BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40950.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493880 jgi|Araly1|493880|fgenesh2_kg.7__3313__AT5G40950.1 1094 0.0
> Ahg493880 jgi|Araly1|493880|fgenesh2_kg.7__3313__AT5G40950.1
Length=773
Score = 1094 bits (592), Expect = 0.0
Identities = 715/775 (92%), Gaps = 6/775 (1%)
Strand=Plus/Plus
Query 30 AAAACCCTAATTTCTCCATTTCGAAACTCCAACGAATTCTCTGGTGATTTTACCAATGGC 89
|||||||||||||||||||||| ||| || ||||||||||||| |||||||| |||||||
Sbjct 1 AAAACCCTAATTTCTCCATTTCCAAATTCAAACGAATTCTCTGCTGATTTTAGCAATGGC 60
Query 90 GATGGCAACATCGATGAGTTTGAATCTAATTGGGGCATTCAAAGGCTTGTCTCTTTCTTC 149
||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 61 GATGGCAACATCGATGACTTTGAATCTAGTTGGGGCATTCAAAGGCTTGTCTCTCTCTTC 120
Query 150 GACTTCGTCTTTTCTTAGAGGCGATTTGAGTTTTTCCCCCAAAACCTCTTTCACGGTGAC 209
|| ||||||||||| ||||||||||||| |||| ||| ||||| ||||||| || ||
Sbjct 121 AACCTCGTCTTTTCTCAGAGGCGATTTGAATTTTAGCCCGAAAACAACTTTCACCGTTAC 180
Query 210 TCTTCCTCTGGAAAATCTTCAAGCTCCGATTCCGTTGACAATTGAATCGGCCCATAAGAA 269
||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 181 TCTTCCTTTGGAAAATCTTCAAGCTCCGATTCCGTTGACGATTGAGTCGGCCCACAAGAA 240
Query 270 AGGAGCTGGTAGCACCAAGAACGGTCGTGATTCTCCTGGGCAACGACTCGGCGTCAAGAT 329
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGAGCTGGTAGTACTAAGAACGGTCGTGATTCTCCTGGGCAACGACTCGGCGTCAAGAT 300
Query 330 CTACGGTGACCAAGTTGCTAAACCTGGTGCTATCATTGTTCGTCAACGTGGCACTAAGTT 389
||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 301 TTACGGAGACCAAGTCGCTAAACCTGGCGCCATCATTGTTCGTCAACGTGGCACTAAGTT 360
Query 390 CCATGCTGGGAAAAATGTTGGGATTGGTAAAGATCATACCATCTTCTCTTTAATCGATGG 449
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCATGCTGGGAAAAATGTTGGGATTGGTAAAGATCATACCATCTTCTCTTTAATCGATGG 420
Query 450 ATTAGTCAAGTTCGAGAAGTTTGGTCCTGACAGGAAGAAGATAAGTGTGTATCCAAGAGA 509
|||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| ||
Sbjct 421 ATTAGTCAAGTTTGAGAAGTTTGGCCCTGACAGGAAGCAGATTAGTGTGTATCCAAGGGA 480
Query 510 AATTGTACCAGAGAATCCCAATAGCTACAGAGCAAGAAAGAGAGAAAACTTCAGATTGCA 569
| |||| |||||||||||||| ||||||||||||||||||||||| || || ||||||||
Sbjct 481 AGTTGTGCCAGAGAATCCCAACAGCTACAGAGCAAGAAAGAGAGAGAATTTTAGATTGCA 540
Query 570 AAGGGAGAAGAAGAAGGCGAGACGCGAGAATTACTCGTACACACTTCCTACACCAGAACT 629
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 541 AAGGGAGAAGAAGAAGGCGAGACGCGAGAATTACACTTACACACTTCCTACACCTGAACT 600
Query 630 TGTTCTTGCATCTGCCTCAGTCGATGATGCTGAAGCCAATCCGGAGTGCTAGAAGATTGA 689
||||||||||||||| ||| |||||||||||||| |||||||||||||||||| ||| ||
Sbjct 601 TGTTCTTGCATCTGCATCAATCGATGATGCTGAAACCAATCCGGAGTGCTAGATGATCGA 660
Query 690 ATGTGGAGTTT-CCTTGTCTCTTTT-TGTTTAGTCTTGTTTATGAAAAATGATCCTTTCA 747
||||| ||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct 661 ATGTGAAGTTTTCCTTGTCTCTTTTATGTTTAGTCTTGTTCATGAAAA-TGATCCTTTCA 719
Query 748 GAGTATTAAGAGTTGGTTGTAT-TGTCGAA-TCCAAGCCTCTCTTTTGTCAAATT 800
|||| |||||||||| |||||| |||| || ||||||||||||||||||||||||
Sbjct 720 GAGTTTTAAGAGTTG-TTGTATGTGTCTAAATCCAAGCCTCTCTTTTGTCAAATT 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5