BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G40970.1

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg493879 jgi|Araly1|493879|fgenesh2_kg.7__3312__AT5G40970.1         662    0.0  
  Ahg322830 jgi|Araly1|322830|fgenesh1_pm.C_scaffold_5000374           183    7e-46


> Ahg493879 jgi|Araly1|493879|fgenesh2_kg.7__3312__AT5G40970.1
Length=443

 Score =  662 bits (358),  Expect = 0.0
 Identities = 420/449 (94%), Gaps = 7/449 (2%)
 Strand=Plus/Plus

Query  20   TTTTACGTTTTCTACTTCACAGCAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTA  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTTTACGTTTTCTACTTCACAGCAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTA  60

Query  80   TTATTCGTTATCCTTTCTCCGGGACTTCTTTTCTCGTTGCCCGGACATCACCATACTCTC  139
            ||||||||  |||||||||| || || ||||||||||||||||||| |||||| ||||||
Sbjct  61   TTATTCGTGCTCCTTTCTCCAGGTCTCCTTTTCTCGTTGCCCGGACTTCACCACACTCTC  120

Query  140  CAATTCGGCGGCATGAAAACCAACGGCAAAGCCATCGCCGTTCACACACTCATCTTCTTC  199
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  121  CAATTCGGCGGCATGAAAACCAACGGCAAAGCTATCGCCGTTCACACACTCATTTTCTTC  180

Query  200  GCTGCTTACACCATCTTGATCCTCGCTGTCAATCTCCACATCACTACCGGCTAATTTAT-  258
            ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| 
Sbjct  181  GCTGCTTACACGATCTTGATCCTCGCTGTCAATCTCCACATCACAACCGGCTGATTTATA  240

Query  259  GGGCCGAAATAAAGGTAACCCTTTTGCTGAATCTGAGCTCTCTCCCTCTCAGGAATCTTC  318
            ||| ||||||||||||||||||||||||||||||  |||   |  || |||| |||||||
Sbjct  241  GGG-CGAAATAAAGGTAACCCTTTTGCTGAATCT--GCTGAGT-TCT-TCAGTAATCTTC  295

Query  319  TGAGATCTGGAACTCTGTTTTTAGGGATTTGTATACTTTACTCTGTTCTCTAGTTTGTGT  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  TGAGATCTGGAACTCTGTTTTTAGGGATTTGTATACTTTACTCTGTTCTCTAGTTTGTGT  355

Query  379  TGTGCATTGAGTTAATACTGAAAAATGTAATAATCATTAAGCTTGTATTGATGTCATTAA  438
            |||||||||||||  ||||||||| ||||||||| ||||||||||||||| ||| |||||
Sbjct  356  TGTGCATTGAGTTTTTACTGAAAA-TGTAATAATTATTAAGCTTGTATTGTTGTGATTAA  414

Query  439  GTTATAATGCAAAATTTGATGTTTGATTC  467
            |||||||||||||||||||||||||||||
Sbjct  415  GTTATAATGCAAAATTTGATGTTTGATTC  443


> Ahg322830 jgi|Araly1|322830|fgenesh1_pm.C_scaffold_5000374
Length=429

 Score =  183 bits (99),  Expect = 7e-46
 Identities = 177/214 (83%), Gaps = 8/214 (4%)
 Strand=Plus/Plus

Query  42   CAATGGCGGATTGGGCTCCAGTTCTCGTCGGAGTTGTATTATTCGTTATCCTTTCTCCGG  101
            ||||||||||||||||||||||||||||||| || ||  | ||||| || || || ||||
Sbjct  218  CAATGGCGGATTGGGCTCCAGTTCTCGTCGGTGTGGTCCTCTTCGTGATTCTCTCACCGG  277

Query  102  GACTTCTTTTCTCGTTGCCCGG-ACATCA-CCATACTCTCCAATTCGGCGG-CATGAAAA  158
            ||||||| ||||| || || || | | || ||  ||| |  | ||||| || | | ||||
Sbjct  278  GACTTCTCTTCTCATTACCTGGTA-A-CAACCGGACTGTAGATTTCGGTGGTC-TCAAAA  334

Query  159  CCAACGGCAAAGCCATCGCCGTTCACACACTCATCTTCTTCGCTGCTTACACCATCTTGA  218
            ||||||||||||||||||| |||||||| |||||||||||||||  ||||||||| ||||
Sbjct  335  CCAACGGCAAAGCCATCGCTGTTCACACTCTCATCTTCTTCGCTATTTACACCATTTTGA  394

Query  219  TCCTCGCTGTCAATCTCCACATC-ACTACCGGCT  251
            |||||||| | |||||||||||| || || ||||
Sbjct  395  TCCTCGCTCTTAATCTCCACATCTAC-ACTGGCT  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16902925927


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5