BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40930.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg355882 jgi|Araly1|355882|fgenesh1_pg.C_scaffold_7003055 556 6e-158
> Ahg355882 jgi|Araly1|355882|fgenesh1_pg.C_scaffold_7003055
Length=606
Score = 556 bits (301), Expect = 6e-158
Identities = 379/415 (91%), Gaps = 12/415 (3%)
Strand=Plus/Plus
Query 67 ATGGATATGCAGAATGAAAACGAGAGATTGATGGTCTTCGAACATGCTCG-CAAAGTAGC 125
||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1 ATGGATATGCAGAATAAAAACGAGAGATTGATGGTCTTCGAACATGCTCGTC-AAGTATC 59
Query 126 AGAAGCAACCTACGTCAAAAACCCTTTAGATGCCGAGAATTTGACGAGATGGGCAGGAGC 185
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 60 AGAAGCAACCTACGTCAAAAACCCCTTAGATGCCGATAATTTGACGAGATGGGCAGGAGC 119
Query 186 TTTACTT-GAACTATCACAGTTTCAG--A----CAGAGCCAAAGCAGATGATTCTAGAGG 238
|||| || |||||||||||||||||| | ||||| ||||||||||||||| |||||
Sbjct 120 TTTA-TTGGAACTATCACAGTTTCAGAAACCCTCAGAGTCAAAGCAGATGATTCAAGAGG 178
Query 239 CTATTTTGAAGCTGGGAGAGGCCTTGGTCATCGATCCAAAGAAGCATGATGCTCTTTGGT 298
| |||| || |||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 179 CCATTTCGAGGCTGGGAGAGGCGTTGTTAATCGATCCAAAGAAGCATGATGCTCTTTGGT 238
Query 299 TAATTGGGAATGCTCATCTTTCATTTGGGTTTTTGAGTTCTGATCAGACAGAAGCTAGCG 358
||||||||||||||||| |||||| || |||||||| | ||||||||||||||||||| |
Sbjct 239 TAATTGGGAATGCTCATATTTCATATGCGTTTTTGAATCCTGATCAGACAGAAGCTAGAG 298
Query 359 ATAACTTTGAGAAAGCTTCTCAGTTCTTTCAACTTGCTGTGGAGGAGCAACCAGAGAGCG 418
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||
Sbjct 299 ATAACTTTGAGAAAGCTTCTCAGTTCTTTCAACTAGCTGTGGAGGAGCAACCGGATAACG 358
Query 419 AACTCTATCGGAAATCATTG-ACATTGGCTTCCAAGGCTCCAGAACTACATACAG 472
||||||||||||||||| || | |||||||||||||| |||||||||||||||||
Sbjct 359 AACTCTATCGGAAATCAGTGGA-ATTGGCTTCCAAGGGTCCAGAACTACATACAG 412
Score = 252 bits (136), Expect = 3e-66
Identities = 152/160 (95%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 471 AGGCGGCACCGCTGGACCATCATCTAACAGTGCGAAGACGATGAAGCAGAAAAAGACCAG 530
|||||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||
Sbjct 447 AGGCGGCACCGCTGGACCATCATCTACCAGTGCAAAGACGATGAAGCAAAAAAAGAACAG 506
Query 531 TGAGTTCAAGTATGATGTGTTCGGATGGGTCATCTTAGCCAGTTACGTTGTTGCGTGGAT 590
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 507 TGAGTTCAAGTATGATGTGTTCGGATGGGTCATCTTAGCCGGTTACGTTGTTGCGTGGAT 566
Query 591 CAGTTTTGCCAATTCTCAGACGCCGGTGTCAAGGCAGTAA 630
|||||||||||| ||||||| ||||||||||||||| |||
Sbjct 567 CAGTTTTGCCAAATCTCAGATGCCGGTGTCAAGGCAATAA 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5