BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40870.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493890 jgi|Araly1|493890|fgenesh2_kg.7__3323__AT5G40870.1 2739 0.0
Ahg936446 jgi|Araly1|936446|scaffold_500637.1 1530 0.0
Ahg896655 jgi|Araly1|896655|Al_scaffold_0005_621 340 2e-92
> Ahg493890 jgi|Araly1|493890|fgenesh2_kg.7__3323__AT5G40870.1
Length=1845
Score = 2739 bits (1483), Expect = 0.0
Identities = 1740/1859 (94%), Gaps = 37/1859 (2%)
Strand=Plus/Plus
Query 1 CGTTGAACAGAATCGTTGTCACTTGTTCAGTCTTCACTACGGAGCTGttttttttCGATT 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 CGTTGAACAGAATCGTTGTCACTTG-TCAGTCTTCACTACGGAGCTGTTTTTTTTCGATT 59
Query 61 CGCCGGAAAAATCATAAAATCCAAA-TCTACAACCACCTTTTTATCGCAATCCAATGCCG 119
|||||||||||||| ||| | |||| ||| |||||||| || |||| ||||||||||||
Sbjct 60 CGCCGGAAAAATCACAAATTTCAAATTCTGCAACCACCGATTCATCGGAATCCAATGCCG 119
Query 120 GAAGATTCTTCTTCTTTAGACTACGCGATGGAGAAGGCATCAGGGCCTCACTTCTCCGGT 179
|| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 GAGGATTCTTCTTCAATAGACTACGCGATGGAGAAGGCATCGGGGCCTCACTTCTCCGGT 179
Query 180 CTTCGCTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGTCG--TC-T--C-- 232
|||||||||||||||||||||||||||||||||||||||||||||| || || | |
Sbjct 180 CTTCGCTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCCGCCGTCTCTTCACTT 239
Query 233 T-TCA-CTCCGATCAGCTGTTTCTTCTTCTTCTCCGTCTTCTTCCGATCCCGAAGCGCCT 290
| ||| ||||||||||| |||||||| ||||||||| |||||||||||||||| || ||
Sbjct 240 TCTCACCTCCGATCAGCCGTTTCTTCCTCTTCTCCGGCTTCTTCCGATCCCGACGCTCCC 299
Query 291 AAGCAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAGACCACGGTCTGT 350
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 300 AAACAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTAAAACCACAGTCTGC 359
Query 351 GACATGATAATCCAGCAACTTCATGACCATCGTGTCGTTTTAGTTAATCAGGATTCCTTT 410
|| ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct 360 GATATGATAATCCAGCAACTTCATGATCATCGTGTTGTTCTAGTTAATCAGGATTCCTTT 419
Query 411 TATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTATAACTTTGATCATCCT 470
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTACAACTTTGATCATCCC 479
Query 471 GATGCGTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCAAGAGCGGGCAACCC 530
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATGCTTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCAAGAGCGGGCAACCC 539
Query 531 TATCAAGTTCCAATCTATGACTTTAAGACTCATCAACGTAGATCTGATACTTTCCGCCAG 590
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 TATCAAGTTCCAATCTACGACTTTAAGACCCATCAACGTAGATCTGATACTTTCCGCCAG 599
Query 591 GTCAATGCTTCTGATGTAATAATATTGGAAGGGATTCTAGTTTTCCATGACTCACGAGTT 650
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTCAATGCTTCTGATGTTATAATATTGGAAGGGATTCTAGTTTTCCATGACTCACGAGTT 659
Query 651 CGGAATCTGATGAATATGAAGATCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGC 710
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGGAATCTGATGAATATGAAGGTCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGC 719
