BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40942.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947638 jgi|Araly1|947638|scaffold_703867.1 1616 0.0
> Ahg947638 jgi|Araly1|947638|scaffold_703867.1
Length=1042
Score = 1616 bits (875), Expect = 0.0
Identities = 960/1002 (96%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 1 ATGCCTTCGATGCCAGAGGAACCAATCCTAACACCAACACCAGATCGATTCTGTATGTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGCCTTCGATGCCAGAGGAACCAATCCTAACACCAACACCAGATCGATTCTGTATGTTC 80
Query 61 CCAATCCAATACCCACAGATTTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACA 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 81 CCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACC 140
Query 121 GCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTAACCAACGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 GCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTATCCAACGAC 200
Query 181 GAACGTCACTTCATTAAACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAATCGTTCTC 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAATCGTTCTG 260
Query 241 GAGAATCTCTCAACTAGATTCATGTCCGATGTTCAGATCTCAGAAGCTCGTGCCTTCTAC 300
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 261 GAGAATCTCTCAACCCGATTCATGTCCGATGTTCAGGTCTCAGAAGCTCGTGCCTTCTAC 320
Query 301 GGATTCCAAATCGCGATTGAGAATATTCACTCCGAGATGTATAGTCTCCTTCTCGACACG 360
|| ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 321 GGTTTCCAAATCGCAATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGACACT 380
Query 361 TATATCAAAGACAACAAAGAGAGAGATCATCTTTTTCGTGCAATCGAAACCATTCC-T-T 418
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | |
Sbjct 381 TACATCAAAGACAACAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACAATTCCTTGT 440
Query 419 GTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAACGGATCTCAAAGCTTCGCTGAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAACGGATCTCAAAGCTTCGCTGAG 500
Query 479 AGAATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTTCTCCGGTAGCTTTTGTTCGATA 538
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 501 AGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATA 560
Query 539 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACTTTTTCAAACGAATTGATTTCG 598
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 561 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCG 620
Query 599 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATATATAGTCTTCTTAGAACTAAG 658
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 621 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAGTCTTCTTAGAACTAAG 680
Query 659 TTTGATGAAGATCGTTTGAAAGCGATTGTTTGTGATGCTGTTGAGATTGAGAGAGAGTTT 718
|||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 681 CTTGATGAAGAACGTTTGAAATCGATTGTTTGTGATGCGGTTGAGATCGAGAGAGAGTTT 740
Query 719 GTTTGTGACGCGCTTTCTTGTGCCTTGGTTGGGATGAATCGTGAGTTGATGAGTCAGTAC 778
||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 741 GTTTGCGACGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGATTTGATGAGTCAGTAC 800
Query 779 ATTGAGTTCGTTGCTGATAGGTTGTTGGCTGCGCTTGGGTGTGGTAAGGTGTATGGTGTG 838
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 801 ATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGTGTG 860
Query 839 ACTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAGGGTAAGACCAACTTTTTTGAG 898
| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 861 AGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTTGAG 920
Query 899 AAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATGTCTAGTGTTCATGGAAACGCTGCG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATGTCTAGTGTTCATGGAAACGCTGCG 980
Query 959 TTTAATGATGATCATGTCTTCAAGCTTGACGAGGATTTTTAG 1000
||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TTTAATGATGATCATGTCTTCAAGCTTGACGAGGATTTTTAG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5