BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40855.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939906 jgi|Araly1|939906|scaffold_600450.1                        204    3e-52
  Ahg493892 jgi|Araly1|493892|fgenesh2_kg.7__3325__AT5G40855.1         202    1e-51


> Ahg939906 jgi|Araly1|939906|scaffold_600450.1
Length=1626

 Score =  204 bits (110),  Expect = 3e-52
 Identities = 139/152 (91%), Gaps = 5/152 (3%)
 Strand=Plus/Minus

Query  84   ACTTCTCCATTTCACAATACTGCTTCACCTGGACA-CTTGTCACACTTTCCTTGTGCCCA  142
            |||| ||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct  435  ACTT-TCCATTTCACAATACTGCTTCACCTGGGCAACT-GTCACACTTTCCTTGTGCCCA  378

Query  143  AGAGATATGACCTCGTCAAATGCAAATATCAGCTCAAAAGTAGCCCTGCCAAAATCCCTT  202
            ||||||||||| || ||||||||||||||||||||||||| |||||||  ||| ||||||
Sbjct  377  AGAGATATGACTTCATCAAATGCAAATATCAGCTCAAAAGAAGCCCTGG-AAA-TCCCTT  320

Query  203  GTTCATCTAAAGACATGGAAGACTCATGTACA  234
             ||||||||||||||||||| ||||| |||||
Sbjct  319  CTTCATCTAAAGACATGGAATACTCAGGTACA  288


> Ahg493892 jgi|Araly1|493892|fgenesh2_kg.7__3325__AT5G40855.1
Length=195

 Score =  202 bits (109),  Expect = 1e-51
 Identities = 136/149 (91%), Gaps = 1/149 (1%)
 Strand=Plus/Plus

Query  89   TCCATTTCACAATACTGCTTCACCTGGACACTTGTCACACTTTCCTTGTGCCCAAGAGAT  148
            |||||||||||||||||||||||||  |||  |||||||||||  |||||||||||||||
Sbjct  23   TCCATTTCACAATACTGCTTCACCTCAACAAGTGTCACACTTTTATTGTGCCCAAGAGAT  82

Query  149  ATGACCTCGTCAAATGCAAATATCAGCTCAAAAGTAGCCCTGCCAAAATCCCTTGTTCAT  208
            ||||| || |||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct  83   ATGACTTCATCAAATGCAAATATCAACTCAAAAGCAGCCCTGCCAAA-TCCCTTGTTCAT  141

Query  209  CTAAAGACATGGAAGACTCATGTACATAG  237
            |||||||||||||||||||||| || |||
Sbjct  142  CTAAAGACATGGAAGACTCATGCACCTAG  170



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5