Query 711 AGAATTAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTGTGCTTGAACAGTAT 770
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGAATCAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTCTGTGCTTGAACAGTAT 779
Query 771 GCAAAGTTTGTGAAGCCGGCATTTGATGACTTCGTGCTCCCTTCAAAGAAATATGCTGAC 830
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 780 GCAAAGTTTGTGAAGCCGGCATTTGATGACTTTGTGCTCCCCTCGAAGAAATATGCTGAC 839
Query 831 GTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGATTACGCAACATATC 890
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 GTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTTGATTACACAACATATC 899
Query 891 CACACAAAACTTGGGCAGCATGATCTCTGCAAAATCTACCCAAATGTTTATGTTATCCAG 950
|||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 900 CACACAAAACTTGGGCAGCATGATCTGTGCAAAATCTACCCAAATGTTTACGTCATCCAA 959
Query 951 TCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAAAAGGACATATCAAAGCAT 1010
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 TCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAGAAGGACATATCAAAGCAT 1019
Query 1011 GACTTTGTGTTTTATTCAGATAGACTCATTCGTCTGGTCGTGGAGCATGGTCTTGGTCAT 1070
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1020 GATTTTGTGTTTTATTCAGATCGACTCATTCGTCTGGTTGTGGAGCATGGTCTTGGTCAT 1079
Query 1071 TTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGAGCTGTATATACCGGTGTTGAT 1130
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1080 TTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGCGCTGTATATACCGGTGTTGAT 1139
Query 1131 TTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGAAAATGCA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGAAAATGCA 1199
Query 1191 TTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCACCGTGATGGCGAT 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCACCGTGATGGCGAC 1259
Query 1251 AATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATATCTGAACGCCATGTCCTG 1310
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1260 AATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATCTCTGAACGCCATGTCCTG 1319
Query 1311 CTTCTAGATCCTGTCTTAGCCACAGGTAACTCGGCTAATCAAGCCATTGAACTACTCATA 1370
|||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |||
Sbjct 1320 CTTCTAGATCCTGTCTTAGCCACAGGTAACTCTGCAAATCAAGCCATTGAATTACTTATA 1379
Query 1371 CAGAAAGGTGTTCCTGAAGCTCACATTATATTCCTCAACCTTATATCGGCGCCGGAGGGA 1430
|||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1380 CAGAAAGGAGTTCCTGAATCTCACATTATATTCCTCAACCTTATCTCGGCACCGGAGGGA 1439
Query 1431 ATCCACTGTGTCTGCAAACGTTTTCCAGCATTGAAAATTGTGACGTCTGAAATAGACCAA 1490
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1440 ATCCACTGTGTCTGCAAACGTTTTCCAGCATTGAAGATAGTGACGTCTGAAATAGACCAG 1499
Query 1491 TGTCTGAACCAAGAATTCAGAGTTATACCGGGCTTAGGCGAGTTTGGCGATCGTTACTTC 1550
||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1500 TGTCTAAACCAAGAGTTCCGAGTTATACCGGGCTTAGGCGAGTTTGGTGATCGTTACTTC 1559
Query 1551 GGCACCGACGAGGAAGACCAGTAGCCACCACTCAACACTGTGACTGGTTTC-A--AAG-G 1606
