BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40960.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947636 jgi|Araly1|947636|scaffold_703865.1 411 4e-114
> Ahg947636 jgi|Araly1|947636|scaffold_703865.1
Length=249
Score = 411 bits (222), Expect = 4e-114
Identities = 240/249 (96%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 232 tcttgttcttGTAAGAAGAGATGCATGATTGGGCTGCACCGTTGATAGCTTCGGCTTTGT 291
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTTGTTCTTGTAAGAAGATATGCATGATTGGGCTGCACCGTTGATAGCTTCGGCTTTGT 60
Query 292 TCGCGTTTCTGTCGCCAGGGTTGATACTGCAGTTTCCGGGGAAAGAATCTCCGGTGGGTT 351
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTGCGTTTCTGTCGCCAGGATTGATACTGCAGTTTCCGGGGAAAGAATCACCGGTGGGTT 120
Query 352 TCATGAACATGAAGACGACGGTAGCTTCTATTTTCGTTCACACTGTTCTCTATGGTCTCT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCATGAACATGAAGACGACGGTAGCTTCTATTTTCGTTCACACTGTTCTCTATGGTCTCT 180
Query 412 TTCTTATCCTCTTTCTCGTTGTTCTCAACGTCCATGTCTATGCATAGCTCATTTATTACA 471
||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 181 TTCTTATCCTCTTCCTCGTCGTTCTCAACATCCATGTCTATGTATAGCTCATTTATTACA 240
Query 472 CTCATGTAT 480
||| |||||
Sbjct 241 CTCGTGTAT 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5