATATGGGTTTGGGAACTTTACCTTCTCT 1179
||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1131 TGCAGCTGATCCGGACACAACACTCGTTGTTTATATGGGTTTGGGAACCTTACCTTCTCT 1190
Query 1180 TGCACAAAAACTAATGGACCATGGTCTCCCTTCTGATACACCAGCTGTTGCGGTTGAACG 1239
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1191 TGCACAAAAACTAATGGACCATGGTCTCCCTTGTGATACACCAGCTGTTGCGGTCGAACG 1250
Query 1240 TGGAACCACTCCTCTACAGCGTACAGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGAT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TGGAACCACTCCTCTACAGCGTACAGTTTTTGCTGAGCTTAAAGATTTTGCAACTGAGAT 1310
Query 1300 TCAGTCAGCTGGATTGGTGTCACCAACACTCATCATCATAGGGAAAGTCGTTGAGCTCTC 1359
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1311 TCAGTCAGCTGGATTGGTGTCACCAACGCTCATCATCATAGGGAAAGTCGTCGAGCTCTC 1370
Query 1360 ACCTTTATGGCCACATTGCACGAAAGAATCCTCCTGCCTTGTAGAGACCCGGTAGATATT 1419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 GCCTTTATGGCCACATTGCACGAAAGAATCCTCCTGCCTTGTAGAGACCCGGTAGATATT 1430
Query 1420 TCACTCTTATTTTACGGG-CGTGTGGCTTCCATCGACATTACGGTGAAGTTTTAGGAGCT 1478
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1431 TCACTCTTATTTTACGGGTCA-GTGGCTTCCATCGACATTACGGTGAAGTTTTAGGAGCT 1489
Query 1479 ATGGAGCTATGAAGGTTGAGACTTGAGAGATGTAATAAACAAAAAGGAAAGCTGATAGTT 1538
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 1490 ATGGAGCTATGAAGGTTGAGACTTGAGAGATGTAATACACAAAAAGGAAAGCTTATATTT 1549
Query 1539 TCTTATGACGT----GTCCTTCAATTGTTTTGGGACAATGGTAATGGCAATGTTAATGTA 1594
|||||| | || ||||||||||| |||| |||||||| ||||||| ||||||||||
Sbjct 1550 TCTTATCATGTCCCTGTCCTTCAATTCTTTTTGGACAATGCCAATGGCATTGTTAATGTA 1609
Query 1595 ATAAACAAGTTTCAATCAGTGCCACTGTGACTAATTTTTCC 1635
||||||||||||||||| |||||| ||||||||| ||||||
Sbjct 1610 ATAAACAAGTTTCAATCTGTGCCATTGTGACTAAATTTTCC 1650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67153101935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5