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || |
Sbjct 1560 GGCACCGACGAGGAAGACCAGTAGCCACCACTCAACACTGTGACCGGTTTCGAGCAAATG 1619
Query 1607 AAA-AGCCTAAATT-TATGACTAGAGCGACAGTAGAGGCACTTGCATGTCTTTGTAGTTT 1664
||| |||||||||| |||||||||||||||| ||||||||| || |||||||||||
Sbjct 1620 AAACAGCCTAAATTCTATGACTAGAGCGACACTAGAGGCACGTGTATGTCTTTGTA---- 1675
Query 1665 GTGCTAAAGAATCTTTATCTTATTG-TTTATGAAGCTCCTCTTGCTTACTTGAATTATTT 1723
|||||||| | || |||||| | |||||||||||| ||||||||||| |||||| ||
Sbjct 1676 ---CTAAAGAACCATTCTCTTAT-GATTTATGAAGCTCTTCTTGCTTACTCGAATTACTT 1731
Query 1724 TTGAAAAACT-ACGTTAATTTTCTCATTaaaaa-aaTGA--TCGGGACAATGCTAGTTTT 1779
||||||| || | ||||||||||| ||||| | || || | |||| | ||||||||||
Sbjct 1732 TTGAAAA-CTTAAGTTAATTTTCTGATTAAGGATAA-GAAATAGGGA-A-TGCTAGTTTT 1787
Query 1780 CTAAACCGGTGGA-AAAAGACATAACCAATCCTTTTATACATGATTTTG-ACAATCGTA 1836
||||||||| ||| ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1788 CTAAACCGGCGGAGAAAAGACATAACCAATCCTTTTATACATGATTTTGGA-AATCGTA 1845
> Ahg936446 jgi|Araly1|936446|scaffold_500637.1
Length=1493
Score = 1530 bits (828), Expect = 0.0
Identities = 1265/1474 (86%), Gaps = 38/1474 (3%)
Strand=Plus/Plus
Query 108 AATCCAATGCCGGAAGATTCTTCTTC-TTTAGACTACG-CGATGGAGAAGGCATCAGGGC 165
||| ||||||||||||||||| | | || ||||| | | |||||||||||||| ||||
Sbjct 16 AATTCAATGCCGGAAGATTCTAATGCGATT-GACTATGTC-ATGGAGAAGGCATCGGGGC 73
Query 166 CTCACTTCTCCGGTCTTCG-CTTCGACGGCCTTCTCTCTTCTTCTCCACCCAATTCCTCC 224
||||||||||||||||||| ||| ||||| | | |||| |||||||| | || ||||||
Sbjct 74 CTCACTTCTCCGGTCTTCGCCTT-GACGGTC-T-TCTC-TCTTCTCCGTCGAAATCCTCC 129
Query 225 G--TCGTCT-C-T-TCA-CTCCG-ATCAGCTGTTTCTTCTTCTTCTCCGTCT-TCTTCCG 276
| || ||| | | ||| |||| | || | ||| |||| || |||| || || ||
Sbjct 130 GTCTCTTCTCCTTCTCATTTCCGTTTAAG-TAATTCATCTT-TT-TCCG-CTATC-GACG 184
Query 277 ATCCCGAAGCGCCTAAGCAGCCCTTCATTATCGGGGTTTCTGGTGGTACGGCTTCTGGTA 336
|||||| || ||| | ||||||||| ||||||| ||| |||||||||| ||||||||||
Sbjct 185 ATCCCGCCGCTCCTCATCAGCCCTTCGTTATCGGAGTTACTGGTGGTACTGCTTCTGGTA 244
Query 337 AGACCACGGTCTGTGACATGATAATCCAGCAACTTCATGACCATCGTGTCGTTTTAGTTA 396
|||||||||| ||||||||||| || |||||||||||||| ||||| | ||| ||||||
Sbjct 245 AGACCACGGTGTGTGACATGATTATTCAGCAACTTCATGATCATCGCATTGTTCTAGTTA 304
Query 397 ATCAGGATTCCTTTTATCGTGGTTTGACATCTGAGGAGTTGCAGCGTGTGCAAGAGTATA 456
| |||||||||||||| |||||| |||||||||| || ||| ||| ||| ||||| ||||
Sbjct 305 ACCAGGATTCCTTTTACCGTGGTCTGACATCTGAAGAATTGGAGCATGTACAAGAATATA 364
Query 457 ACTTTGATCATCCTGATGCGTTTGACACTGAGCAGCTTTTGCATTGTGCTGAGACTCTCA 516
| ||||||||||||||||| |||||||||||||||||||||||||| | ||| || ||||
Sbjct 365 ATTTTGATCATCCTGATGCCTTTGACACTGAGCAGCTTTTGCATTGCGTTGACACACTCA 424
Query 517 AGAGCGGGCAACCCTATCAAGTTCCAATCTATGACTTTAAGACTCATCAACGTAGATCT- 575
|||| |||||||| |||||| ||||||| || ||||| || || |||||||||| || |
Sbjct 425 AGAGTGGGCAACCTTATCAAATTCCAATTTACGACTTCAAAACCCATCAACGTAAAT-TA 483
Query 576 GATACTTTCCGCCAGGTCAATGCTTCTGATGTAATAATATTGGAAGGGATTCTAGTTTTC 635
