BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40940.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493882 jgi|Araly1|493882|fgenesh2_kg.7__3315__AT5G40940.1 1759 0.0
> Ahg493882 jgi|Araly1|493882|fgenesh2_kg.7__3315__AT5G40940.1
Length=1264
Score = 1759 bits (952), Expect = 0.0
Identities = 1175/1280 (92%), Gaps = 25/1280 (2%)
Strand=Plus/Plus
Query 1 ATGAATAAAAAGCCCAGTAAATATTTTCCCTCTCTT-AATAGGACGGACTATAAAAACTG 59
|||||||||||||||||||||||||||||| ||||| |||||||||||| |||| |||
Sbjct 1 ATGAATAAAAAGCCCAGTAAATATTTTCCCGCTCTTAAATAGGACGGAC--TAAACGCTG 58
Query 60 TAACTTCCTCTGCAACGGCTTTTCTC-TGAAACCA-AACGaaaaaaaaaGCTCGAAGAAC 117
|||||||| ||||||||||||||||| |||| || || ||||||||||||||||||||
Sbjct 59 TAACTTCCCCTGCAACGGCTTTTCTCAAGAAAACAGAA--AAAAAAAAAGCTCGAAGAAC 116
Query 118 GCATCAATGGCGTCGAAGCTTCTAACGACCTTCTTCCTCATATTTTTCGTTCTCGATATC 177
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 117 GCATCAATGGCGTCGAAGCTTCTAACGACCTTCTTCTTCCTATTTTTCGTTCTCGAT--C 174
Query 178 GATCTCGTCGCAACTTCTATGACATCTGTTTCATCCGCCGTGGAAGTTCTTTCCGATTCC 237
|| |||||| ||||| |||||||||||||||||||||| ||||| || ||||||||
Sbjct 175 --TC--GTCGCACCTTCTCTGACATCTGTTTCATCCGCCGTAGAAGTGCTCTCCGATTCT 230
Query 238 GGCTACTTATCCATGGGACTCACACTAAAGCTCGCGAATCAAGATCTAAACCTCGAAGAT 297
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 231 GGCTACTTATCCATGGGACTCACTCTACAGCTCGCGAATCAAGATCTAAACCTCGAAGAT 290
Query 298 TGGCAAGAACTCACCCTCTTCGCACCTTCTGATCAATCTTTCTCTA-AGTTTGGTCAACC 356
||||||||||||||| |||||||||||||||||||| |||||| | | |||||||||||
Sbjct 291 TGGCAAGAACTCACCATCTTCGCACCTTCTGATCAAGATTTCTCCAGA-TTTGGTCAACC 349
Query 357 TTCGCTTCTCGATATGAAGTACCAGCTCTCTCCGACGAGACT-CCCAGGAGAAACCTTAA 415
||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 350 TTCGCTTCTCGATATCAAATACCAGCTCTCTCCGACGAGACTTCCC-GGAGAAACCCTAA 408
Query 416 GAAACCTCCCAAATGGCGCCAAAATCCCTACTCTCAGATCTAATTACTCTCTAACCGTCA 475
|||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 409 GAAACCTCCCAAATGGCGTCAAAATCCCTACTCTCAGATCTGATTCCTCTCTAACCGTCA 468
Query 476 CGAATTCTTCACGATTCGGAGGTAAAACTTCGATCAACAACGTCGTAGTCCAAGATTCTC 535
| |||||||||||||||||| ||| || ||||||||||||||||||||| || |||||||
Sbjct 469 CAAATTCTTCACGATTCGGACGTATAATTTCGATCAACAACGTCGTAGTTCATGATTCTC 528
Query 536 CTGTTTTTGACGACGGATACGTCGTGATTTACGGATCCGACGAGTTTTTCACATCACCGA 595
|||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct 529 CTGTTTTTGACGACGGCTACATCGTGATTTACGGATCCGGCGAGTTTTTCACATCCCCGA 588
