BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40860.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493891 jgi|Araly1|493891|fgenesh2_kg.7__3324__AT5G40860.1 841 0.0
> Ahg493891 jgi|Araly1|493891|fgenesh2_kg.7__3324__AT5G40860.1
Length=707
Score = 841 bits (455), Expect = 0.0
Identities = 544/586 (93%), Gaps = 9/586 (2%)
Strand=Plus/Plus
Query 261 GGAGAATTTAGCTCCGGTGGCTACTCCGAAGACGGTGGATAATGGTTTAAGTGCTCAAGT 320
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 128 GGAGAATTTAGCTCCGGCGGCTACTCCGATGACGGTGGCTAATGGTTTAAGTGCTCAAGC 187
Query 321 GAAATCTCGGTGGTCGTTTTCTTCTTCTAAGAGAAGCTTTGGAAGTAGTAAAGATGAAAC 380
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GAAATCTCGATGGTCGTTTTCTTCTTCTAAGAGAAGCTTTGGAAGTAGTAAAGATGAAAC 247
Query 381 CTATTTTGATTCACATCAATGGCAACAATCTGATTCTGAAGACGATTTCTATAGCGTTCG 440
|| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 248 CTTTTTTGATTCACAACAATGGCTACAATCTGATTCTGAAGACGATTTCTACAGCGTTCA 307
Query 441 TGGCGATTTCACTCCATCAGTTGGAAACACTCC-AAGGTGTAGTATCTCAGAGAAGCTTC 499
||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||
Sbjct 308 TGGCGATTTCACTCCATCACTTGGAAACACTCCGAAG-TGTAGTTTCTCAGAGAAGCTTC 366
Query 500 CTCGTATTCACAGCCCTTTATTTGAAGGAGAGAAACCTCGAGTATCGTTTTCGCATTCTC 559
||||| |||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 367 CTCGTTTTCACAACCCTTTATTCGAAGGAGAGAAGCCTCGAGTATCGTTCTCGCATTCTC 426
Query 560 CTGCACCGCGGAGAAAGAAACTAGGCGAACTATTTAGAGATAGTATAAGAGAAGAACGAG 619
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 427 CTGCACCGCGGAGGAAGAAACTAGGCGAACTATTTGGAGATAGTATAAGAGAAGAACGAG 486
Query 620 CAGTAAT-TTTAGAAGAGTCATCGGAATACCAAAGTGaaaaaagtaaaaaaTCATCATGT 678
|| || ||| ||||||||| | ||| ||||||||||||| ||||||||||||||| ||
Sbjct 487 -AGGAAAATTTGGAAGAGTCAACAGAAAACCAAAGTGAAAAGAGTAAAAAATCATCAGGT 545
Query 679 GATAA-TTCGGGTGAGCTCAAAGTCATTGAAGAATCTGTAAAAGAGAAGAAGAATCTTAA 737
||||| || || ||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 546 GATAACTTTGG-TGAGCTCAAAGTCATTGAAGATTCTGTAGAAGAGAAGAAGAATCTTAA 604
Query 738 ATCTCCTCTGAATTATCACCATCGTTGTCTTCCGAGATTCTCGTCTTTTAAAGGAAGTTT 797
|||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 ATCT--T-TGAACTATCACCATCGTTGTCTTCCGAGATTCTCGTCTTTTAAAGGAAGTTT 661
Query 798 AATGGACaagagaaagaagaagaagaagaaAATTCATGTGAAATGA 843
|||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 662 AATGGAGAAGAGAAGGAAGAAGAAGAAGAAAATTCATGTGAAATGA 707
Score = 128 bits (69), Expect = 6e-29
Identities = 93/104 (89%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 80 AAAAGCTCGTGAGATC-GCCCACTATGATAAGCCACGACTCGTTTCCGATGAATAATTCG 138
|||||||||||| | | |||||||||||||||| | ||||| || ||| |||||||||||
Sbjct 16 AAAAGCTCGTGA-AACTGCCCACTATGATAAGCAATGACTCATTGCCGGTGAATAATTCG 74
Query 139 CCGGTGACGGCGGAGGAGAACGGTGGTGTTACGGAAAAATCCAT 182
|||||||||||||||||||| | |||||||||||||||| ||||
Sbjct 75 CCGGTGACGGCGGAGGAGAATGTTGGTGTTACGGAAAAA-CCAT 117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5