||| |||| || ||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 484 GATGCTTTTCGTCAGGTCAATGCTTGTGATGTCATAATTTTGGAAGGGATTCTAGTTTTC 543
Query 636 CATGACTCACGAGTTC-GGAATCTGATGAATATGAAGATCTTTGTTGATACAGATGCTGA 694
|||||||| ||||||| ||| | ||||||||||||||||||| ||||| |||||||||||
Sbjct 544 CATGACTCGCGAGTTCGGGACT-TGATGAATATGAAGATCTTCGTTGACACAGATGCTGA 602
Query 695 TGTAAGGCTTGCTCGCAGAATTAGGCGTGACACAGTTGAGAGGGGTAGGGATGTCAATTC 754
||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||
Sbjct 603 TGTGAGGCTTGCTCGCAGAATCAGGCGTGACACGGTTGAGAGGGGCAGGGATGTTGATTC 662
Query 755 TGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCGGCATTTGATGACTTCGTGCTCCCTTC 814
||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||
Sbjct 663 TGTGCTTGAACAGTATGCAAAGTTTGTGAAGCCCGCGTTTGATGATTTTGTGCTCCCCTC 722
Query 815 AAAGAAATATGCTGACGTGATCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGATTT 874
|||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 723 TAAGAAATATGCTGATGTGATCATTCCCCGAGGAGGTGACAATCATGTTGCAGTTGATTT 782
Query 875 GATTACGCAACATATCCACACAAAACTTGGGCAGCATGATCTCTGCAAAATCTACCCAAA 934
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 783 GATTGTGCAACATATCCACACAAAACTTGGGCAACATGATCTCTGCAAAATCTACCCAAA 842
Query 935 TGTTTATGTTATCCAGTCAACATTTCAGATAAGAGGCATGCATACACTTATTCGGGAAAA 994
|||| |||||| | |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 843 CGTTTTTGTTATTGAATCAACATTTCAGATTAGAGGCATGCATACACTTATTCGAGAGAA 902
Query 995 GGACATATCAAAGCATGACTTTGTGTTTTATTCAGATAGACTCATTCGTCTGGTCGTGGA 1054
|||||||||||| ||||||||||||||||| |||||| | ||||||||| |||| || ||
Sbjct 903 GGACATATCAAAACATGACTTTGTGTTTTACTCAGATCGCCTCATTCGTTTGGTTGTAGA 962
Query 1055 GCATGGTCTTGGTCATTTGCCATTCACTGAGAAACAAGTAGTTACTCCAACAGGAGCTGT 1114
||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 963 GCACGGTCTTGGCCATTTGCCTTTCACTGAGAAACAAGTAGTTACCCCAACAGGATCTGT 1022
Query 1115 ATATACCGGTGTTGATTTCTGCAAGAAACTTTGTGGGGTCTCAATTATTAGAAGTGGTGA 1174
|||| |||||||||||||||||||||||||||||| |||||| | ||| ||||||||||
Sbjct 1023 GTATAGCGGTGTTGATTTCTGCAAGAAACTTTGTGGCGTCTCAGTCATTCGAAGTGGTGA 1082
Query 1175 AAGCATGGAAAATGCATTACGCGCTTGCTGCAAAGGAATTAAA-ATAGGGAAGATTCTCA 1233
|||||||||||| ||||||||||| || |||||||| || ||| ||||||||||||||||
Sbjct 1083 AAGCATGGAAAACGCATTACGCGCGTGTTGCAAAGGGAT-AAAGATAGGGAAGATTCTCA 1141
Query 1234 TCCACCGTGATGGCGATAATGGAAAACAGCTTATTTATGAGAAGCTTCCTCACGACATAT 1293
|||| ||||||||||| ||||||| |||||||| || ||||||||||| | | ||||
Sbjct 1142 TCCATCGTGATGGCGACAATGGAATGCAGCTTATATACGAGAAGCTTCCA-A-GTGATAT 1199
Query 1294 CT--GAACGCCATGTCCTGCT-TCTAGATCCTGTCTTAGCCACAGGTAACTCGGCTAATC 1350
|| || |||||||||||||| | |||||||||| |||| |||||||||||| || || |
Sbjct 1200 CTCCGAGCGCCATGTCCTGCTAT-TAGATCCTGTTTTAGGCACAGGTAACTCTGCAAACC 1258
Query 1351 AAGCCATTGAACTACTCATACAGAAAGGTGTTCCTGAAGCTCACATTATATTCCTCAACC 1410
| || || |||||||||||||||||||| || |||||||| |||||||||||| | || |
Sbjct 1259 AGGCGATAGAACTACTCATACAGAAAGGAGTACCTGAAGCCCACATTATATTCTTAAATC 1318
Query 1411 TTATATCGGCGCCGGAGGGAATCCACTGTGTCTGCAAACGTTTTCCAGCA-TTGAAAATT 1469
| || || ||||| || |||||||| || ||||||||||| |||||| | ||||| |||