Query 596 CGAAAATCTCCGACGATTCATCATCTTCTTCTTCAATCCCAAGCACTACTTCATCTACTG 655
|||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 589 CGAAGATCTCCGACGATTCATCATCGTCTTCTTCAATCCCAAACACTACCTCATCTACTG 648
Query 656 GTTCAATCCCTATCCCTAGCTCAGCGACTCAAACACCTCCAAGTCCTAATAT-CGCTTCG 714
||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||
Sbjct 649 GTTCAATCCCTATCCCTAGTTCAGCGACTCACACACCTCCAAGTCCTAA-ATTCGCTTCC 707
Query 715 GATTCCACTCGAAATCTTCCCAATAGATCTAAACCAGTGAATCGCTTCAACATCTTTGAA 774
|||||||||||||||||||| ||| |||| |||||||||||| ||||||||| |||||||
Sbjct 708 GATTCCACTCGAAATCTTCCAAATGGATCAAAACCAGTGAATTGCTTCAACAACTTTGAA 767
Query 775 TCGGCTTCAAGATTGTTAATGTCGAGAGGTTTCGTGATTATAGCTACGTTTCTCGCTCTG 834
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 768 TCGGCATCAAGATTGTTAATGTCAAGAGGTTTCGTGATCATAGCTACGTTTCTCGCTCTG 827
Query 835 CAATTAGAAGATAATACTTCAGGAAACGACACGAAGATCACAGTCTTTGCTCCGATCGAC 894
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 828 CAATTAGAAGATA---CTTCAGGAAACGACACGAAGATCACAGTCTTTGCTCCAATCGAC 884
Query 895 GAAGCAATTCCAAATCCAACTACTAAATTCTCCGATTACGTTACTATTTTCAGAGGACAT 954
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 885 GAAGCAATTCCAAATCCAAGTACCAAATTCTCCGATTACGTTACTATTTTCAGAGGACAT 944
Query 955 GTTGTCAGTCAACTTCTCTTATGGAAAGATCTTCAGAAATTTGCTAAGGAAGGATCGATT 1014
|| ||| || |||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 945 GTAATCAATCGACTTCTTTTATGGAAAGATCTTCAGAAATTGGCTAAGGAAGGAGCGATT 1004
Query 1015 CTGCAGACTGTTCTTAAAGGGTATGAGATTGAGATTTCTTTGTCCGGTGATATACTTCTT 1074
||||| | |||||||||||||||||| |||||| |||||| ||| |||||||||||||||
Sbjct 1005 CTGCAAAGTGTTCTTAAAGGGTATGAAATTGAGGTTTCTTGGTCTGGTGATATACTTCTT 1064
Query 1075 CTCAATGGAGTTCCACTCATATATCCAGATTTGTATGTCAACGATTGGATTGCTGTTCAT 1134
|| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1065 CTTAATGGATTTCCACTCATATATCCAGATTTGTTTGTCAACGATTGGATTGCTGTTCAT 1124
Query 1135 GGCTTTAATCAGATGATTGTAACAAAAGAGAAACAGGTGGATGTGGGAGATTCTATCACA 1194
|||||||||||||||||||| | |||||||||||||| || ||||||| |||||||||
Sbjct 1125 GGCTTTAATCAGATGATTGTTCCGAAAGAGAAACAGGTTAATTTGGGAGAGTCTATCACA 1184
Query 1195 GTGCTAAACAATGGAGAACAAGAAGAAGAAG--G-TGTTCATGGAGAGTACTCTTCTGAG 1251
|||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||
Sbjct 1185 GTGCTAAACAATGGAGAAGAAGAAGAAGAAGAAGGTGTTCATGAAGAGTACTCTTCTGAG 1244
Query 1252 TTAGGTGACTATGGTCTTCA 1271
|| |||||||||||||||||
Sbjct 1245 TTGGGTGACTATGGTCTTCA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5