BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G40980.1
Length=373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947634 jgi|Araly1|947634|scaffold_703863.1 425 9e-119
> Ahg947634 jgi|Araly1|947634|scaffold_703863.1
Length=250
Score = 425 bits (230), Expect = 9e-119
Identities = 240/245 (98%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 118 ACAGATTTTGTTGAGATATGAGTGCAGACTGGGGACCTGTGATTGTAGCAGTGGCTCTGT 177
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 4 ACAGATTTTGTTGAGATATGAGTGCAGATTGGGGACCTGTGATTGTAGCAGTAGCTCTGT 63
Query 178 TCATCCTACTCTCACCAGGATTGCTATTTCAGCTACCGGCAAGGACAAGAGTGATGGAAT 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 TCATCCTACTCTCACCAGGATTGCTATTTCAGCTACCGGCAAGGACAAGAGTGATGGAGT 123
Query 238 TCGGGAACATGAGCACAAGCGGGATTTCGATTTTGGTCCACGCCATTATTTACTTCTGTA 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TTGGGAACATGAGCACAAGCGGGATTTCGATTTTGGTCCACGCCATTATTTACTTCTGTA 183
Query 298 TACTCACTATCTTGATCATTGCCATACAAATTCACATCCATTTCTGATCATGTAGTGTAA 357
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 184 TACTCACTATCTTGATCATTGCCATACAAATTCACATCCATTTCTGATCTTGTAGTGTAA 243
Query 358 CAAAG 362
|||||
Sbjct 244 CAAAG 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13316300561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5