Sbjct 1319 TCATCTCAGCGCCCGAAGGAATCCATTGCGTCTGCAAACGGTTTCCAA-AGTTGAAGATT 1377
Query 1470 GTGACGTCTGAAATAGACCAATGTCTGAACCAAGAATT-CAGAGTTATACCGGGCTTAGG 1528
||||| || ||||| || || ||||||||| |||| || | |||||||||| ||||| ||
Sbjct 1378 GTGACTTCAGAAATCGATCAGTGTCTGAACGAAGAGTTTC-GAGTTATACCAGGCTTGGG 1436
Query 1529 CGAGTTTGGCGATCGTTACTTCGGCACCGACGAG 1562
|||||||| ||||| ||||| || || ||||||
Sbjct 1437 TGAGTTTGGTGATCGCTACTTTGGTACTGACGAG 1470
> Ahg896655 jgi|Araly1|896655|Al_scaffold_0005_621
Length=1395
Score = 340 bits (184), Expect = 2e-92
Identities = 504/655 (77%), Gaps = 36/655 (5%)
Strand=Plus/Plus
Query 602 TGATGTAATAATATTGGAAGGG-ATTCTAGTT-TTCCATGACT-CACGAGTTCG-GAATC 657
||||||||| || || | |||| || |||||| || ||||| | | |||||||| | |||
Sbjct 387 TGATGTAATCATCTTAG-AGGGAATCCTAGTTCTT-CATGA-TCCTCGAGTTCGTG-ATC 442
Query 658 TGATGAATATGAAGATCTTTGTTGATACAGATGCTGATGTAAGGCTTGCTCGCAGAATT- 716
| ||||| ||||||||||||||||||||||||||||||||| ||||| | | |||||
Sbjct 443 TCATGAACATGAAGATCTTTGTTGATACAGATGCTGATGTACGGCTTTCGAGAAGAATAC 502
Query 717 AGGCGTGACACAGTTGAGAGGGGTAGGGATGTC-AATTCTGTGCTTGAACAGTATGCAAA 775
| ||||| || || ||||| || || | || || |||||||||||||||| ||||
Sbjct 503 AA-CGTGATACCGTCGAGAGAGGAAGAAACATCCAAAA-TGTGCTTGAACAGTATACAAA 560
Query 776 GTTTGTGAAGCCG-GCATTTGATGACTTCGTGCTCCCTTCAAAGAAATATGCTGACGTGA 834
|||||||||||| | |||||||| ||| | | || || | ||| || |||||| | |
Sbjct 561 GTTTGTGAAGCCTAGT-TTTGATGAATTCATCCAGCCATCGATGAAGTACGCTGACATAA 619
Query 835 TCATTCCTCGAGGAGGTGATAATCACGTTGCAGTCGAT-TTGATTACGCAACATATCCAC 893
|||||||||||||||| || ||| | |||||| | || || ||| ||||||||||
Sbjct 620 TCATTCCTCGAGGAGGAGACAATGATGTTGCAATTGACCTT-ATTGTTCAACATATCCGT 678
Query 894 ACAAAACTTGGGC-AGCATGATCTCTGCAAAATCTACCCAAATGT-TT-ATGTTATCCAG 950
||||| || | || | || ||||||| || || ||| |||| | || || ||||
Sbjct 679 ACAAAGCT-GTGCCAACACAATCTCTGTAAGATATACTCAAACATCTTCATCATATCT-- 735
Query 951 TCAACATTTCAGAT-AAGAGGCATGCATACACTTATTCGGGAAAAGGACATATCAAAGCA 1009
|||||||| ||||| || ||| |||||||| ||||| || || | ||| | |||||||
Sbjct 736 TCAACATTCCAGATCAA-AGGAATGCATACTCTTATCCGCGACATCAACACAACAAAGCA 794
Query 1010 TGACTTT-GTGTTTTATTCAGATAGACTCATTCGTCTGGTCGTGGAGCATGGTCTTGGTC 1068
||| ||| || ||||| | || || | ||||| ||||||||||| ||||| |||||||
Sbjct 795 TGA-TTTCGTCTTTTACGCTGACCGATTGATTCGACTGGTCGTGGAACATGGACTTGGTC 853
Query 1069 AT-TTGCCATTCACTGAGAAACA-AGT-AGTTACTCCAACAGGAG-CTGTATATACCGGT 1124
|| || || ||||| |||||||| | | | ||||||||||| | | || || || ||
Sbjct 854 ATCTT-CCTTTCACAGAGAAACAGA-TCACC-ACTCCAACAGG-GTCAGTGTACACTGGA 909
Query 1125 GTTGATTTCTGCAAGAAACTT-TGTGGGGTCTCAATTATTAGAAGTGGTGAAAGCATGGA 1183
|| || |||||||||| | || ||||| |||||| | || |||||||| |||||||||||
Sbjct 910 GTCGACTTCTGCAAGAGA-TTGTGTGGCGTCTCAGTGATCAGAAGTGGAGAAAGCATGGA 968
Query 1184 AAATGCATTACGCGCTTGCTGCAAAGGAATTAAAATAGGGAAGATTCTCATCCAC 1238
|||||| || | ||||||||||| |||||||| || || || |||||||| |||
Sbjct 969 GAATGCACTAAGAGCTTGCTGCAATGGAATTAAGATTGGTAAAATTCTCATTCAC 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5